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Development of a method for simultaneous recordings of single channel dynamics and currents

Research Project

Project/Area Number 18H02596
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Review Section Basic Section 48020:Physiology-related
Research InstitutionUniversity of Fukui

Principal Investigator

Shimizu Hirofumi  福井大学, 学術研究院医学系部門, 講師 (50324158)

Co-Investigator(Kenkyū-buntansha) 岩本 真幸  福井大学, 学術研究院医学系部門, 教授 (40452122)
平井 義和  京都大学, 工学研究科, 助教 (40452271)
Project Period (FY) 2018-04-01 – 2021-03-31
Project Status Completed (Fiscal Year 2020)
Budget Amount *help
¥18,070,000 (Direct Cost: ¥13,900,000、Indirect Cost: ¥4,170,000)
Fiscal Year 2020: ¥2,340,000 (Direct Cost: ¥1,800,000、Indirect Cost: ¥540,000)
Fiscal Year 2019: ¥2,340,000 (Direct Cost: ¥1,800,000、Indirect Cost: ¥540,000)
Fiscal Year 2018: ¥13,390,000 (Direct Cost: ¥10,300,000、Indirect Cost: ¥3,090,000)
Keywords1分子計測 / 蛋白質 / X線回折 / X線回折
Outline of Final Research Achievements

In order to clarify the whole picture of the structure change in the ion channel, we aimed to develop a method for simultaneously measuring single-molecule current and single-molecule structure change. In this study, we developed a process for forming a hole by using a new material that can be patterned for forming a lipid bilayer in the device. A lipid bilayer membrane was formed and the capacitance was measured. And we have developed a process to reduce the electric capacity. Next, an electrode patterning process was performed to place the electrodes on the device. Then irradiation experiments were conducted to measure the electrical noise level associated with irradiation and to examine the method of shielding scattered X-rays. Furthermore, the size control method for probe has been improved to increase the efficiency of complex formation with proteins.

Academic Significance and Societal Importance of the Research Achievements

イオンチャネル蛋白質は1分子機能測定法である1分子電流計測法が確立しており、立体構造情報の蓄積が進んでいる今、1分子動態計測との同時計測の実現は、蛋白質の機能発現機構の解明に極めて重要である。本研究では、X線1分子動態計測法に適合する同時計測チャンバ開発を進めた。観測窓、流路形成素材の決定を始め、観測チャンバに電極を設置し、放射光実験で電極に散乱X線が入射することを防ぐノイズ対策など、同時計測実現へ向けた重要な進展があった。また、観測プローブと蛋白質の複合体形成効率を高めるため、サイズ制御法のプロセスの改良も進んだ。

Report

(4 results)
  • 2020 Annual Research Report   Final Research Report ( PDF )
  • 2019 Annual Research Report
  • 2018 Annual Research Report
  • Research Products

    (19 results)

All 2020 2019 2018 Other

All Journal Article (3 results) (of which Peer Reviewed: 3 results,  Open Access: 3 results) Presentation (15 results) (of which Int'l Joint Research: 7 results,  Invited: 2 results) Remarks (1 results)

  • [Journal Article] Diffracted X-ray tracking method for recording single-molecule protein motions2019

    • Author(s)
      Shimizu Hirofumi
    • Journal Title

      Biochimica et Biophysica Acta (BBA) - General Subjects

      Volume: in press Issue: 2 Pages: 129361-129361

    • DOI

      10.1016/j.bbagen.2019.05.004

    • Related Report
      2019 Annual Research Report 2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Hexameric and pentameric complexes of the ExbBD energizer in the Ton system2018

    • Author(s)
      Maki-Yonekura Saori、Matsuoka Rei、Yamashita Yoshiki、Shimizu Hirofumi、Tanaka Maiko、Iwabuki Fumie、Yonekura Koji
    • Journal Title

      eLife

      Volume: 7 Pages: 1-24

    • DOI

      10.7554/elife.35419

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] PB-07Structural Analysis of KcsA by Cryo-EM Single Particle Analysis2018

    • Author(s)
      Takazaki Hiroko、Shimizu Hirofumi、Yasunaga Takuo
    • Journal Title

      Microscopy

      Volume: 67 Issue: suppl_2 Pages: i35-i35

    • DOI

      10.1093/jmicro/dfy096

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Presentation] イオンチャネル構造遷移過程のX線1分子動画計測2020

    • Author(s)
      清水啓史
    • Organizer
      生理研研究会「イオンチャネルと生体膜のダイナミクス:構造生物学の先にあるもの」
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] X線1分子動態計測法の開発2020

    • Author(s)
      清水啓史
    • Organizer
      第67回中部生理学会
    • Related Report
      2020 Annual Research Report
  • [Presentation] SINGLE-MOLECULE TWISTING MOTIONS DURING GATING OF THE HUMAN TRPV1 CHANNEL RECORDED WITH SUB-MILLISECOND TIME RESOLUTION.2020

