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Analyses of behavior incompatibility triggered by expression changes of pigmentation genes

Planned Research

Project AreaCorrelative gene system: establishing next-generation genetics
Project/Area Number 23113008
Research Category

Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)

Allocation TypeSingle-year Grants
Review Section Biological Sciences
Research InstitutionTokyo Metropolitan University (2012-2015)
National Institute of Genetics (2011)

Principal Investigator

Takahashi Aya  首都大学東京, 理工学研究科, 准教授 (90370121)

Co-Investigator(Kenkyū-buntansha) OSADA Naoki  北海道大学, 情報科学研究科, 准教授 (70416270)
Project Period (FY) 2011-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥99,190,000 (Direct Cost: ¥76,300,000、Indirect Cost: ¥22,890,000)
Fiscal Year 2015: ¥16,120,000 (Direct Cost: ¥12,400,000、Indirect Cost: ¥3,720,000)
Fiscal Year 2014: ¥16,120,000 (Direct Cost: ¥12,400,000、Indirect Cost: ¥3,720,000)
Fiscal Year 2013: ¥17,030,000 (Direct Cost: ¥13,100,000、Indirect Cost: ¥3,930,000)
Fiscal Year 2012: ¥16,900,000 (Direct Cost: ¥13,000,000、Indirect Cost: ¥3,900,000)
Fiscal Year 2011: ¥33,020,000 (Direct Cost: ¥25,400,000、Indirect Cost: ¥7,620,000)
Keywords体色変異 / 性行動 / ドーパミン代謝系 / 多面発現 / ショウジョウバエ / 種分化 / シス遺伝子発現制御 / トランス遺伝子発現制御 / ドーパミン / RNAseq / 生殖的隔離 / 次世代シークエンサー / ebony
Outline of Final Research Achievements

This study focused on dopamine biosynthesis pathway genes, which has a pleiotropic effect on both body pigmentation and behavior, as genes potentially involved in reproductive isolation triggered by environmental adaptation. We found unexpectedly complex cis-regulatory polymorphisms in these genes and a genetic variant that is likely to change both pigmentation and behavior.
From a wider viewpoint of the “Correlative gene systems”, another contribution of this study was to elucidate various associations between cis/trans-regulatory variations and genomic factors by conducting a novel type of genome-wide transcriptome analysis.

Report

(6 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Annual Research Report
  • 2013 Annual Research Report
  • 2012 Annual Research Report
  • 2011 Annual Research Report

Research Products

(112 results)

All 2016 2015 2014 2013 2012 2011 Other

All Int'l Joint Research (2 results) Journal Article (36 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 35 results,  Open Access: 11 results,  Acknowledgement Compliant: 3 results) Presentation (58 results) (of which Int'l Joint Research: 4 results,  Invited: 21 results) Book (8 results) Remarks (7 results) Funded Workshop (1 results)

  • [Int'l Joint Research] Universidade de Lisboa(ポルトガル)

    • Country Name
      PORTUGAL
    • Counterpart Institution
      Universidade de Lisboa
    • Related Report
      2015 Annual Research Report
  • [Int'l Joint Research] Chonnam National University(韓国)

    • Country Name
      KOREA (REP. OF KOREA)
    • Counterpart Institution
      Chonnam National University
    • Related Report
      2015 Annual Research Report
  • [Journal Article] Factors underlying natural variation in body pigmentation of Drosophila melanogaster.2016

    • Author(s)
      Sunaga S, Akiyama N, Miyagi R, Takahashi A
    • Journal Title

      Genes Genet. Syst.

      Volume: in press Pages: in press

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Whole genome sequencing reveals small genomic regions of introgression in an introduced crater lake population of threespine stickleback.2016

    • Author(s)
      Yoshida K, Miyagi R, Mori S, Takahashi A, Makino T, Toyoda A, Fujiyama A, Kitano J
    • Journal Title

      Ecol. Evol.

      Volume: 6 Pages: 2190-2204

    • DOI

      10.1002/ece3.2047

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Complex patterns of cis-regulatory polymorphisms in ebony underlie standing pigmentation variation in Drosophila melanogaster.2015

    • Author(s)
      Miyagi R, Akiyama N, Osada N, Takahashi A
    • Journal Title

      Mol. Ecol.

      Volume: 24 Pages: 5829-5841

    • DOI

      10.1111/mec.13432

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] An individual-based diploid model predicts limited conditions under which stochastic gene expression becomes advantageous.2015

    • Author(s)
      Matsumoto T, Mineta K, Osada N, Araki H
    • Journal Title

      Front. Genet.

      Volume: 6 Pages: 336

    • DOI

      10.3389/fgene.2015.00336

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Genetic diversity in humans and non-human primates and its evolutionary consequences.2015

    • Author(s)
      Osada N
    • Journal Title

      Genes & Genet. Syst.

