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2023 Fiscal Year Research-status Report

Artificial Intelligence analysis of the immune-checkpoint and immuno-oncology in B-cell non-Hodgkin lymphoma

Research Project

Project/Area Number 23K06454
Research InstitutionTokai University

Principal Investigator

カレーラス ジュアキム  東海大学, 医学部, 講師 (90637191)

Project Period (FY) 2023-04-01 – 2026-03-31
Keywordslymphoma / targeted sequencing / immuno-oncology / immune microenvironment / immune checkpoint / molecular pathology / hematological neoplasia / NGS
Outline of Annual Research Achievements

BCL6-rearrangement (BCL6-R) is associated with a favorable prognosis of follicular lymphoma (FL), but the mechanism is unknown. We analyzed the clinicopathological, immune microenvironment (immune checkpoint, immuno-oncology markers), and mutational profiles of 10 BCL6-R-positive FL, and 19 BCL6-R-positive diffuse large B-cell lymphoma (DLBCL) cases (both BCL2-R and MYC-R negative). A custom-made panel included 168 genes related to aggressive B-cell lymphomas and FL. Both BCL6-R-positive FL and BCL6-R-positive DLBCL had a common mutational profile; but also, differences. DLBCL cases had a higher density of microenvironment markers.

Current Status of Research Progress
Current Status of Research Progress

2: Research has progressed on the whole more than it was originally planned.

Reason

The project is progressing well, and as expected.

Strategy for Future Research Activity

We will continue the evaluation of immuno-oncology markers in larger series of cases and plan next set of NGS analysis.

Causes of Carryover

Since NGS mutational profile is very expensive, some amount from first year was moved to second year.

Remarks

The following internet sites connect to the research outputs.
Most of the results are in Open Access Journals (DOAJ).

  • Research Products

    (18 results)

All 2024 2023 Other

All Journal Article (7 results) (of which Int'l Joint Research: 7 results,  Peer Reviewed: 7 results,  Open Access: 7 results) Presentation (6 results) (of which Invited: 1 results) Remarks (5 results)

  • [Journal Article] Mutational, immune microenvironment, and clinicopathological profiles of diffuse large B-cell lymphoma and follicular lymphoma with BCL6 rearrangement2024

    • Author(s)
      Carreras Joaquim、Ikoma Haruka、Kikuti Yara Yukie、Miyaoka Masashi、Hiraiwa Shinichiro、Tomita Sakura、Kondo Yusuke、Ito Atsushi、Nagase Shunsuke、Miura Hisanobu、Kawada Hiroshi、Roncador Giovanna、Campo Elias、Hamoudi Rifat、Nakamura Naoya
    • Journal Title

      Virchows Archiv

      Volume: 484 Pages: 657~676

    • DOI

      10.1007/s00428-024-03774-z

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Artificial Intelligence, Lymphoid Neoplasms, and Prediction of MYC, BCL2, and BCL6 Gene Expression Using a Pan-Cancer Panel in Diffuse Large B-Cell Lymphoma2024

    • Author(s)
      Carreras Joaquim、Nakamura Naoya
    • Journal Title

      Hemato

      Volume: 5 Pages: 119~143

    • DOI

      10.3390/hemato5020011

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Artificial Intelligence Analysis and Reverse Engineering of Molecular Subtypes of Diffuse Large B-Cell Lymphoma Using Gene Expression Data2024

    • Author(s)
      Carreras Joaquim、Yukie Kikuti Yara、Miyaoka Masashi、Miyahara Saya、Roncador Giovanna、Hamoudi Rifat、Nakamura Naoya
    • Journal Title

      BioMedInformatics

      Volume: 4 Pages: 295~320

    • DOI

      10.3390/biomedinformatics4010017

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Tumor heterogeneity and immune-evasive T follicular cell lymphoma phenotypes at single-cell resolution2023

    • Author(s)
      Suma S, Suehara Y, Fujisawa M, Abe Y, Hattori K, Makishima K, Sakamoto T, Sawa A, Bando H, Kaji D, Sugio T, Kato K, Akashi K, Matsue K, Carreras J, Nakamura N, Suzuki A, Suzuki Y, Ito K, Shiiba H, Chiba S, Sakata-Yanagimoto M
    • Journal Title

