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Antibodies targeting dynamic epitopes generated by posttranslational protein glycosylation

Research Project

Project/Area Number 19H00918
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Review Section Medium-sized Section 37:Biomolecular chemistry and related fields
Research InstitutionHokkaido University

Principal Investigator

Nishimura Shin-Ichiro  北海道大学, 先端生命科学研究院, 教授 (00183898)

Co-Investigator(Kenkyū-buntansha) 田中 良和  東北大学, 生命科学研究科, 教授 (20374225)
比能 洋  北海道大学, 先端生命科学研究院, 教授 (70333333)
尾瀬 農之  北海道大学, 先端生命科学研究院, 教授 (80380525)
Project Period (FY) 2019-04-01 – 2023-03-31
Project Status Completed (Fiscal Year 2022)
Budget Amount *help
¥45,370,000 (Direct Cost: ¥34,900,000、Indirect Cost: ¥10,470,000)
Fiscal Year 2022: ¥7,020,000 (Direct Cost: ¥5,400,000、Indirect Cost: ¥1,620,000)
Fiscal Year 2021: ¥11,440,000 (Direct Cost: ¥8,800,000、Indirect Cost: ¥2,640,000)
Fiscal Year 2020: ¥13,260,000 (Direct Cost: ¥10,200,000、Indirect Cost: ¥3,060,000)
Fiscal Year 2019: ¥13,650,000 (Direct Cost: ¥10,500,000、Indirect Cost: ¥3,150,000)
KeywordsDynamic epitope theory / Glycopeptidic epitope / Epitope defined antibody / Anti-MUC1 mAb / がん治療用抗体 / X線結晶構造解析 / 機能改変抗体 / 二重特異性抗体 / 動的エピトープ / 抗体医薬 / ED抗体 / 糖ペプチド抗原 / 構造生物学 / Anti-MUC1 antibody
Outline of Research at the Start

西村(研究代表者)はタンパク質の抗原性の本質であるエピトープ(抗原決定基)領域の立体構造は疾患依存的な翻訳後糖鎖修飾の過程でダイナミックに変化するという「抗原構造形成における新たな分子機構」を発見し、このメカニズムで生成する新たな疾患特異的な抗原決定基を「動的エピトープ」と命名した。本研究課題では企図した糖ペプチドエピトープを標的とする抗体をED抗体(epitope-defined antibody)と位置付けて、MUC1の細胞外ドメインに生成する多様な動的エピトープを標的とする新たなED抗体の開発とそれらED抗体からの新しい創薬モダリティーの創出を目指す。

Outline of Final Research Achievements

In the present study, we succeeded in the development of novel antibodies and an innovative drug modality targeting various “dynamic epitopes” in the cell membrane-tethered MUC1 that accelerates cancer proliferation and metastasis. These antibody drug candidates uncovered that human pancreatic cancer cells express high level of MUC1 molecule bearing the dynamic epitope recognized by the antibody. Surprisingly, it was also demonstrated for the first time that exosomes derived from pancreatic cancer cells also display cargo MUC1 with the dynamic epitope on their membrane surface. Our findings will contribute to the acceleration of the development of anti-pancreatic cancer therapeutic antibody that has long remained unsuccessful.

Academic Significance and Societal Importance of the Research Achievements

本研究課題の大きな成果である「ダイナミックエピトープは未開拓の有力な標的分子の宝庫である」ということを示す多くの実験結果は、新たな視点と革新的な戦略に基づく「独創的な標的探索プラットホーム」の重要性と有効性を実証するものであり、今後このような戦略に基づく新たな診断システムや治療薬の開発が実現することで社会実装を見据えた応用研究への展開が大いに期待される。

Report

(6 results)
  • 2022 Annual Research Report   Final Research Report ( PDF )
  • 2021 Annual Research Report
  • 2020 Annual Research Report
  • 2019 Comments on the Screening Results   Annual Research Report
  • Research Products

    (97 results)