      Volume: 90 Pages: 133-145

    • DOI

      10.1266/ggs.90.133

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Ecological genomics in Xanthomonas: the nature of genetic adaptation with homologous recombination and host shifts.2015

    • Author(s)
      Huang C-L, Pu P-H, Huang H-J, Sung H-M, Liaw H-J, Chen Y-M, Chen C-M, Huang M-B, Osada N, Gojobori T, Pai T-W, Chen Y-T, Hwang C-C,Chiang T-Y
    • Journal Title

      BMC Genomics

      Volume: 16 Pages: 188

    • DOI

      10.1186/s12864-015-1369-8

    • Related Report
      2015 Annual Research Report 2014 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Population genetics of non-genetic traits: evolutionary roles of stochasticity in gene expression.2015

    • Author(s)
      Mineta K, Matsumoto T, Osada N, Araki H
    • Journal Title

      Gene

      Volume: 562 Pages: 16-21

    • DOI

      10.1016/j.gene.2015.03.011

    • Related Report
      2015 Annual Research Report 2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Model-based verification of hypotheses on the origin of modern Japanese revisited by Bayesian inference based on genome-wide SNP data.2015

    • Author(s)
      Nakagome S, Sato T, Ishida H, Hanihara T, Yamaguchi T, Kimura R, Mano S, Oota H, The Asian DNA Repository Consortium
    • Journal Title

      Mol. Biol. Evol.

      Volume: 32 Pages: 1533-1543

    • DOI

      10.1093/molbev/msv045

    • Related Report
      2015 Annual Research Report 2014 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Whole-genome sequencing of six Mauritian cynomolgus macaques (Macaca fascicularis) reveals a genome-wide pattern of polymorphisms under extreme population bottleneck.2015

    • Author(s)
      Osada N, Hettiarachchi N, Babarinde I A, Saitou N, Blancher A
    • Journal Title

      Genome Biol. Evol.

      Volume: 7 Pages: 821-830

    • DOI

      10.1093/gbe/evv033

    • Related Report
      2015 Annual Research Report 2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] CYP2D44 polymorphisms in cynomolgus and rhesus macaques.2015

    • Author(s)
      Uno Y, Uehara S, Kohara S, Osada N, Murayama N, Yamazaki H
    • Journal Title

      Mol. Biol. Rep.

      Volume: 42 Pages: 1149-1155

    • DOI

      10.1007/s11033-015-3863-0

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] CYP2D44 polymorphisms in cynomolgus and rhesus macaques2015

    • Author(s)
      Uno Y, Uehara S, Kohara S, Osada N, Murayama N, Yamazaki H
    • Journal Title

      Mol. Biol. Rep.

      Volume: - Pages: -

    • DOI

      10.1007/s11033-015-3863-0

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A novel cell death gene acts to repair patterning defects in Drosophila melanogaster.2014

    • Author(s)
      Tanaka K M, Takahashi A, Fuse N, Takano-Shimizu-Kouno T
    • Journal Title

      Genetics

      Volume: 197 Pages: 739-742

    • DOI

      10.1534/genetics.114.163337

    • Related Report
      2014 Annual Research Report 2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Extracting population genetics information from a diploid genome sequence.2014

    • Author(s)
      Osada N
    • Journal Title

      Front. Ecol. Evol.

      Volume: 2 Pages: 7

    • DOI

      10.3389/fevo.2014.00007

    • Related Report
      2014 Annual Research Report 2013 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] The genome landscape of the African green monkey kidney-derived Vero cell line.2014

    • Author(s)
      Osada N, Kohara A, Yamaji T, Hirayama N, Kasai F, Sekizuka T, Kuroda M, Hanada K
    • Journal Title

      DNA Res.

      Volume: 21 Pages: 673-683

    • DOI

      10.1093/dnares/dsu029

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Dopamine receptor genes and evolutionary differentiation in the domestication of fighting cocks and long-crowing chickens.2014

    • Author(s)
      Komiyama T, Iwama H, Osada N, Nakamura Y, Kobayashi H, Tateno Y, Gojobori T
    • Journal Title

      PLOS ONE

      Volume: 9 Pages: e101778

    • DOI

      10.1371/journal.pone.0101778

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Whole genome sequencing of Tibetan macaque (Macaca thibetana) provides new insight into the macaque evolutionary history.2014

    • Author(s)
      Fan Z, Zhao G, Li P, Osada N, Xing J, Yi Y, Du L, Silva P, Wang H, Sakate R, Zhang X, Xu H, Yue B, Li J
    • Journal Title

      Mol. Biol. Evol.

      Volume: 31 Pages: 1475-1489

    • DOI

      10.1093/molbev/msu104

    • Related Report
      2014 Annual Research Report 2013 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Prdm9 polymorphism unveils mouse evolutionary tracks.2014

    • Author(s)
      Kono H, Tamura M, Osada N, Suzuki H, Abe K, Moriwaki K, Ohta K, Shiroishi T
    • Journal Title

      DNA Res.