      Leukemia

      Volume: 38 Pages: 340~350

    • DOI

      10.1038/s41375-023-02093-7

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Hepatic niche leads to aggressive natural killer cell leukemia proliferation through transferrin-transferrin receptor 1 axis2023

    • Author(s)
      Kameda K, Yanagiya R, Miyatake Y, Carreras J, Higuchi H, Murayama H, Ishida T, Ito A, Iida S, Fukuhara N, Harigae H, Fujioka Y, Takahashi N, Wada H, Ishida F, Nakazawa H, Ishihara R, Murakami Y, Tagawa H, Matsuura T, Nakagawa S, Iwabuchi S, Hashimoto S, Imadome KI, Nakamura N, Ishizawa K, Kanda Y, Ando K, Kotani A
    • Journal Title

      Blood Journal

      Volume: 142 Pages: 352~364

    • DOI

      10.1182/blood.2022018597

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Mutational Profile and Pathological Features of a Case of Interleukin-10 and RGS1-Positive Spindle Cell Variant Diffuse Large B-Cell Lymphoma2023

    • Author(s)
      Carreras Joaquim、Kikuti Yara Yukie、Miyaoka Masashi、Hiraiwa Shinichiro、Tomita Sakura、Ikoma Haruka、Kondo Yusuke、Ito Atsushi、Nagase Shunsuke、Miura Hisanobu、Roncador Giovanna、Colomo Lluis、Hamoudi Rifat、Campo Elias、Nakamura Naoya
    • Journal Title

      Hematology Reports

      Volume: 15 Pages: 188~200

    • DOI

      10.3390/hematolrep15010020

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] The pathobiology of follicular lymphoma2023

    • Author(s)
      Carreras Joaquim
    • Journal Title

      Journal of Clinical and Experimental Hematopathology

      Volume: 63 Pages: 152~163

    • DOI

      10.3960/jslrt.23014

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Presentation] My research life in Japan2024

    • Author(s)
      Carreras Joaquim
    • Organizer
      第113回日本病理学会総会
    • Invited
  • [Presentation] Gene expression and mutational profile of PD-L1 positive diffuse large B-cel l lymphoma2024

    • Author(s)
      Carreras Joaquim
    • Organizer
      第113回日本病理学会総会
  • [Presentation] High Expression of Caspase-8 Associated with Improved Survival in Diffuse Large B-Cell Lymphoma2023

    • Author(s)
      Carreras Joaquim
    • Organizer
      第112回日本病理学会総会
  • [Presentation] P-44. High PD-L1 expression correlated with poor prognosis of diffuse large B-cell lymphoma2023

    • Author(s)
      Carreras Joaquim
    • Organizer
      第63回日本リンパ網内系学会学術集会・総会
  • [Presentation] P-66. Surface CD3陰性Monomorphic epitheliotropic intestinal T-cell lymphoma 3例の遺伝子変異解析2023

    • Author(s)
      冨田さくら, Joaquim Carreras, 菊池イアーラ幸江, 堂本英治, Edoardo Missiaglia, Justine Bouilly, Andrey Leourneau, Laurence de Leval
    • Organizer
      第63回日本リンパ網内系学会学術集会・総会
  • [Presentation] P-68. Nodal marginal zone lymphomaの遺伝子発現解析2023

    • Author(s)
      生駒悠, Carreras Joaquim, 菊池イアーラ幸江, 中村直哉
    • Organizer
      第63回日本リンパ網内系学会学術集会・総会
  • [Remarks] Research Activities of Joaquim Carreras

    • URL

      http://carreras.med.u-tokai.ac.jp/

  • [Remarks] ORCID

    • URL

      https://orcid.org/0000-0002-6129-8299

  • [Remarks] Researchgate of Joaquim Carreras

    • URL

      https://www.researchgate.net/profile/Joaquim-Carreras

  • [Remarks] Loop Joaquim Carreras

    • URL

      https://loop.frontiersin.org/people/956781/publications

  • [Remarks] Scilit Joaquim Carreras

    • URL

      https://www.scilit.net/scholars/9538763

URL: 

Published: 2024-12-25  

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