• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to project page

2011 Fiscal Year Final Research Report

Development of artificial aminoacylated tRNA with high efficiency of turnover

Research Project

  • PDF
Project/Area Number 22750146
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeSingle-year Grants
Research Field Chemistry related to living body
Research InstitutionTokyo Institute of Technology

Principal Investigator

OHKUBO Akihiro  東京工業大学, 大学院・生命理工学研究科, 助教 (60376960)

Project Period (FY) 2010 – 2011
KeywordsRNA合成 / アミノアシルtRNA / ホスホロアミダイト法 / アミノ酸 / 固相合成
Research Abstract

In this study we could synthesize base-labile aminoacylated RNA oligonucleotides using N-unprotected 5'-phosphoramidite RNA units on the nucleoside-loaded polymer supports via a silyl linker which can be cleaved under neutral conditions. These results have prompted us to study the property of the RNA complexes between the aminoasylated RNAs and corresponding 5'-long RNAs. These additional studies are now underway.

  • Research Products

    (21 results)

All 2012 2011 2010 Other

All Journal Article (13 results) Presentation (7 results) Remarks (1 results)

  • [Journal Article] Formation of new base pairs between inosine and 5-methyl-2-thiocytidine derivatives2012

    • Author(s)
      A. Ohkubo, Y. Nishino, Y. Ito, H. Tsunoda, K. Seio, and M. Sekine
    • Journal Title

      Org. Biomol. Chem.

      Volume: 10 Pages: 2008-2010

  • [Journal Article] Development of an efficient method for phosphorodiamidate bond formation by using inorganic salts.2012

    • Author(s)
      T. Harakawa, H. Tsunoda, A. Ohkubo, K. Seio, and M. Sekine
    • Journal Title

      Bioorg. Med. Chem. Lett

      Volume: 22 Pages: 1445-1447

  • [Journal Article] Synthesis of 5'-Terminal Capped Oligonucleotide using O. N Phosphoryl Migration of Phosphoramidite Derivatives2012

    • Author(s)
      A. Ohkubo, N. Tago, A. Yokouchi, Y. Nishino, K. Yamada, H. Tsunoda, K. Seio, M. Sekine
    • Journal Title

      Org. Lett.

      Volume: 14 Pages: 10-13

  • [Journal Article] Short-RNA selective binding of oligonucleotides modified using adenosine and guanosine derivatives that possess cyclohexyl phosphates as substituents2012

    • Author(s)
      K. Seio, S. Kurohagi, E. Kodama, H. Tsunoda, A. Ohkubo and M. Sekine
    • Journal Title

      Org. Biomol. Chem.

      Volume: 10 Pages: 994-1006

  • [Journal Article] DNA duplexes and triplex-forming oligodeoxynucleotides incorporating modified nucleosides forming stable and selective triplexes2012

    • Author(s)
      T. Kanamori, Y. Masaki, M. Mizuta, H. Tsunoda, A. Ohkubo, M. Sekine, K. Seio
    • Journal Title

      Org. Biomol. Chem.

      Volume: 10 Pages: 1007-1013

  • [Journal Article] Stable triplex formation using the strong stacking effect of consecutive thionucleoside moieties2011

    • Author(s)
      Y. Ito, Y. Noma, Y. Kakishima, Y. Masaki, H. Tsunoda, K. Seio, M. Sekine
    • Journal Title

      Chem. Comm

      Volume: 47 Pages: 12556-12558

  • [Journal Article] Biochemical behavior of N-oxidized cytosine and adenine bases in DNA polymerase-mediated primer extension reactions2011

    • Author(s)
      H. Tsunoda, T. Kudo, Y. Masaki, A. Ohkubo, K. Seio, M. Sekine
    • Journal Title

      Nucleic Acids Res

      Volume: 39 Pages: 2995-3004

  • [Journal Article] Synthesis of 2'-O-[ 2-(N-Methylcarbamoyl) ethyl] ribon ucleosides Using Oxa-Michael Reaction and Chemical and Biological Properties of Oligonucleotide Derivatives Incorporating These Modified Ribonucleosides2011

    • Author(s)
      Y. Takeshi, N. Okaniwa, H. Saneyoshi, A. Ohkubo, K. Seio, T. Nagata, Y. Aoki, S. Takeda, M. Sekine
    • Journal Title

      J. Org. Chem

      Volume: 76 Pages: 3042-3053

  • [Journal Article] Synthesis and triplex-forming properties of oligonucleotides containing thio-substituted C-nucleoside 4-thiopseudoisocytidine2011

    • Author(s)
      S. Cao, I. Okamoto, H. Tsunoda, A. Ohkubo, K. Seio, M. Sekine
    • Journal Title

      Tetrahedron Lett.