      Volume: 21 Pages: 315-326

    • DOI

      10.1093/dnares/dst059

    • Related Report
      2014 Annual Research Report 2013 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Adaptive divergence with gene flow in incipient speciation of Miscanthus floridulus/sinensis complex (Poaceae).2014

    • Author(s)
      Huang C-L, Ho C-W, Chiang Y-C, Shigemoto Y, Hsu T-W, Hwang C-C, Ge X-J, Chen C, Wu T-H, Chou C-H, Huang H-J, Gojobori T, Osada N, Chiang T-Y
    • Journal Title

      Plant J.

      Volume: 80 Pages: 834-847

    • DOI

      10.1111/tpj.12676

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Pigmentation and behavior: potential association through pleiotropic genes in Drosophila.2013

    • Author(s)
      Takahashi A.
    • Journal Title

      Genes Genet. Syst.

      Volume: 88 Pages: 165-174

    • DOI

      10.1266/ggs.88.165

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Cold tolerance and metabolic rate increased by cold acclimation in Drosophila albomicans from natural populations.2013

    • Author(s)
      Isobe K., Takahashi A., Tamura K.
    • Journal Title

      Genes Genet. Syst.

      Volume: 88 Pages: 289-300.

    • DOI

      10.1266/ggs.88.289

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Finding the factors of reduced genetic diversity on X chromosomes of Macaca fascicularis: male-driven evolution, demography, and natural selection.2013

    • Author(s)
      Osada N., Nakagome S., Mano S., Kameoka Y., Takahashi I., Terao K.
    • Journal Title

      Genetics

      Volume: 195 Pages: 1027-1035

    • DOI

      10.1534/genetics.113.156703

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 有害な変異と偶然の効果―中立説とほぼ中立説2013

    • Author(s)
      長田直樹
    • Journal Title

      生物の科学・遺伝

      Volume: 5月号 Pages: 322-326

    • Related Report
      2013 Annual Research Report
  • [Journal Article] Systematic classification of vertebrate chemokines based on conserved synteny and evolutionary history.2013

    • Author(s)
      Nomiyama, H.
    • Journal Title

      Genes Cells

      Volume: 18 Pages: 1-16

    • DOI

      10.1111/gtc.12013

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Cuticular hydrocarbon content that affects male mate preference of Drosophila melanogaster from West Africa.2012

    • Author(s)
      Takahashi, A.
    • Journal Title

      Int. J. Evol. Biol.

      Volume: 2012 Pages: 278903

    • DOI

      10.1155/2012/278903

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Starvation-induced elevation of taste responsiveness and expression of a sugar taste receptor gene in Drosophila melanogaster.2012

    • Author(s)
      Nishimura, A.
    • Journal Title

      J. Neurogenet.

      Volume: 26 Pages: 206-215

    • DOI

      10.3109/01677063.2012.694931

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Weak selection and protein evolution.2012

    • Author(s)
      Akashi, H.
    • Journal Title

      Genetics

      Volume: 192 Pages: 15-31

    • DOI

      10.1534/genetics.112.140178

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Whole-genome sequencing and analysis of the Malaysian cynomolgus macaque (Macaca fascicularis) genome.2012

    • Author(s)
      Higashino, A.
    • Journal Title

      Genome Biol.

      Volume: 13 Pages: R58

    • DOI

      10.1186/gb-2012-13-7-r58

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Evolutionary rates of commonly used nuclear and organelle markers of Arabidopsis relatives (Brassicaceae).2012

    • Author(s)
      Huang, C.-C.
    • Journal Title

      Gene

      Volume: 499 Pages: 194-201

    • DOI

      10.1016/j.gene.2012.02.037

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Footprints of natural and artificial selection for photoperiod pathway genes in Oryza.2012

    • Author(s)
      Huang, C.-L.
    • Journal Title

      Plant J.

      Volume: 70 Pages: 769-782

    • DOI

      10.1111/j.1365-313X.2012.04915.x

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Cuticular hydrocarbon content that affects male mate preference of Drosophila melanogaster from West Africa2012

    • Author(s)
      Takahashi, A., et al
    • Journal Title

      Int.J.Evol.Biol.

      Volume: 2012 Pages: 278903

    • DOI

      10.1155/2012/278903

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Evolutionary rates of commonly used nuclear and organelle markers of Arabidopsis relatives (Brassicaceae)2012

    • Author(s)
      Huan C.-C., et al
    • Journal Title

      Gene

      Volume: 499 Pages: 194-201

    • DOI

      10.1016/j.gene.2012.02.037

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Footprints of natural and artificial selection for photoperiod pathway genes in Oryza2012

    • Author(s)
      Huang, C.-L., et al
    • Journal Title

      Plant J.

      Volume: (in press)

    • DOI

      10.1111/j.1365-313X.2012.04915.x

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Divergent enhancer haplotype of ebony on inversion In(3R)Payne associated with pigmentation variation in a tropical population of Drosophila melanogaster2011

    • Author(s)
      Takahashi, A., Takano-Shimizu, T.
    • Journal Title

      Mol.Ecol.

