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Development of bacterium fusion device to control multi molecular crowding environment in cytosol

Planned Research

Project AreaChemical Approaches for Miscellaneous / Crowding Live Systems
Project/Area Number 17H06355
Research Category

Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)

Allocation TypeSingle-year Grants
Review Section Science and Engineering
Research InstitutionThe University of Tokyo

Principal Investigator

Tabata Kazuhito  東京大学, 大学院工学系研究科(工学部), 准教授 (50403001)

Project Period (FY) 2017-06-30 – 2022-03-31
Project Status Completed (Fiscal Year 2021)
Budget Amount *help
¥104,650,000 (Direct Cost: ¥80,500,000、Indirect Cost: ¥24,150,000)
Fiscal Year 2021: ¥19,500,000 (Direct Cost: ¥15,000,000、Indirect Cost: ¥4,500,000)
Fiscal Year 2020: ¥19,500,000 (Direct Cost: ¥15,000,000、Indirect Cost: ¥4,500,000)
Fiscal Year 2019: ¥19,500,000 (Direct Cost: ¥15,000,000、Indirect Cost: ¥4,500,000)
Fiscal Year 2018: ¥19,500,000 (Direct Cost: ¥15,000,000、Indirect Cost: ¥4,500,000)
Fiscal Year 2017: ¥26,650,000 (Direct Cost: ¥20,500,000、Indirect Cost: ¥6,150,000)
Keywordsマイクロチャンバー / オスモライト / micro-TAS / micro TAS / 脂質二重膜 / チャンバー / 1細胞 / microchamber / インルルエンザウイルス / 人工細胞 / MEMS / 合成生物学 / マイクロデバイス / 溶液交換 / 構成的生物学 / 無細胞合成 / クラウディング / 細胞サイズ
Outline of Final Research Achievements

In order to investigate the effect of intracellular multimolecular crowding environment on biological functions, we developed devices to construct and control artificial multimolecular crowding environment. First, we prepared a device in which E. coli was fused into a microchamber to control the intracellular multimolecular crowding environment, and examined its transcriptional and translational activities against the degree of cytoplasmic dilution, but no correlation was found between them. An artificial multimolecular crowding environment was subsequently prepared by osmolyte molecules and correlated with the activity of the in vitro transcription-translation system, and the effect was observed for several proteins. We also developed a system that enables continuous solution exchange in a microchamber device, and succeeded in developing a system that changes osmolarity by changing the solution in and out of the chamber.

Academic Significance and Societal Importance of the Research Achievements

これまで細胞内夾雑環境に関する研究はたくさんの細胞を対象としたバルクでの研究が多く、全体の平均としての結果しかわからなかった。今回、1細胞を対象に研究を進めたところ、それぞれ異なる反応を示し、分布を形成していることがわかった。また、細胞内に大量に存在する低分子オスモライトが、タンパク質の転写翻訳に影響を与えていることもわかった。さらには、細胞内夾雑環境を積極的に制御するための手法として、浸透圧を利用し、融合細胞のサイズを変える方法も開発している。これらの成果は細胞内夾雑環境と生命活動が密接に関わっていることを示唆しており、今後の研究につながる成果となっている。

Report

(6 results)
  • 2021 Annual Research Report   Final Research Report ( PDF )
  • 2020 Annual Research Report
  • 2019 Annual Research Report
  • 2018 Annual Research Report
  • 2017 Annual Research Report
  • Research Products

    (21 results)

All 2022 2021 2020 2019 2018

All Journal Article (8 results) (of which Peer Reviewed: 8 results,  Open Access: 8 results) Presentation (11 results) (of which Int'l Joint Research: 4 results,  Invited: 11 results) Patent(Industrial Property Rights) (2 results)

  • [Journal Article] A microreactor sealing method using adhesive tape for digital bioassays2022

    • Author(s)
      Yaginuma, H., Ohtake, K., Akamatsu,T., Noji, H., Tabata, K.V.
    • Journal Title

      Lab on a chip

      Volume: - Issue: 10 Pages: 2001-2010

    • DOI

      10.1039/d2lc00065b

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Amplification of Over 100 kbp DNA from Single Template Molecules in Femtoliter Droplets2021

    • Author(s)
      Ueno,H., Sawada,H., Soga,N., Sano,M., Nara,S., Tabata,K.V., Su’etsugu, M., Noji,H.
    • Journal Title

      ACS Synthetic Biology

      Volume: 10 Issue: 9 Pages: 2179-2186

    • DOI

      10.1021/acssynbio.0c00584

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] A synthetic ion channel with anisotropic ligand response2020

    • Author(s)
      Muraoka Takahiro, Noguchi Daiki, Kasai Rinshi, Sato Kohei, Sasaki Ryo, Tabata Kazuhito, Ekimoto Toru, Ikeguchi Mitsunori, Kamagata Kiyoto, Hoshino Norihisa, Noji Hiroyuki, Akutagawa Tomoyuki, Ichimura Kazuaki, Kinbara Kazushi
    • Journal Title

      Nature Communications

      Volume: 11 Issue: 1 Pages: 2924-2924

    • DOI

      10.1038/s41467-020-16770-z

    • NAID

      120006878529

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Revealing the Metabolic Activity of Persisters in Mycobacteria by Single-Cell D2O Raman Imaging Spectroscopy.2019

    • Author(s)
      Ueno H, Kato Y, Tabata KV, Noji H.
    • Journal Title

      Anal Chem.

