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Velocity imaging of turbulence flow using Rheo-NMR

Research Project

Project/Area Number 18KK0075
Research Category

Fund for the Promotion of Joint International Research (Fostering Joint International Research (B))

Allocation TypeMulti-year Fund
Review Section Medium-sized Section 13:Condensed matter physics and related fields
Research InstitutionKyoto University

Principal Investigator

Sugase Kenji  京都大学, 工学研究科, 准教授 (00300822)

Co-Investigator(Kenkyū-buntansha) 森本 大智  京都大学, 工学研究科, 助教 (40746616)
Walinda Erik  京都大学, 医学研究科, 助教 (80782391)
Project Period (FY) 2018-10-09 – 2022-03-31
Project Status Completed (Fiscal Year 2021)
Budget Amount *help
¥17,940,000 (Direct Cost: ¥13,800,000、Indirect Cost: ¥4,140,000)
Fiscal Year 2020: ¥7,150,000 (Direct Cost: ¥5,500,000、Indirect Cost: ¥1,650,000)
Fiscal Year 2019: ¥5,850,000 (Direct Cost: ¥4,500,000、Indirect Cost: ¥1,350,000)
Fiscal Year 2018: ¥4,940,000 (Direct Cost: ¥3,800,000、Indirect Cost: ¥1,140,000)
KeywordsRheo-NMR / 速度イメージング / off-center Couette cell / 乱流 / タンパク質凝集 / 線維化
Outline of Final Research Achievements

Rheo-NMR is an NMR system in which a glass rod is inserted into an NMR tube and rotated to generate a flow while performing NMR measurements. In this study, we investigated the flow generated in the NMR tube by shifting the axis of rotation of the glass rod, and furthermore, we aimed to fabricate a new Rheo-NMR system that can perform high-sensitivity, high-resolution NMR measurements while the axis of rotation is shifted. The results of water flow imaging at the Polymer Research Institute in Germany, with which we are collaborating, show that a flow partially rotating in the opposite direction to that of the glass rod is generated. The development of the new Rheo-NMR system has progressed to the stage where it can be tested by attaching it to an NMR system.

Academic Significance and Societal Importance of the Research Achievements

生体内を含む自然界では溶液の流れが普遍的に存在し、そのような流れは様々な分子に多様な影響を及ぼす。例えば、流れはリゾチームやアスピリンの結晶化を促進する。このような現象はよく知られたものであるが、なぜそうなるのかはよく分かっていない。そもそも流れの中の分子を原子レベルで解析できるのはRheo-NMRだけである。ただし、従来のRheo-NMRは回転軸がNMR管の中心に来るように設計され、流れの向きが揃った層流だけを発生させる。一方、本研究では回転軸をずらした際に生じる乱流に着目し、その性質の一端を明らかにした。本研究結果は、流れという非平衡系に関する学問を進展させるものである。

Report

(6 results)
  • 2021 Annual Research Report   Final Research Report ( PDF )
  • 2020 Research-status Report
  • 2019 Research-status Report
  • 2018 Research-status Report
  • Products Report
  • Research Products

    (23 results)

All 2023 2021 2020 2019 Other

All Int'l Joint Research (4 results) Journal Article (9 results) (of which Int'l Joint Research: 3 results,  Peer Reviewed: 9 results) Presentation (3 results) (of which Int'l Joint Research: 3 results,  Invited: 1 results) Book (1 results) Remarks (5 results) Patent(Industrial Property Rights) (1 results)

  • [Int'l Joint Research] IPF Dresden(ドイツ)

    • Related Report
      2021 Annual Research Report
  • [Int'l Joint Research] Stockholm University(スウェーデン)

    • Related Report
      2020 Research-status Report
  • [Int'l Joint Research] Institute for Polymer Research(ドイツ)

    • Related Report
      2019 Research-status Report
  • [Int'l Joint Research] IPF Dresden(ドイツ)

    • Related Report
      2018 Research-status Report
  • [Journal Article] Effects of Weak Nonspecific Interactions with ATP on Proteins2021

    • Author(s)
      Nishizawa Mayu、Walinda Erik、Morimoto Daichi、Kohn Benjamin、Scheler Ulrich、Shirakawa Masahiro、Sugase Kenji
    • Journal Title

      Journal of the American Chemical Society

      Volume: 143 Issue: 31 Pages: 11982-11993

    • DOI

      10.1021/jacs.0c13118

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Multiple-State Monitoring of SOD1 Amyloid Formation at Single-Residue Resolution by Rheo-NMR Spectroscopy2021

    • Author(s)
      Iwakawa Naoto、Morimoto Daichi、Walinda Erik、Shirakawa Masahiro、Sugase Kenji
    • Journal Title

      Journal of the American Chemical Society

      Volume: 143 Issue: 28 Pages: 10604-10613

    • DOI

      10.1021/jacs.1c02974

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Backbone resonance assignments of the A2 domain of mouse von Willebrand factor2021