      Volume: 20 Pages: 4277-87

    • DOI

      10.1111/j.1365-294X.2011.05260.x

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Mitochondrial-nuclear interactions and accelerated compensatory evolution : Evidence from the primate cytochrome c oxidase complex2011

    • Author(s)
      Osada, N., Akashi, H.
    • Journal Title

      Mol.Biol.Evol.

      Volume: 29 Pages: 337-346

    • DOI

      10.1093/molbev/msr211

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] CpG site degeneration triggered by the loss of functional constraint created a highly polymorphic macaque drug-metabolizing gene, CYP1A22011

    • Author(s)
      Uno, Y., Osada, N.
    • Journal Title

      BMC Evol.Biol.

      Volume: 11 Pages: 283

    • DOI

      10.1186/1471-2148-11-283

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Phylogenetic inconsistency caused by ancient sex-biased migration2011

    • Author(s)
      Osada, N.
    • Journal Title

      PloS ONE

      Volume: 6 Pages: e25549

    • DOI

      10.1371/journal.pone.0025549

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Presentation] 種分化と適応の遺伝学: モデル生物の利点2016

    • Author(s)
      高橋文
    • Organizer
      日本生態学会第63回大会
    • Place of Presentation
      仙台
    • Year and Date
      2016-03-21
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] Genetic architecture of gene expression variation in fruit flies.2015

    • Author(s)
      長田直樹
    • Organizer
      日独先端科学シンポジウム
    • Place of Presentation
      京都
    • Year and Date
      2015-10-02 – 2015-10-04
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] キイロショウジョウバエ種内体色変異の適応的意義と関与する分子機構の解明2015

    • Author(s)
      秋山礼良、宮城竜太郎、高橋文
    • Organizer
      日本遺伝学会第87回大会
    • Place of Presentation
      仙台
    • Year and Date
      2015-09-24 – 2015-09-26
    • Related Report
      2015 Annual Research Report
  • [Presentation] ショウジョウバエ自然集団における体色多型を生み出すメラニン合成遺伝子群のcis発現量解2015

    • Author(s)
      宮城竜太郎、秋山礼良、長田直樹、高橋文
    • Organizer
      日本進化学会第17回東京大会
    • Place of Presentation
      東京
    • Year and Date
      2015-08-20 – 2015-08-23
    • Related Report
      2015 Annual Research Report
  • [Presentation] キイロショウジョウバエ種内体色変異の適応的意義と関与する分子機構の解明2015

    • Author(s)
      秋山礼良、宮城竜太郎、高橋文
    • Organizer
      日本進化学会第17回東京大会
    • Place of Presentation
      東京
    • Year and Date
      2015-08-20 – 2015-08-23
    • Related Report
      2015 Annual Research Report
  • [Presentation] Nucleotide polymorphism and physiological diversity underlying pigmentation variation in Drosophila melanogaster.2015

    • Author(s)
      Aya Takahashi
    • Organizer
      2015 Meeting of the European Society of Evolutionary Biology
    • Place of Presentation
      Lausanne, Switzerland
    • Year and Date
      2015-08-10 – 2015-08-14
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] モーリシャス島産カニクイザルの全ゲノムシークエンス解析2015

    • Author(s)
      長田直樹、Hettiarachchi Nilmini、Babarinde Isaac Adeyemi、斎藤成也、Blancher Antoine
    • Organizer
      第31回日本霊長類学会大会
    • Place of Presentation
      京都
    • Year and Date
      2015-07-18 – 2015-07-21
    • Related Report
      2015 Annual Research Report
  • [Presentation] ボトルネックがゲノムに与える現象の解析:モーリシャス産カニクイザルを例に2015

    • Author(s)
      長田直樹
    • Organizer
      遺伝研研究集会「ビッグデータ時代の分子進化」
    • Place of Presentation
      三島
    • Year and Date
      2015-06-27 – 2015-06-28
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] Quantification of cis-regulatory variation in Drosophila melanogaster.2015

    • Author(s)
      Naoki Osada, Ryutaro Miyagi, Aya Takahashi
    • Organizer
      International Symposium: "Establishing Next-Generation Genetics"
    • Place of Presentation
      Nara
    • Year and Date
      2015-05-28 – 2015-05-29
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Complex cis-regulatory polymorphisms in ebony and tan underlying standing pigmentation variation in Drosophila melanogaster.2015

    • Author(s)
      Ryutaro Miyagi, Naoki Osada, Aya Takahashi
    • Organizer
      International Symposium: "Establishing Next-Generation Genetics"
    • Place of Presentation
      Nara
    • Year and Date
      2015-05-28 – 2015-05-29
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Pleiotropic effect and conflict resolution in cis-regulatory mutations elucidated by genome-wide allelic gene rxpression profiles from a natural population of Drosophila melanogaster.2014

