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2011 Fiscal Year Final Research Report

Development of genetic analysis method for risk diagnosis for multifactorial disease and drug response

Research Project

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Project/Area Number 22710191
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeSingle-year Grants
Research Field Medical genome science
Research InstitutionResearch Institute, International Medical Center of Japan

Principal Investigator

NISHIDA Nao  独立行政法人国立国際医療研究センター, 肝炎・免疫研究センター, 上級研究員 (50456109)

Project Period (FY) 2010 – 2011
KeywordsSNP / タイピング / 多因子疾患 / 個別化医療
Research Abstract

High-throughput and highly accurate SNP typing platforms are required to perform risk diagnosis for multifactorial disease and drug response. Here, we improve the DigiTag2 assay to shorten the running time and save the running cost by applying new type of enzyme. The DigiTag2 assay enables analysis of a set of 96 SNPs using Kapa 2GFast HotStart DNA polymerase with a new protocol that has a total running time of about 7 hours, which is 6 hours shorter than the previous protocol.

  • Research Products

    (28 results)

All 2012 2011 2010

All Journal Article (18 results) (of which Peer Reviewed: 18 results) Presentation (10 results)

  • [Journal Article] Meta-analysis identifies nine new loci associated with rheumatoid arthritis in the Japanese population2012

    • Author(s)
      Okada Y, Nishida N, et al., 他49名
    • Journal Title

      Nature Genetics

      Volume: 44(5) Pages: 511-6

    • DOI

      doi:10.1038/ng.2231.

    • Peer Reviewed
  • [Journal Article] Highly Parallel and Short-Acting Amplification with Locus-Specific Primers to Detect Single Nucleotide Polymorphisms by the DigiTag2 Assay2012

    • Author(s)
      Nishida N, Mawatari Y, et al., 他2名
    • Journal Title

      PLoS One

      Volume: 7(1) Pages: e29967

    • Peer Reviewed
  • [Journal Article] Genetic relationships between Japanese native and commercial breeds using 70 chicken autosomal SNP genotypes by the DigiTag2 assay2012

    • Author(s)
      Shimogiri T, Nishida N, et al., 他8名
    • Journal Title

      Animal Genetics

      Volume: 43(1) Pages: 98-103

    • DOI

      doi:10.1111/j.1365-2052.2011.02206.x.

    • Peer Reviewed
  • [Journal Article] C/EBPβand RUNX2 cooperate to degrade cartilage with MMP-13 as the target and HIF-2αas the inducer in chondrocytes2012

    • Author(s)
      Hirata M, Nishida N, et al., 他14名
    • Journal Title

      Human Molecular Genetics

      Volume: 21(5) Pages: 1111-23

    • Peer Reviewed
  • [Journal Article] A genome-wide CNV association study on panic disorder in a Japanese population2011

    • Author(s)
      Kawamura Y, Nishida N, et al., 他19名
    • Journal Title

      Journal of Human Genetics

      Volume: 56(12) Pages: 852-6

    • DOI

      doi:10.1038/jhg.2011.117.

    • Peer Reviewed
  • [Journal Article] No Evidence for Strong Recent Positive Selection Favoring the 7 Repeat Allele of VNTR in the DRD4 Gene2011

    • Author(s)
      Naka I, Nishida N, et al., 他1名
    • Journal Title

      PLoS One

      Volume: 6(8) Pages: e24410

    • Peer Reviewed
  • [Journal Article] Relationship between polymorphisms of the inosine triphosphatase gene and anaemia or outcome after treatment with pegylated interferon and ribavirin2011

    • Author(s)
      Kurosaki M, Nishida N, et al., 他21名
    • Journal Title

      Antiviral Therapy

      Volume: 16(5) Pages: 685-94

    • Peer Reviewed
  • [Journal Article] Genome-wide association study identified ITPA/DDRGK1 variants reflecting thrombocytopenia in pegylated interferon and ribavirin therapy for chronic hepatitis C2011

    • Author(s)
      Tanaka Y, Nishida N, et al., 他20名
    • Journal Title

      Human Molecular Genetics

      Volume: 20(17) Pages: 3507-16

    • Peer Reviewed
  • [Journal Article] Identification of novel schizophrenia Loci by homozygosity mapping using DNA microarray analysis2011

    • Author(s)
      Kurotaki N, Nishida N, et al., 他8名
    • Journal Title

      PLoS One

      Volume: 6(5) Pages: e20589

    • Peer Reviewed
  • [Journal Article] Common variation in GPC5 is associated with acquired nephrotic syndrome2011

    • Author(s)
      Okamoto K, Nishida N, et al., 他12名
    • Journal Title

      Nature Genetics

      Volume: 43(5) Pages: 459-63

    • Peer Reviewed
  • [Journal Article] Comparative analysis of copy number variation detection methods and database construction2011

    • Author(s)
      Koike A, Nishida N, et al., 他2名
    • Journal Title

      BMC Geneteics

      Volume: 12 Pages: 29

    • Peer Reviewed
  • [Journal Article] Association of IL28B variants with response to pegylated-interferon alpha plus ribavirin combination therapy reveals intersubgenotypic differences between genotypes 2a and 2b2011

    • Author(s)
      Sakamoto N, Nishida N, et al., 他18名
    • Journal Title

      Journal of Medical Virology

      Volume: 83(5) Pages: 871-8

    • DOI

      doi:10.1002/jmv.22038.

    • Peer Reviewed
  • [Journal Article] Pre-treatment prediction of response to pegylated-interferon plus ribavirin for chronic hepatitis C using genetic polymorphism in IL28B and viral factors2011

    • Author(s)
      Kurosaki M, Nishida N, et al., 他19名
    • Journal Title

      Journal of Hepatology

      Volume: 54(3) Pages: 439-48

    • Peer Reviewed
  • [Journal Article] ITPA gene variant protects against anemia induced by pegylated interferon-αand ribavirin therapy for Japanese patients with chronic hepatitis C2010

    • Author(s)
      Sakamoto N, Nishida N, et al., 他13名
    • Journal Title

      Hepatology Research

      Volume: 40(11) Pages: 1063-1071

    • DOI

      doi:10.1111/j.1872-034X.2010.00741.x.

    • Peer Reviewed
  • [Journal Article] Meta-analysis of genome-wide association scans for genetic susceptibility to endometriosis in Japanese population2010

    • Author(s)
      Adachi S, Nishida N, et al., 他15名
    • Journal Title

      Journal of Human Genetics

      Volume: 55(12) Pages: 816-21

    • Peer Reviewed
  • [Journal Article] lambda-Interferons and the single nucleotide polymorphisms : A milestone to tailor-made therapy for chronic hepatitis C2010

    • Author(s)
      Tanaka Y, Nishida N, et al., 他3名
    • Journal Title

      Hepatology Research

      Volume: 40(5) Pages: 449-460

    • Peer Reviewed
  • [Journal Article] Transcriptional regulation of endochondral ossification by HIF-2αduring skeletal growth and osteoarthritis development2010

    • Author(s)
      Saito T, Nishida N, et al., 他12名
    • Journal Title

      Nature Medicine

      Volume: 16(6) Pages: 678-686

    • Peer Reviewed
  • [Journal Article] Association analysis of susceptibility candidate region on chromosome 5q31 for tuberculosis2010

    • Author(s)
      Ridruechai C, Nishida N, et al., 他16名
    • Journal Title

      Genes & Immunity

      Volume: 11(5) Pages: 416-22

    • Peer Reviewed
  • [Presentation] The association of HLA-DP locus with chronic hepatitis B and viral clearance in Japanese and Korean2012