    • Author(s)
      Morimoto Daichi、Osugi Masanori、Mahana Yutaka、Walinda Erik、Shirakawa Masahiro、Sugase Kenji
    • Journal Title

      Biomolecular NMR Assignments

      Volume: 15 Issue: 2 Pages: 427-431

    • DOI

      10.1007/s12104-021-10041-8

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Molecular recognition and deubiquitination of cyclic K48-linked ubiquitin chains by OTUB12021

    • Author(s)
      Sorada Tomoki、Morimoto Daichi、Walinda Erik、Sugase Kenji
    • Journal Title

      Biochemical and Biophysical Research Communications

      Volume: 562 Pages: 94-99

    • DOI

      10.1016/j.bbrc.2021.05.031

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Expression, solubility monitoring, and purification of the co-folded LUBAC LTM domain by structure-guided tandem folding in autoinducing cultures2021

    • Author(s)
      Walinda Erik、Morimoto Daichi、Sorada Tomoki、Iwai Kazuhiro、Sugase Kenji
    • Journal Title

      Protein Expression and Purification

      Volume: 187 Pages: 105953-105953

    • DOI

      10.1016/j.pep.2021.105953

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Transient Diffusive Interactions with a Protein Crowder Affect Aggregation Processes of Superoxide Dismutase 1 β-Barrel2021

    • Author(s)
      Iwakawa Naoto、Morimoto Daichi、Walinda Erik、Leeb Sarah、Shirakawa Masahiro、Danielsson Jens、Sugase Kenji
    • Journal Title

      The Journal of Physical Chemistry B

      Volume: 125 Issue: 10 Pages: 2521-2532

    • DOI

      10.1021/acs.jpcb.0c11162

    • Related Report
      2020 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Visualizing protein motion in Couette flow by all-atom molecular dynamics2020

    • Author(s)
      Walinda Erik、Morimoto Daichi、Shirakawa Masahiro、Scheler Ulrich、Sugase Kenji
    • Journal Title

      Biochimica et Biophysica Acta (BBA) - General Subjects

      Volume: 1864 Issue: 2 Pages: 129383-129383

    • DOI

      10.1016/j.bbagen.2019.06.006

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] 生体分子レオロジーNMRの開発と応用2019

    • Author(s)
      森本 大智、菅瀬 謙治
    • Journal Title

      日本核磁気共鳴学会機関誌

      Volume: 10 Pages: 64-48

    • Related Report
      2019 Research-status Report
    • Peer Reviewed
  • [Journal Article] 高感度Rheo-NMRによるアミロイド線維化過程のその場観察2019

    • Author(s)
      森本 大智、菅瀬 謙治
    • Journal Title

      月刊「細胞」

      Volume: 685 Pages: 32-36

    • Related Report
      2019 Research-status Report
    • Peer Reviewed
  • [Presentation] In situ Monitoring of Amyloid Fibril Formation Processes Using Rheo-NMR2019

    • Author(s)
      Kenji Sugase
    • Organizer
      8th APNMR
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Amyloid formation of poly-ubiquitin chains investigated by biological rheo-NMR spectroscopy2019

    • Author(s)
      Daichi Morimoto
    • Organizer
      EUROMAR 2019
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research
  • [Presentation] Molecular fluid dynamics description of Rheo-NMR2019

    • Author(s)
      Walinda Erik
    • Organizer
      EUROMAR 2019
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research
  • [Book] NMRによる有機材料分析と その試料前処理、データ解釈2021

    • Author(s)
      森本大智、菅瀬謙治
    • Total Pages
      676
    • Publisher
      技術情報協会
    • ISBN
      9784861048609
    • Related Report
      2021 Annual Research Report
  • [Remarks] 高分解能で見るアミロイド線維形成

    • URL

      https://www.kyoto-u.ac.jp/ja/research-news/2021-07-09-2

    • Related Report
      2021 Annual Research Report
  • [Remarks] 凝集抑制剤としてのATPの機能を解明 -ATPが神経変性疾患の発症を抑制する-

    • URL

      https://www.kyoto-u.ac.jp/ja/research-news/2021-08-03

    • Related Report
      2021 Annual Research Report
  • [Remarks] Publication

    • URL

      http://www.moleng.kyoto-u.ac.jp/~moleng_01/publications.html

    • Related Report
      2020 Research-status Report
  • [Remarks] Publications

    • URL

      http://www.moleng.kyoto-u.ac.jp/~moleng_01/publications.html

    • Related Report
      2019 Research-status Report
  • [Remarks] Research Highlights

    • URL

      http://www.moleng.kyoto-u.ac.jp/~moleng_01/research.html

    • Related Report
      2019 Research-status Report
  • [Patent(Industrial Property Rights)] 剪断流を発生させる器具2023

    • Inventor(s)
      菅瀬謙治、森本大智、山本昭彦、保科好秀
    • Industrial Property Rights Holder
      国立大学法人京都大学、エアープロ株式会社
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2023-170462
    • Filing Date
      2023
    • Related Report
      Products Report

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Published: 2018-10-12   Modified: 2025-03-27  

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