    • Author(s)
      Takahashi A.
    • Organizer
      SMBE Satellite Meeting/NIG International Symposium
    • Place of Presentation
      三島
    • Year and Date
      20140317-20140319
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] 進化遺伝学研究に熱意をそそぎ続けるために2014

    • Author(s)
      高橋文
    • Organizer
      生命情報科学若手の会第5回研究会
    • Place of Presentation
      千葉
    • Year and Date
      20140217-20140219
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] 集団遺伝学データ解析:ABCのABC2014

    • Author(s)
      長田直樹
    • Organizer
      ゲノム多様性データの統計解析ワークショップ
    • Place of Presentation
      福岡
    • Year and Date
      2014-12-05
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Evolution of transcription regulation of genes in an insect model organism.2014

    • Author(s)
      Aya Takahashi
    • Organizer
      14th Japanese-American Frontiers of Science Symposium
    • Place of Presentation
      東京
    • Year and Date
      2014-12-04 – 2014-12-07
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Challenge of population genomics in non-model organisms2014

    • Author(s)
      Naoki Osada
    • Organizer
      Frontiers in Genomic Research, National Chen-Kung University
    • Place of Presentation
      Tainan, Taiwan
    • Year and Date
      2014-12-02
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] 遺伝子発現調節領域の集団内変異2014

    • Author(s)
      高橋文
    • Organizer
      木村資生博士生誕90周年記念シンポジウム
    • Place of Presentation
      三島
    • Year and Date
      2014-11-14
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] 木村先生の研究に関連した、私の二つの研究トピック: 優性度による選択圧の違いと補完的進化2014

    • Author(s)
      長田直樹
    • Organizer
      木村資生博士生誕90周年記念シンポジウム
    • Place of Presentation
      三島
    • Year and Date
      2014-11-14
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] キイロショウジョウバエにおける体色変異と低温,乾燥耐性2014

    • Author(s)
      秋山礼良,宮城竜太郎,高橋文
    • Organizer
      日本遺伝学会第86回大会
    • Place of Presentation
      長浜
    • Year and Date
      2014-09-19
    • Related Report
      2014 Annual Research Report
  • [Presentation] ショウジョウバエ自然集団における体色多型を生み出すメラニン合成遺伝子群のcis発現量解析2014

    • Author(s)
      宮城竜太郎,長田直樹,高橋文
    • Organizer
      日本遺伝学会第86回大会
    • Place of Presentation
      長浜
    • Year and Date
      2014-09-18
    • Related Report
      2014 Annual Research Report
  • [Presentation] ショウジョウバエ自然集団における体色多型を生み出すメラニン合成遺伝子群のcis発現量解析2014

    • Author(s)
      宮城竜太郎,長田直樹,高橋文
    • Organizer
      日本進化学会第16回大阪大会
    • Place of Presentation
      高槻
    • Year and Date
      2014-08-22
    • Related Report
      2014 Annual Research Report
  • [Presentation] キイロショウジョウバエにおける体色変異と低温,乾燥耐性2014

    • Author(s)
      秋山礼良,宮城竜太郎,高橋文
    • Organizer
      日本進化学会第16回大阪大会
    • Place of Presentation
      高槻
    • Year and Date
      2014-08-22
    • Related Report
      2014 Annual Research Report
  • [Presentation] 帰無モデルとしての中立説と歴史推定2013

    • Author(s)
      長田直樹
    • Organizer
      統計数理研究所研究集会 ゲノム多様性のデータ解析
    • Place of Presentation
      東京
    • Year and Date
      20131219-20131220
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] 霊長類のゲノム進化2013

    • Author(s)
      長田直樹
    • Organizer
      日本人類学会
    • Place of Presentation
      つくば
    • Year and Date
      20131101-20131104
    • Related Report
      2013 Annual Research Report
  • [Presentation] ショウジョウバエ自然集団内アレルサンプルにおけるドーパミン合成遺伝子群の発現解析2013

    • Author(s)
      宮城竜太郎, 長田直樹, 高橋文
    • Organizer
      日本遺伝学会第85回大会
    • Place of Presentation
      横浜
    • Year and Date
      20130919-20130921
    • Related Report
      2013 Annual Research Report
  • [Presentation] キイロショウジョウバエにおける集団内でのcisおよびtrans遺伝子発現変異の定量2013

    • Author(s)
      長田直樹, 宮城竜太郎, 高橋文
    • Organizer
      日本遺伝学会第85回大会
    • Place of Presentation
      横浜
    • Year and Date
      20130919-20130921
    • Related Report
      2013 Annual Research Report
  • [Presentation] Expression variation analyses of the dopamine biosynthesis pathway genes within Drosophila melanogaster population using Fluidigm 48.48 Access Array system.2013

    • Author(s)
      Miyagi R., Osada N., Takahashi A.
    • Organizer
      SMBE 2013
    • Place of Presentation
      シカゴ
    • Year and Date
      20130707-20130711
    • Related Report
      2013 Annual Research Report
  • [Presentation] Genome-wide expression analyses using allelic samples from a natural population of Drosophila.2013

    • Author(s)
      Takahashi A.
    • Organizer
      Evolution of Junk DNAs
    • Place of Presentation
      三島
    • Year and Date
      20130622-20130623
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Genome-wide expression analyses using allelic samples from Drosophila Genomic Resource Panel constructed from a natural population of Drosophila melanogaster.2013

    • Author(s)
      Takahashi A.
    • Organizer
      The 2nd Asia-Pacific Drosophila Research Conference.
    • Place of Presentation
      ソウル
    • Year and Date
      20130513-20130516
    • Related Report
      2013 Annual Research Report
  • [Presentation] Access Array System及び 454 GS junior を利用したショウジョウバエ自然集団内アレルサンプルの遺伝子発現解析2013

    • Author(s)
      宮城竜太郎
    • Organizer
      生命情報科学若手の会第4回研究会
    • Place of Presentation
      岡崎
    • Year and Date
      2013-03-01 – 2013-03-03
    • Related Report
      2012 Annual Research Report
  • [Presentation] Evolution of rice photoperiod genes2013

    • Author(s)
      Osada, N.
    • Organizer
      NIG collaborative research meeting: Evolutionary Genetics and Proteomics of Natural Resources in Asia
    • Place of Presentation
      三島
    • Year and Date
      2013-02-04
    • Related Report
      2012 Annual Research Report
  • [Presentation] Ecological and Evolutionary Genomics of non-model organisms in Asia2012

    • Author(s)
      Osada, N.
    • Organizer
      CKJ meeting: Genomics, Proteomics, and Bioinformatics with the Asian Perspective
    • Place of Presentation
      三島
    • Year and Date
      2012-12-11
    • Related Report
      2012 Annual Research Report
  • [Presentation] 実験用霊長類のゲノムとその多様性2012

    • Author(s)
      長田直樹
    • Organizer
      第8回霊長類医科学研究フォーラム
    • Place of Presentation
      つくば
    • Year and Date
      2012-11-29
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] 霊長類でのX染色体と常染色体との遺伝的多様性の比について2012

    • Author(s)
      長田直樹
    • Organizer
      第66回日本人類学会
    • Place of Presentation
      横浜
    • Year and Date
      2012-11-02 – 2012-11-04
    • Related Report
      2012 Annual Research Report
  • [Presentation] ゲノムの分岐パターンから探る-歴史,種分化,適応2012

    • Author(s)
      長田直樹
    • Organizer
      みちのく進化生物セミナー
    • Place of Presentation
      仙台
    • Year and Date
      2012-10-19
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] ショウジョウバエの進化遺伝学研究2012

    • Author(s)
      高橋文
    • Organizer
      第84回日本遺伝学会大会
    • Place of Presentation
      福岡
    • Year and Date
      2012-09-24 – 2012-09-26
    • Related Report
      2012 Annual Research Report
  • [Presentation] ショウジョウバエ自然集団内アレルサンプルを用いたゲノムワイドな遺伝子発現解析2012

    • Author(s)
      高橋文
    • Organizer
      第84回日本遺伝学会大会
    • Place of Presentation
      福岡
    • Year and Date
      2012-09-24 – 2012-09-26
    • Related Report
      2012 Annual Research Report
  • [Presentation] Inference of population history from genomic data.2012

    • Author(s)
      Osada, N.
    • Organizer
      First Arabidopsis Symposium
    • Place of Presentation
      Tainan, Taiwan
    • Year and Date
      2012-09-24 – 2012-09-25
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] ゲノム情報を用いた集団の歴史の推定:霊長類や植物の例2012

    • Author(s)
      長田直樹
    • Organizer
      統計数理研究所研究集会:生物集団に関する遺伝データと集団遺伝学
    • Place of Presentation
      立川
    • Year and Date
      2012-08-30 – 2012-08-31
    • Related Report
      2012 Annual Research Report
  • [Presentation] ショウジョウバエ自然集団内アレルサンプルを用いた遺伝子発現解析2012

    • Author(s)
      高橋文
    • Organizer
      日本進化学会第14回大会
    • Place of Presentation
      八王子
    • Year and Date
      2012-08-21 – 2012-08-24
    • Related Report
      2012 Annual Research Report
  • [Presentation] Inferring natural selection by stratifying a single genome sequence.2012

    • Author(s)
      Osada, N.
    • Organizer
      SMBE2012
    • Place of Presentation
      Dublin, Ireland
    • Year and Date
      2012-06-23 – 2012-06-26
    • Related Report
      2012 Annual Research Report
  • [Presentation] Association between Color and Behavior due to Expression Variants of a Pleiotropic Gene, ebony, in Drosophila2012

    • Author(s)
      Takahashi, A.
    • Organizer
      The 8^<th> Okazaki Biological Conference
    • Place of Presentation
      基礎生物学研究所(岡崎市)(招待講演)
    • Year and Date
      2012-03-21
    • Related Report
      2011 Annual Research Report
  • [Presentation] Compensatory Evolution between Mitochondrial and Nuclear Genomes2012

    • Author(s)
      Osada, N.
    • Organizer
      The 8^<th> Okazaki Biological Conference
    • Place of Presentation
      基礎生物学研究所(岡崎市)(招待講演)
    • Year and Date
      2012-03-20
    • Related Report
      2011 Annual Research Report
  • [Presentation] 多座位データを用いたゲノムヒストリーの推定2011

    • Author(s)
      長田直樹
    • Organizer
      統計数理研究所共同利用研究集会
    • Place of Presentation
      統計数理研究所(立川市)
    • Year and Date
      2011-12-19
    • Related Report
      2011 Annual Research Report
  • [Presentation] Inference of population history using a single genome data2011

    • Author(s)
      Osada, N.
    • Organizer
      日本分子生物学会,第34回大会
    • Place of Presentation
      パシフィコ横浜(横浜市)
    • Year and Date
      2011-12-14
    • Related Report
      2011 Annual Research Report
  • [Presentation] Genetic diversity and population history of macaque monkeys2011

    • Author(s)
      Osada, N.
    • Organizer
      Genomic Conservation and Diversity of Organisms : Beyond the NGS time of Life Science
    • Place of Presentation
      Tainan, Taiwan
    • Year and Date
      2011-12-09
    • Related Report
      2011 Annual Research Report
  • [Presentation] メタゲノム解析とその応用2011

    • Author(s)
      長田直樹
    • Organizer
      メタゲノム解析を利用した下水道情報網基盤構築に関する研究集会
    • Place of Presentation
      諏訪市
    • Year and Date
      2011-11-27
    • Related Report
      2011 Annual Research Report
  • [Presentation] 機能喪失とCpGサイトの崩壊による旧世界ザルCYP1A2遺伝子の高い遺伝的多様性2011

    • Author(s)
      長田直樹, 宇野泰広
    • Organizer
      日本遺伝学会,第83回大会
    • Place of Presentation
      京都大学(京都市)
    • Year and Date
      2011-09-22
    • Related Report
      2011 Annual Research Report
  • [Presentation] ショウジョウバエ脳におけるebony発現量変異と性行動の日周活動性について2011

    • Author(s)
      高橋文
    • Organizer
      日本遺伝学会,第83回大会
    • Place of Presentation
      京都大学(京都市)
    • Year and Date
      2011-09-20
    • Related Report
      2011 Annual Research Report
  • [Presentation] Association between Color and Behavior in Drosophila2011

    • Author(s)
      Takahashi, A.
    • Organizer
      SMBE2011
    • Place of Presentation
      京都大学(京都市)(招待講演)
    • Year and Date
      2011-07-27
    • Related Report
      2011 Annual Research Report
  • [Presentation] Compensatory evolution between mitochondrial and nuclear genomes : evidence from primate respiratory chain complex genes2011

    • Author(s)
      Osada, N., Akashi, H.
    • Organizer
      SMBE2011
    • Place of Presentation
      京都大学(京都市)
    • Year and Date
      2011-07-27
    • Related Report
      2011 Annual Research Report
  • [Presentation] 霊長類の中のヒト:ゲノム多様性の種間比較2011

    • Author(s)
      長田直樹
    • Organizer
      遺伝研共同研究集会:ヒト形質のゲノム発掘による新しい進化人類学の創成
    • Place of Presentation
      国立遺伝学研究所(三島市)
    • Year and Date
      2011-07-01
    • Related Report
      2011 Annual Research Report
  • [Presentation] ヒトゲノムの進化における自然選択と遺伝的浮動の役割

    • Author(s)
      長田直樹
    • Organizer
      インシリコ・メガバンク研究会
    • Place of Presentation
      仙台
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Finding evidence for weak compensatory evolution.

    • Author(s)
      Osada N.
    • Organizer
      Evolution of Junk DNAs
    • Place of Presentation
      三島
    • Related Report
      2013 Annual Research Report
  • [Presentation] Dissecting regulatory mechanisms of transcriptome variation in Drosophila melanogaster.

    • Author(s)
      Osada N.
    • Organizer
      TIGP retreat
    • Place of Presentation
      Taipei, Taiwan
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Dissecting regulatory mechanisms of transcriptome variation in Drosophila melanogaster.

    • Author(s)
      Osada N.
    • Organizer
      ISEGB2013
    • Place of Presentation
      Taichung, Taiwan
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Finding evidence for weak compensatory evolution

    • Author(s)
      Osada N.,Akashi H.
    • Organizer
      SMBE Satellite Meeting/NIG International Workshop
    • Place of Presentation
      三島
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Genome-wide analysis of cis-regulatory mutations affecting gene expression in males and females of Drosophila melanogaster:

    • Author(s)
      Takahashi A.
    • Organizer
      RCGB conference: Prospect of Genomics and Bioinformatics
    • Place of Presentation
      東京
    • Related Report
      2013 Annual Research Report
  • [Presentation] Allele-specific gene expression among Drosophila melanogaster hybrid lines revealed abundant cis-regulatory mutations.

    • Author(s)
      長田直樹
    • Organizer
      ゲノム進化分野におけるビッグデータ情報解析の新展開
    • Place of Presentation
      東京
    • Related Report
      2013 Annual Research Report
  • [Book] 『遺伝子が語る生命38億年の謎-なぜ,ゾウはネズミより長生きか?』第7章「遺伝子多型の謎-ABO式血液型はなぜ生き残ったのか?」2014

    • Author(s)
      高橋文
    • Total Pages
      227(pp.70-79)
    • Publisher
      悠書館
    • Related Report
      2014 Annual Research Report
  • [Book] 遺伝子図鑑 「遺伝子図鑑」編集委員会編 第七章3節2013

    • Author(s)
      高橋文
    • Total Pages
      pp.142-143
    • Publisher
      悠書館
    • Related Report
      2013 Annual Research Report
  • [Book] 遺伝子図鑑 「遺伝子図鑑」編集委員会編 第七章1,2,11節2013

    • Author(s)
      明石裕,長田直樹
    • Total Pages
      pp.138-141, pp.158-159
    • Publisher
      悠書館
    • Related Report
      2013 Annual Research Report
  • [Book] ヒトは病気とともに進化した 太田博樹・長谷川眞理子編著 第二章2013

    • Author(s)
      長田直樹
    • Total Pages
      pp.21-65
    • Publisher
      勁草書房
    • Related Report
      2013 Annual Research Report
  • [Book] 「生殖隔離と種分化遺伝子」 In 『シリーズ現代の生態学7 エコゲノムクスー遺伝子からみた適応ー』(森長真一、工藤洋編集2012

    • Author(s)
      高橋文
    • Total Pages
      pp231-245
    • Publisher
      共立出版
    • Related Report
      2012 Annual Research Report
  • [Book] An overview of transcriptome studies in nonhuman primates. In: Post genome Biology of primates (Primatology monographs). Go, Y., Imai, H., Hirai, H. Eds.2012

    • Author(s)
      Osada, N.
    • Total Pages
      pp9-22
    • Publisher
      Springer-Verlag
    • Related Report
      2012 Annual Research Report
  • [Book] An overview of transcriptome studies in nonhuman primates. In : Post genome Biology of primates (Primatology monographs)2012

    • Author(s)
      Osada N.
    • Total Pages
      9-22
    • Publisher
      Springer-Verlag
    • Related Report
      2011 Annual Research Report
  • [Book] Bucentaur (Bent) Gene Family : Gene Duplication and Retrotransposon Insertion In Gene Duplication2011

    • Author(s)
      Iwashita, S., Osada, N.
    • Total Pages
      383-400
    • Publisher
      InTech
    • Related Report
      2011 Annual Research Report
  • [Remarks] 首都大学東京 進化遺伝学研究室

    • URL

      http://www.biol.se.tmu.ac.jp/labo.asp?ID=evogen

    • Related Report
      2015 Annual Research Report 2014 Annual Research Report
  • [Remarks] 新学術研究領域「ゲノム・遺伝子相関」

    • URL

      http://www.ige.tohoku.ac.jp/prg/genetics/

    • Related Report
      2015 Annual Research Report 2014 Annual Research Report
  • [Remarks] 新学術研究領域「ゲノム・遺伝子相関」高橋班研究内容

    • URL

      http://www.ige.tohoku.ac.jp/prg/genetics/study07.html

    • Related Report
      2013 Annual Research Report
  • [Remarks] 首都大学東京 理工学研究科 生命科学専攻 進化遺伝学研究室

    • URL

      http://www.biol.se.tmu.ac.jp/labo.asp?ID=evogen

    • Related Report
      2013 Annual Research Report
  • [Remarks] 新学術研究領域「ゲノム・遺伝子相関」高橋班研究内容

    • URL

      http://www.ige.tohoku.ac.jp/prg/genetics/study07.html

    • Related Report
      2012 Annual Research Report
  • [Remarks] 首都大学東京 理工学研究科 生命科学専攻 進化遺伝学研究室

    • URL

      http://www.biol.se.tmu.ac.jp/labo.asp?ID=evogen

    • Related Report
      2012 Annual Research Report
  • [Remarks]

    • URL

      http://www.ige.tohoku.ac.jp/prg/genetics/study07.html

    • Related Report
      2011 Annual Research Report
  • [Funded Workshop] International Symposium: "Establishing Next-Generation Genetics"2015

    • Place of Presentation
      Nara
    • Year and Date
      2015-05-28 – 2015-05-29
    • Related Report
      2015 Annual Research Report

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Published: 2011-08-01   Modified: 2019-07-29  

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