    • Author(s)
      Nishida N, Sawai H, Sugiyama M, Matsuura K, Han K-H, Koike A, Ahn SH, Tokunaga K, Tanaka Y, Mizokami M
    • Organizer
      Asian Pacific Association for the Study of the Liver 2012
    • Place of Presentation
      Taipei
    • Year and Date
      2012-02-19
  • [Presentation] A genome-wide association study identifies the ass ociation of HLA-DP locus with chro nic hepatitis B and viral clearance2011

    • Author(s)
      Nishida N, Sawai H, Mawatari Y, Y amaoka M, Koike A, Matsuura K, T anaka Y, Sugiyama M, Ito K, Mizok ami M, Tokunaga K
    • Organizer
      International Congress of Human G enetics 2011(61th Annual ASHG Meeting)
    • Place of Presentation
      Montr eal
    • Year and Date
      20111011-15
  • [Presentation] B型肝炎慢性化、B型肝炎ウイルス排除を規定するHLA-DP遺伝子の同定2011

    • Author(s)
      西田奈央,田中靖人,澤井裕美,杉山真也,馬渡頼子,提嶋恵美,小笠原有子,石橋良美,馬場菜津美,溝上雅史,徳永勝士
    • Organizer
      日本分子生物学会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2011-12-14
  • [Presentation] Short-acting 192-plex PCR with locus specific primers to detect single nucleotide polymorphisms by DigiTag2 assay2011

    • Author(s)
      馬渡頼子,提嶋恵美,西田奈央,徳永勝士
    • Organizer
      日本分子生物学会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2011-12-13
  • [Presentation] 統合化推進プログラムにおけるヒトゲノムバリエーションデータベース2011

    • Author(s)
      小池麻子,西田奈央,吉田真希子,井ノ上逸朗,辻省次,徳永勝士
    • Organizer
      日本DNA多型学会第20回学術集会
    • Place of Presentation
      はまぎんホールヴィアマーレ
    • Year and Date
      2011-12-01
  • [Presentation] The association of HLA-DP locus with chronic hepatitis B and viral clearance2011

    • Author(s)
      Nishida N, Sawai H, Mawatari Y, Yamaoka M, Matsuura K, Tanaka Y, Sugiyama M, Ito K, Tokunaga K, Mizokami M
    • Organizer
      American Association for the study of Liver Diseases The Liver Meeting 2011
    • Place of Presentation
      San Fransisco
    • Year and Date
      2011-11-05
  • [Presentation] Genome-wide association study(GWAS) opens a new approach to identify host genetic factors for multifactorial diseases2010

    • Author(s)
      Nishida N
    • Organizer
      Asian Hepatitis Forum
    • Place of Presentation
      Tokyo Disney Sea Hotel MIRACOSTA
    • Year and Date
      2010-12-16
  • [Presentation] C型慢性肝炎に対するペグインターフェロン+リバビリン併用療法の有効性を規定するホスト側遺伝要因の同定2010

    • Author(s)
      西田奈央,田中靖人,杉山真也,小池麻子,提嶋恵美,小笠原有子,石橋良美,柴田靖加,溝上雅史,徳永勝士
    • Organizer
      日本分子生物学会
    • Place of Presentation
      神戸ポートアイランド
    • Year and Date
      2010-12-10
  • [Presentation] C型慢性肝炎に対するペグインターフェロン+リバビリン併用療法の有効性を規定するIL28B遺伝子の同定2010

    • Author(s)
      西田奈央,田中靖人,杉山真也,小池麻子,提嶋恵美,小笠原有子,石橋良美,柴田靖加,溝上雅史,徳永勝士
    • Organizer
      日本人類遺伝学会第55回大会
    • Place of Presentation
      大宮ソニックシティ
    • Year and Date
      2010-10-30
  • [Presentation] Genome-wide screening to identify host genetic factors for hepatitis and developing a public database "Human Genome Variation Database"2010

    • Author(s)
      Nishida N
    • Organizer
      2010 Translational Research Excellence Conference
    • Place of Presentation
      Brisbane Convention & Exhibition Centre
    • Year and Date
      2010-10-11

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Published: 2013-07-31   Modified: 2015-12-15  

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