      Volume: 91 Issue: 23 Pages: 15171-15178

    • DOI

      10.1021/acs.analchem.9b03960

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Accurate high-throughput screening based on digital protein synthesis in a massively parallel femtoliter droplet array2019

    • Author(s)
      Yi Zhang, Yoshihiro Minagawa, Hiroto Kizoe, Kentaro Miyazaki, Ryota Iino, Hiroshi Ueno, Kazuhito V Tabata, Yasuhiro Shimane, Hiroyuki Noji
    • Journal Title

      Science Advances

      Volume: 5 Issue: 8 Pages: 1-11

    • DOI

      10.1126/sciadv.aav8185

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Regeneration of Escherichia coli giant protoplasts to their original form.2019

    • Author(s)
      *Tabata KV, Sogo T, Moriizumi Y, Noji H.
    • Journal Title

      Life

      Volume: 9 Issue: 1 Pages: 1-10

    • DOI

      10.3390/life9010024

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Osmolyte-Enhanced Protein Synthesis Activity of a Reconstituted Translation System2019

    • Author(s)
      Moriizumi Yoshiki、Tabata Kazuhito V.、Miyoshi Daisuke、Noji Hiroyuki
    • Journal Title

      ACS Synthetic Biology

      Volume: 8 Issue: 3 Pages: 557-567

    • DOI

      10.1021/acssynbio.8b00513

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Hybrid cell reactor system from Escherichia coli protoplast cells and arrayed lipid bilayer chamber device.2018

    • Author(s)
      Moriizumi Y, *Tabata KV, Watanabe R, Doura T, Kamiya M, Urano Y, Noji H.
    • Journal Title

      Sci Rep.

      Volume: 8 Issue: 1 Pages: 1-13

    • DOI

      10.1038/s41598-018-30231-0

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Presentation] Single-virus measurement reveals virus populations2021

    • Author(s)
      Tabata KV.
    • Organizer
      Pacifichem 2021
    • Related Report
      2021 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] In vitro genome amplification and editing2021

    • Author(s)
      Tabata KV.
    • Organizer
      Minmal Cell Workshop
    • Related Report
      2021 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Single virus measurements -Highly sensitive detection and distribution of virus populations-2020

    • Author(s)
      田端 和仁
    • Organizer
      2nd WPI-NanoLSI Special Seminar -Frontiers in Chem-Bio-
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] マイクロデバイスにバクテリアを融合する2019

    • Author(s)
      田端和仁
    • Organizer
      第92回日本生化学会
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] マイクロチャンバーでつくるとはかる2019

    • Author(s)
      田端和仁
    • Organizer
      日本分析化学会第68年会
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] デジタルアッセイが生み出す技術革新2019

    • Author(s)
      田端和仁
    • Organizer
      2019年度第2回バイオマイクロナノテク研究会
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] バクテリアを微小容器に再構成する2019

    • Author(s)
      田端和仁
    • Organizer
      第13回日本ゲノム微生物学会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] 細胞内夾雑環境をマイクロデバイス内に作り込む2018

    • Author(s)
      田端和仁
    • Organizer
      第18回日本蛋白質科学会年会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] Toward reproduction of a bacterium from hybrid cell2018

    • Author(s)
      Kazuhito V. Tabata
    • Organizer
      Artificial Cell Reactor Science and Technology
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] High sensitive measurement system and bacterium reconstitution by microchamber2018

    • Author(s)
      Kazuhito V. Tabata
    • Organizer
      JSSB seminar
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Bacterium reconstitution in microchamber towards genome transplantation and high sensitive detection of flu virus.2018

    • Author(s)
      Kazuhito V. Tabata
    • Organizer
      JCVI seminar
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Patent(Industrial Property Rights)] デジタルアッセイ方法及びデジタルアッセイキット2021

    • Inventor(s)
      田端 和仁、柳沼 秀幸、野地 博行
    • Industrial Property Rights Holder
      田端 和仁、柳沼 秀幸、野地 博行
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2021-140677
    • Filing Date
      2021
    • Related Report
      2021 Annual Research Report
  • [Patent(Industrial Property Rights)] 酵素反応生成物の検出方法2018

    • Inventor(s)
      田端和仁
    • Industrial Property Rights Holder
      田端和仁
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2018-037085
    • Filing Date
      2018
    • Related Report
      2017 Annual Research Report

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Published: 2017-07-04   Modified: 2023-01-30  

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