      Volume: 52 Pages: 407-410

  • [Journal Article] Synthesis and hybridization properties of 2'-O-methylated oligoribonucleotides incorporating 2'-O-naphthyluridines2011

    • Author(s)
      M. Sekine, Y. Oeda, Y. Iijima, H. Taguchi, A. Ohkubo, K. Seio
    • Journal Title

      Org. Biomol. Chem

      Volume: 9 Pages: 210-218

  • [Journal Article] Synthesis of oligodeoxynucleotides using fully protected deoxynucleoside 3'-phosphoramidite building blocks and base recognition of oligodeoxynucleotides incorporating N3-cyano-ethylthymine2010

    • Author(s)
      H. Tsunoda, T. Kudo, A. Ohkubo, K. Seio, M. Sekine
    • Journal Title

      Molecules

      Volume: 15 Pages: 7509-7531

  • [Journal Article] Insights into the DNA stabilizing contributions of a bicyclic cytosine analogue : crystal structures of DNA duplexes containing 7, 8-dihydropyrido[ 2, 3-d] pyrimidin-2-one. E. C. M. Juan2010

    • Author(s)
      S. Shimizu, X. Ma, T. Kurose, T. Haraguchi, F. Zhang, M. Tsunoda, A. Ohkubo, M. Sekine, T. Shibata, C. L. Millington, D. M. Williams, A. Takenaka
    • Journal Title

      Nucleic Acids Res

      Volume: 38 Pages: 6737-6745

  • [Journal Article] Synthesis and properties of cationic 2'-O-[ N-(4-aminobutyl) carbamoyl] modified oligonucleotides.

    • Author(s)
      K. Seio, M. Tokugawa, T. Kanamori, H. Tsunoda, A. Ohkubo, M. Sekine
    • Journal Title

      Bioorg. Med. Chem. Lett.

      Volume: (in press)

  • [Presentation] Synthesis and Properties of Oligonucleotides having 5'-terminal 2, 2, 7-trimethylguanosine cap Analogues2011

    • Author(s)
      Akihiro Ohkubo, Akira Yokouchi, Ken Yamada, Hirosuke Tsunoda, Kohji Seio, Mitsuo Sekine
    • Organizer
      7th Annual Meeting of the Oligonucleotide Therapeutics Society
    • Place of Presentation
      The Royal Library, Copenhagen, Denmark
    • Year and Date
      20110908-10
  • [Presentation] Synthesis and Properties of Oligonucleotides having 5'-terminal 2, 2, 7-trimethylguanosine cap Analogues 6th Cambridge Symposium on Nucleic Acids Chemistry and Biology2011

    • Author(s)
      Akihiro Ohkubo, Akira Yokouchi, Ken Yamada, Hirosuke Tsunoda, Kohji Seio, Mitsuo Sekine
    • Organizer
      Queens' College
    • Place of Presentation
      Cambridge, UK
    • Year and Date
      20110904-07
  • [Presentation] Synthesis and triplex formation of RNAs containing 8-thioxoadenine and 2-thiopyrimidine RNA20112011

    • Author(s)
      Akihiro Ohkubo, Yu Ito, Yudai Nishino, Akira Yokouchi, Hirosuke Tsunoda, Kohji Seio, Mitsuo Sekine
    • Organizer
      the 16th Annual Meeting of the RNA Society and The RNA Society of Japan 13th Annual Meeting
    • Place of Presentation
      国立京都国際会館
    • Year and Date
      20110614-18
  • [Presentation] Synthesis and Properties of Oligonucleotides Having 5'-Terminal 2, 2, 7-Trimethylguanosine cap Analogues RNA20112011

    • Author(s)
      Akira Yokouchi, Ken Yamada, Hirosuke Tsunoda, Akihiro Ohkubo, Kohji Seio, Mitsuo Sekine.
    • Organizer
      the 16th Annual Meeting of the RNA Society and The RNA Society of Japan 13th Annual Meeting
    • Place of Presentation
      国立京都国際会館
    • Year and Date
      20110614-18
  • [Presentation] SYNTHESIS AND TRIPLEX FORMING OF OLIGONUCLEOTIDES CONTAINING 8-THIOXOADENINE AND 2-THIOPYRIMIDINE IRT 2010-XIX2010

    • Author(s)
      Akihiro Ohkubo, Yudai Nishino, Yuki Kakishima, Hirosuke Tsunoda, Kohji Seio, Mitsuo Sekine
    • Organizer
      International Round Table on Nucleosides, Nucleotides and Nucleic Acids
    • Place of Presentation
      Batiment CPE(Rue Victor Grignard), Universite Claude Bernard Lyon 1, France
    • Year and Date
      20100829-0903
  • [Presentation] 2-チオピリミジンおよび8-チオキソプリンを含む修飾RANの三2010

    • Author(s)
      大窪章寛、西野雄大、柿島祐樹、正木慶昭、角田浩佑、清尾康志、関根光雄
    • Organizer
      重鎖形成能第12回日本RNA学会年会
    • Place of Presentation
      一橋記念講堂:学術総合センター
    • Year and Date
      20100727-29
  • [Presentation] 塩基性条件下不安定な機能性RNAの新規合成法の開発2010

    • Author(s)
      大窪章寛、角田浩佑、清尾康志、関根光雄
    • Organizer
      第98回有機合成シンポジウム
    • Place of Presentation
      早稲田大学
    • Year and Date
      2010-11-05
  • [Remarks]

    • URL

      http://www.skn.bio.titech.ac.jp/

URL: 

Published: 2013-07-31  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi