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Analysis of diversity of ubiquitin ligase

Planned Research

Project AreaProteolysis in the Regulation of Biological Processes
Project/Area Number 18076001
Research Category

Grant-in-Aid for Scientific Research on Priority Areas

Allocation TypeSingle-year Grants
Review Section Biological Sciences
Research InstitutionNagoya University

Principal Investigator

TAKUMI Kamura (KAMURA Takumi)  Nagoya University, 理学研究科, 教授 (40333455)

Co-Investigator(Kenkyū-buntansha) SHIGETSUGU Hatakeyama  北海道大学, 大学院・医学研究科, 教授 (70294973)
Project Period (FY) 2006 – 2010
Project Status Completed (Fiscal Year 2010)
Budget Amount *help
¥140,900,000 (Direct Cost: ¥140,900,000)
Fiscal Year 2010: ¥30,000,000 (Direct Cost: ¥30,000,000)
Fiscal Year 2009: ¥30,000,000 (Direct Cost: ¥30,000,000)
Fiscal Year 2008: ¥30,000,000 (Direct Cost: ¥30,000,000)
Fiscal Year 2007: ¥30,000,000 (Direct Cost: ¥30,000,000)
Fiscal Year 2006: ¥20,900,000 (Direct Cost: ¥20,900,000)
Keywordsタンパク質分解 / ユビキチン
Research Abstract

Ubiquitylation and subsequent proteasomal degradation of regulatory proteins control a variety of cellular processes. The ubiquitin conjugation to target proteins is processed by three enzymes, E1, E2, and E3. The E3s are responsible for recognizing and recruiting target proteins for polyubiquitylation. Cullin-based E3 complexes and TRIM E3 families are thought to regulate many cellular events. In this research, we try to clarify the function of Cullin-based E3 complexes and TRIM E3 families. Now we show that Cullin-based E3 complexes are responsible for regulating the function of Mrc1, Ctf4, Elongin A, p53, and Ypt53. We also identify that Lag2 negatively modulate the activity of SCF complex. Finally, we demonstrate that TRIM E3 families control the function of estrogen receptor, androgen receptor, Abi2, p53, PIAS3 and Ikkγ. These observations thus idicate that Cullin-based E3 complexes and TRIM E3 families plays an important role in a variety of cellular processes by regulating the function of many target proteins.

Report

(7 results)
  • 2010 Annual Research Report   Final Research Report ( PDF )
  • 2009 Annual Research Report
  • 2008 Annual Research Report   Self-evaluation Report ( PDF )
  • 2007 Annual Research Report
  • 2006 Annual Research Report
  • Research Products

    (62 results)

All 2011 2010 2009 2008 2007 2006 Other

All Journal Article (37 results) (of which Peer Reviewed: 35 results) Presentation (18 results) Book (1 results) Remarks (6 results)

  • [Journal Article] Non-SCF type F-box protein Roy1/Ymr258c interacts with a Ra b5-like G TPase Yp t52 a nd inhibits Ypt52 function.2011

    • Author(s)
      Liu, Y., Nakatsukasa, K., Kotera, M., Kanada, A., Nishimura, T., Kishi, T., Mimura, S., Kamura, T.
    • Journal Title

      Mol.Biol.Cell 22

      Pages: 1575-1584

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Non-SCF type F-box protein Roy1/Ymr258c interacts with a Rab5-like GTPase Ypt52 and inhibits Ypt52 function2011

    • Author(s)
      Liu Y, et al
    • Journal Title

      Molecular Biology of the Cell

      Volume: (印刷中)

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] MDA-9/syntenin interacts with ubiquitin via a novel ubiquitin-binding motif.2011

    • Author(s)
      Okumura F, et al
    • Journal Title

      Mol Cell Biochem

      Volume: (印刷中)

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] RNF43 interacts with NEDL1 and regulates p53-mediated transcription.2011

    • Author(s)
      Shinada K, et al
    • Journal Title

      Biochem Biophys Res Commun

      Volume: 404 Pages: 143-147

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Cul8/Rtt101 forms a variety of protein complexes that regulate DNA damage response and transcriptional silencing.2010

    • Author(s)
      Mimura, S., Yamaguchi, T., Ishii, S., Noro, E ., Katsura, T., Obuse, C ., Kamura, T.
    • Journal Title

      J.Biol.Chem. 285

      Pages: 9858-9867

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] TRIM8 modulates STAT3 activity through negative regulation of PIAS32010

    • Author(s)
      Okumura, F., Matsunaga, Y., Katayama, Y., Nakayama, K.I., Hatakeyama, S.
    • Journal Title

      J.Cell.Sci. 123

      Pages: 2238-2245

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] TRIM8 modulates STAT3 activity through negative regulation of PIAS3.2010

    • Author(s)
      Okumura F, et al
    • Journal Title

      J Cell Sci

      Volume: 123 Pages: 2238-2245

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Cu18/Rtt101 forms a variety of protein complexes that regulate DNA damage response and transcriptional silencing.2010

    • Author(s)
      Mimura S, et al
    • Journal Title

      J.Biol.Chem. 2851

      Pages: 9858-9867

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] SCFDia2 regulates DNA replication forks during S-phase in budding yeast.2009

    • Author(s)
      Mimura, S., Komata, M ., K ishi, T., Shirahige, K., Kamura, T.
    • Journal Title

      EMBO J. 28

      Pages: 3693-3705

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] A longevity protein, Lag2, interacts with SCF complex and regulates SCF function.2009

    • Author(s)
      Liu, Y., Mimura, S., Kishi, T., Kamura, T.
    • Journal Title

      EMBO J. 28

      Pages: 3366-3377

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Degradation of phosphorylated p53 by viral protein-ECSE3 ligase complex.2009

    • Author(s)
      Sato, Y., Kamura, T., Shirata, N., Murata, T., Kudoh, A., Iwahori, S., Nakayama, S., Isomura, H., Nishiyama, Y., Tsurumi T.
    • Journal Title

      PLoS Pathog. 5(7)

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] SCF^<Dia2> regulates DNA replication forks during S-phase in budding yeast.2009

    • Author(s)
      Mimura S, et al
    • Journal Title

      EMBO J 28

      Pages: 3693-3705

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A longevity protein, Lag2, interacts with SCF complex and regulates SCF function.2009

    • Author(s)
      Liu Y, et al
    • Journal Title

      EMBO J 28

      Pages: 3366-3377

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Degradation of phosphorylated p53 by viral protein-ECS E3 ligase complex.2009

    • Author(s)
      Sato Y, et al
    • Journal Title

      PLoS Pathog 5

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] TRIM 36 interacts with the kinetochore protein CENP-H and delays cell cycle progression2009

    • Author(s)
      Miyajima N, et.al.
    • Journal Title

      Biochem. Biophys. Res. Commun 387

      Pages: 383-387

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Inhibition of NF-κB signaling via tyrosine phosphorylation of Ymer2009

    • Author(s)
      Kameda H, et.al.
    • Journal Title

      Biochem. Biophys. Res. Commun 378

      Pages: 44-749

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Riplet/RNF 135, a RING-finger protein, ubiquitinates RIG-I to promote interferon-β induction during the early phase of viral infection2009

    • Author(s)
      Oshiumi H, et.al.
    • Journal Title

      J. Biol. Chem 280

      Pages: 5611-5621

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Mammalian Elongin A complex mediates DNA-damage-inducedu biquitylation and degradation of Rpb1.2008

    • Author(s)
      Yasukawa, T., Kamura, T., Kitajima, S., Conaway, RC., Conaway, JW., Aso, T.
    • Journal Title

      EMBO J. 27

      Pages: 3256-3266

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] TRIM32 facilitates cell growth and migration via degradation of Abl-interactor 22008

    • Author(s)
      Kano, S., Miyajima, N., Fukuda, S., Hatakeyama, S.
    • Journal Title

      Cancer Res. 68

      Pages: 5572-5580

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] TRIM68 regulates ligand-dependent transcription of androgen receptor in prostate cancer cells2008

    • Author(s)
      Miyajima, N., Maruyama, S., Bohgaki, M., Kano, S., Shigemura, M., Shinohara, N., Nonomura, K., Hata keyama, S.
    • Journal Title

      Cancer Res. 68

      Pages: 3486-3494

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] TRIM32 facilitates cell growth and migration via degradation of Abl-interactor 22008

    • Author(s)
      Kano, S.,, Miyajima, N., Fukuda, S. and Hatakeyama, S.
    • Journal Title

      Cancer Res. 68

      Pages: 5572-5580

    • Related Report
      2008 Self-evaluation Report
    • Peer Reviewed
  • [Journal Article] Mammalian Elongin A complex mediates DNA-damage-induced ubiquitylation and degradation of Rpb1.2008

    • Author(s)
      Yasukawa, T., Kamura, T., Kitajima, S., Conaway, RC., Conaway, JW., Aso T.
    • Journal Title

      EMBO J. 27

      Pages: 3256-66

    • NAID

      120001871683

    • Related Report
      2008 Self-evaluation Report
    • Peer Reviewed
  • [Journal Article] TRIM68 regulates ligand-dependent transcription of androgen receptor in prostate cancer cells2008

    • Author(s)
      Miyajima, N., Maruyama, S., Bohgaki, M., Kano, S., Shigemura, M., Shinohara, N., Nonomura, K. and Hatakeyama, S.
    • Journal Title

      Cancer Res. 68

      Pages: 3486-3494

    • Related Report
      2008 Self-evaluation Report
    • Peer Reviewed
  • [Journal Article] Ro52 functionally interacts with IgG1 and regulates its quality control via the ERAD system2008

    • Author(s)
      Takahata, M., Bohgaki, M., Tsukiyama, T., Kondo, T., Asaka, M. and Hatakeyama, S.
    • Journal Title

      Mol.Immunol. 45

      Pages: 2045-2054

    • Related Report
      2008 Self-evaluation Report
    • Peer Reviewed
  • [Journal Article] Ubiquitylation of ε-COP by PIRH2 and regulation of the secretion of PSA2008

    • Author(s)
      Maruyama, S., Miyajima, N., Bohgaki, M., Tsukiyama, T., Shigemura, M., Nonomura, K. and Hatakeyama, S.
    • Journal Title

      Mol.Cell.Biochem. 307

      Pages: 73-82

    • Related Report
      2008 Self-evaluation Report
    • Peer Reviewed
  • [Journal Article] Mammalian Elongin A complex mediates DNA-damage-induced ubiquitylation and degradation of Rpb 12008

    • Author(s)
      Yasukawa T, et.al.
    • Journal Title

      EMBO J 27

      Pages: 3256-3266

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] TRIM 32 facilitates cell growth and migration via degradation of Ab 1-interactor 22008

    • Author(s)
      Kano S, et.al.
    • Journal Title

      Cancer Res 68

      Pages: 5572-5580

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] TRIM 68 regulates ligand-dependept transcription of androgen receptor in prostate cancer cells2008

    • Author(s)
      Niyajima N, et.al.
    • Journal Title

      Cancer Res 68

      Pages: 3486-3494

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] TRIM68 regulates ligand-dependent transcription of androgen receptor in prostate cancer cells.2008

    • Author(s)
      Miyajima, N, et. al.
    • Journal Title

      Cancer Res (in press)

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Involvement of Ymer in suppression of NF-κB activation by regulated interaction with lysine-63-linked polyubiquitin chain.2008

    • Author(s)
      Bohgaki, M, et. al.
    • Journal Title

      BBA-Mol. Cell Res 1784

      Pages: 826-837

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Ro52 functionally interacts with IgG1 and regulates its quality controlvia the ERAD system.2008

    • Author(s)
      Takahata, M, et. al.
    • Journal Title

      Mol. Immunol. 45

      Pages: 2045-2054

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Ubiquitylation of ε-COP by PIRH2 and regulation of the secretion of PSA2008

    • Author(s)
      Maruyama, S, et. al.
    • Journal Title

      Mol. Cell. Biochem. 307

      Pages: 73-82

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Involvement of Rabring7 in EGF receptor degradation as E3 ligase2007

    • Author(s)
      Sakane, A, et. al.
    • Journal Title

      Biochem. Biophys. Res. Commun. 357

      Pages: 1058-1064

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Ligand-dependent transcription of estrogen receptor α is mediated by the ubiquitin ligase EFP2007

    • Author(s)
      Nakajima, A, et. al.
    • Journal Title

      Biochem. Biophys. Res. Commun 357

      Pages: 245-251

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Establishment of a newly improved detection system for NF-κB activity.2007

    • Author(s)
      Matsuda, M
    • Journal Title

      Immunol. Lett. 109

      Pages: 175-181

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Fbxw8 is essential for Cul1-Cul7 complex formation and for placental development2006

    • Author(s)
      Tsunematsu, R et al.
    • Journal Title

      Mol. Cell. Boil. 26

      Pages: 6157-6169

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Fbxw7 contributes to tumor suppression by targeting multiple proteins for ubiquitin-dependent degradation2006

    • Author(s)
      Fujii, Y et al.
    • Journal Title

      Cancer Sci. 97

      Pages: 729-736

    • Related Report
      2006 Annual Research Report
  • [Presentation] ユビキチンリガーゼの制御機構2010

    • Author(s)
      嘉村巧
    • Organizer
      ユビキチンシンポジウム
    • Place of Presentation
      東京(シンポジウム)
    • Year and Date
      2010-08-21
    • Related Report
      2010 Final Research Report
  • [Presentation] Alongevity protein, Lag2, interactswith SCF complex and regulates SCFfunction.2010

    • Author(s)
      Takumi K amura, Yuan Liu
    • Organizer
      第33回日本分子生物学会年会・第83回日本生化学会大会合同大会
    • Place of Presentation
      神戸(シンポジウム)
    • Related Report
      2010 Final Research Report
  • [Presentation] A longevityprotein, Lag2, interacts with SCF complex and regulates SCF function.2010

    • Author(s)
      嘉村巧, 等
    • Organizer
      第33回日本分子生物学会年会
    • Place of Presentation
      神戸
    • Related Report
      2010 Annual Research Report
  • [Presentation] Regulatory mechanisms for the membrane extraction of polytopic ERAD substreate at a post-ubiquitination step.2010

    • Author(s)
      中務邦雄, 等
    • Organizer
      第33回日本分子生物学会年会
    • Place of Presentation
      神戸
    • Related Report
      2010 Annual Research Report
  • [Presentation] ECV^<VHL>複合体によって分解される新規基質の同定2010

    • Author(s)
      金森正和, 等
    • Organizer
      第33回日本分子生物学会年会
    • Place of Presentation
      神戸
    • Related Report
      2010 Annual Research Report
  • [Presentation] ECV^<VHL>複合体のユビキチンシステムにおける機能解析2010

    • Author(s)
      中野きりは, 等
    • Organizer
      第33回日本分子生物学会年会
    • Place of Presentation
      神戸
    • Related Report
      2010 Annual Research Report
  • [Presentation] 出芽酵母F-boxタンパク質Met30の機能解析2009

    • Author(s)
      日置灯美, 等
    • Organizer
      第32回日本分子生物学会年会
    • Place of Presentation
      横浜
    • Related Report
      2009 Annual Research Report
  • [Presentation] 出芽酵母SCFDia2によるDNA複製フォークの制御2009

    • Author(s)
      三村覚, 等
    • Organizer
      第32回日本分子生物学会年会
    • Place of Presentation
      横浜
    • Related Report
      2009 Annual Research Report
  • [Presentation] 膜タンパク質の小胞体関連分解(ERAD)の生化学的および遺伝学的手法による解析2009

    • Author(s)
      中務邦雄, 等
    • Organizer
      第32回日本分子生物学会年会
    • Place of Presentation
      横浜
    • Related Report
      2009 Annual Research Report
  • [Presentation] P 80, a novel Cdc 53 interacting protein, regulates the function of SCF complex2008

    • Author(s)
      Liu Y, et.al.
    • Organizer
      第31回日本分子生物学会年会・第81回日本生化学会大会合同大会
    • Place of Presentation
      神戸
    • Related Report
      2008 Annual Research Report
  • [Presentation] 安定なDNA複製に関わる出芽酵母F-box蛋白質Dia2の解析2008