    • Author(s)
      Hirofumi Shimizu, Takuya Kobayashi, Masayuki Iwamoto, Kentaro Kajiwara, Nagomi Kurebayashi, Haruo Ogawa, Takashi Murayama.
    • Organizer
      64th Annual Meeting of Biophysical Society
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] “Microfabricated Observation Chamber for Diffracted X-ray Tracking Method to Capture Ion-Channel Gating Motion at Time-Lapse Images”,2019

    • Author(s)
      Yoshikazu Hirai
    • Organizer
      The 13th IEEE International Conference on Nano/Molecular Medicine and Engineering (IEEE-NANOMED 2019)
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Structural Analysis of KcsA by Cryo-EM Single Particle Analysis.2019

    • Author(s)
      Hiroko Takasaki, Hirofumi Shimizu, Takuo Yasunaga
    • Organizer
      The 57th Annual Meeting of the Biophysical Society of Japan
    • Related Report
      2019 Annual Research Report
  • [Presentation] Structural analysis of KcsA potassium channel by Cryo-EM.2019

    • Author(s)
      Hiroko Takazaki, Hirofumi Shimizu, Takuo Yasunaga.
    • Organizer
      日本顕微鏡学会生体解析分科会 Frontiers in Cellular, Viral and Molecular Microscopy with Cryo-specimen Preparation Techniques
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 「クライオ電子顕微鏡単粒子解析法を用いたKcsAの構造解析.」2019

    • Author(s)
      髙﨑寛子, 清水啓史, 安永卓生.
    • Organizer
      第61回日本顕微鏡学会九州支部集合・学術講演会
    • Related Report
      2019 Annual Research Report
  • [Presentation] “シリコン窒化膜を用いたX線一分子動態計測用溶液チャンバの開発”2019

    • Author(s)
      山内一慶, 田渕友樹, 平井義和, 岩本真幸, 土屋智由, 清水啓史, 田畑修,
    • Organizer
      第80回 応用物理学会
    • Related Report
      2019 Annual Research Report
  • [Presentation] 「X 線1 分子動態計測法に適する新たなターゲット分子の探索」2019

    • Author(s)
      清水啓史
    • Organizer
      第4回イオンチャネル研究会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Microfabricated Solution Chamber for High Resolution Diffracted X-ray Tracking Method to Observe Ion Channel Gating Motion2019

    • Author(s)
      Ikkei Yamauchi, Tomoki Tabuchi, Yoshikazu Hirai, Masayuki Iwamoto, Toshiyuki Tsuchiya, Hirofumi Shimizu, and Osamu Tabata
    • Organizer
      Transducers 2019
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 「イオンチャネルの開閉機構観察のための高解像度X 線一分子動態計測用溶液チャンバの開発」2019

    • Author(s)
      山内一慶,田渕友樹,平井義和,岩本真幸,土屋智由,清水啓史,田畑修
    • Organizer
      CHEMINAS39
    • Related Report
      2019 Annual Research Report
  • [Presentation] Method to Record Single-Molecule Fluctuations and Conformational Changes in Proteins2019

    • Author(s)
      Hirofumi Shimizu, Masayuki Iwamoto, Kentaro Kajiwara, Yoshikazu Hirai, Osamu Tabata
    • Organizer
      9th FAOPS CONGRESS
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] MICROFABRICATED SOLUTION CHAMBER FOR HIGH RESOLUTION DIFFRACTED X-RAY TRACKING METHOD TO OBSERVE ION-CHANNEL GATING MOTION2019

    • Author(s)
      Ikkei Yamauchi, Tomoki Tabuchi, Yoshikazu Hirai, Masayuki Iwamoto, Toshiyuki Tsuchiya, Hirofumi Shimizu, and Osamu Tabata
    • Organizer
      Tranducers2019
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Microchannel Fabrication using a Photo Patternable Adhesive Material for Recording Conformational Changes of KcsA Channel with the Diffracted X-ray Tracking Method2018

    • Author(s)
      Yoshikazu Hirai, Yasuaki Mori, Tomoki Tabuchi, Hirofumi Shimizu, Toshiyuki Tsuchiya, Osamu Tabata,
    • Organizer
      The EUROSENSORS 2018
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Structural Analysis of KcsA by Cryo-EM Single Particle Analysis2018

    • Author(s)
      Hiroko Takazaki, Hirofumi Shimizu, Kaoru Mitsuoka, Takuo Yasunaga
    • Organizer
      第55回日本生物物理学会年会
    • Related Report
      2018 Annual Research Report
  • [Remarks] 福井大学統合生理学

    • URL

      https://www.med.u-fukui.ac.jp/laboratory/integrative/

    • Related Report
      2019 Annual Research Report

URL: 

Published: 2018-04-23   Modified: 2022-01-27  

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