    • Author(s)
      三村覚, 等
    • Organizer
      第31回日本分子生物学会年会・第81回日本生化学会大会合同大会
    • Place of Presentation
      神戸
    • Related Report
      2008 Annual Research Report
  • [Presentation] 出芽酵母F-boxタンパク質Met30の機能解析2008

    • Author(s)
      三國恭平, 等
    • Organizer
      第31回日本分子生物学会年会・第81回日本生化学会大会合同大会
    • Place of Presentation
      神戸
    • Related Report
      2008 Annual Research Report
  • [Presentation] 出茅酵母F-box蛋白質Dia2と複製フォーク蛋白質との結合2007

    • Author(s)
      三村 覚 等
    • Organizer
      第30回日本分子生物学会年会.第80回日本生化学会大会.合同大会
    • Place of Presentation
      横浜
    • Related Report
      2007 Annual Research Report
  • [Presentation] 転写伸長因子Elongin AのRNA polymerase IIユビキチン化への関与2007

    • Author(s)
      安川 孝史 等
    • Organizer
      第30回日本分子生物学会年会.第80回日本生化学会大会.合同大会
    • Place of Presentation
      横浜
    • Related Report
      2007 Annual Research Report
  • [Presentation] 出茅酵母Cul8,MMS1,MMS22の複合体形成の解析2007

    • Author(s)
      石井 哲 等
    • Organizer
      第30回日本分子生物学会年会.第80回日本生化学会大会.合同大会
    • Place of Presentation
      横浜
    • Related Report
      2007 Annual Research Report
  • [Presentation] 細胞増殖抑制因子p27の新たな分解因子の分離精製及び解析2006

    • Author(s)
      嘉村巧、中山敬一
    • Organizer
      日本分子生物学会2006フォーラム
    • Place of Presentation
      名古屋(シンポジウム)
    • Year and Date
      2006-12-07
    • Related Report
      2010 Final Research Report
  • [Presentation] VHL-box and SOCS-box domains determine binding specificity for Cul2-Rbx1 and Cul5-Rbx2 modules of ubiquitinligases.2006

    • Author(s)
      Kamura T
    • Organizer
      The Fourth NIBB-EMBL Symposium Biology of Protein Conjugation, Structure and Function
    • Place of Presentation
      岡崎
    • Year and Date
      2006-12-04
    • Related Report
      2010 Final Research Report
  • [Presentation] ユビキチンシステムと発癌・細胞周期2006

    • Author(s)
      嘉村巧
    • Organizer
      第68回日本血液学会総会・第48回日本臨床血液学会総会・合同総会
    • Place of Presentation
      福岡(教育講演)
    • Year and Date
      2006-10-07
    • Related Report
      2010 Final Research Report
  • [Book] モノユビキチン化の解析 実験医学(別冊) タンパク質の翻訳後修飾解析プロトコール(稲垣昌樹編)2006

    • Author(s)
      嘉村巧
    • Publisher
      羊土社、東京
    • Related Report
      2010 Final Research Report
  • [Remarks] ホームページ

    • URL

      http://bunshi4.bio.nagoya-u.ac.jp/~2kamura/index.html6

    • Related Report
      2010 Final Research Report
  • [Remarks]

    • URL

      http://bunshi4.bio.nagoya-u.ac.jp/%7e2kamura/index.html

    • Related Report
      2010 Annual Research Report
  • [Remarks]

    • URL

      http://bunshi4.bio.nagoya-u.ac.jp/%7e2kamura/index.html

    • Related Report
      2009 Annual Research Report
  • [Remarks]

    • URL

      http://bunshi4.bio.nagoya-u.ac.jp/%7e2kamura/index.html

    • Related Report
      2008 Self-evaluation Report
  • [Remarks]

    • URL

      http://bunshi4.bio.nagoya-u.ac.jp/%7e2kamura/index.html

    • Related Report
      2008 Annual Research Report
  • [Remarks]

    • URL

      http://bunshi4.bio.nagoya-u.ac.jp/~2kamura/index.html

    • Related Report
      2007 Annual Research Report

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Published: 2006-04-01   Modified: 2018-03-28  

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