All 2023 2022 2021 2020 2019 2018 Other

All Int'l Joint Research (4 results) Journal Article (42 results) (of which Int'l Joint Research: 19 results,  Peer Reviewed: 42 results,  Open Access: 30 results) Presentation (45 results) (of which Int'l Joint Research: 6 results,  Invited: 19 results) Book (4 results) Patent(Industrial Property Rights) (2 results) (of which Overseas: 1 results)

  • [Int'l Joint Research] Universidad de La Rioja(スペイン)

    • Related Report
      2022 Annual Research Report
  • [Int'l Joint Research] Ludwig-Maximilians-University Munich(ドイツ)

    • Related Report
      2022 Annual Research Report
  • [Int'l Joint Research] Universidad de La Rioja(スペイン)

    • Related Report
      2021 Annual Research Report
  • [Int'l Joint Research] Ludwig-Maximilians-University Munich(ドイツ)

    • Related Report
      2021 Annual Research Report
  • [Journal Article] Functional characterization of 12 dihydropyrimidinase allelic variants in Japanese individuals for the prediction of 5-fluorouracil treatment-related toxicity.2023

    • Author(s)
      Hishinuma E, Narita Y, Rico E. G, Ueda A, Obuchi K, Tanaka Y, Saito S, Tadaka S, Kinoshita K, Maekawa M, Mano N, Nakayoshi T, Oda A, Hirasawa N, and Hiratsuka M.
    • Journal Title

      Drug Metabolism and Disposition

      Volume: 51 Issue: 2 Pages: 165-173

    • DOI

      10.1124/dmd.122.001045

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Quick and Spontaneous Transformation between [3Fe_4S] and [4Fe_4S] Iron_Sulfur Clusters in the tRNA-Thiolation Enzyme TtuA.2023

    • Author(s)
      Ishizaka M, Chen M, Narai S, Tanaka Y, Ose T, Horitani M, Yao M.
    • Journal Title

      International Journal of Molecular Sciences

      Volume: 24 Issue: 1 Pages: 833-833

    • DOI

      10.3390/ijms24010833

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Altering the Modular Architecture of Galectins Affects its Binding with Synthetic α‐Dystroglycan O‐Mannosylated Core M1 Glycoconjugates In situ2023

    • Author(s)
      Villones Lareno L.、Ludwig Anna-Kristin、Kikuchi Seiya、Ochi Rika、Nishimura Shin-Ichiro、Gabius Hans-Joachim、Kaltner Herbert、Hinou Hiroshi
    • Journal Title

      ChemBioChem

      Volume: - Issue: 14

    • DOI

      10.1002/cbic.202200783

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Clinical utility of a serum glycome analysis in patients with colorectal cancer2022

    • Author(s)
      Takei Daisuke、Harada Keita、Nouso Kazuhiro、Miyahara Koji、Dohi Chihiro、Matsushita Hiroshi、Kinugasa Hideaki、Hiraoka Sakiko、Nishimura Shin‐Ichiro、Okada Hiroyuki
    • Journal Title

      Journal of Gastroenterology and Hepatology

      Volume: 37 Issue: 4 Pages: 727-733

    • DOI

      10.1111/jgh.15781

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Selective reaction monitoring approach using structure-defined synthetic glycopeptides for validating glycopeptide biomarkers pre-determined by bottom-up glycoproteomics2022

    • Author(s)
      Shiratori Kouta、Yokoi Yasuhiro、Wakui Hajime、Hirane Nozomi、Otaki Michiru、Hinou Hiroshi、Yoneyama Tohru、Hatakeyama Shingo、Kimura Satoshi、Ohyama Chikara、Nishimura Shin-Ichiro
    • Journal Title

      RSC Advances

      Volume: 12 Issue: 33 Pages: 21385-21393

    • DOI

      10.1039/d2ra02903k

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Generation 6 Polyamidoamine Dendrimer Provides an Ideal Nanoparticular Platform for Enzyme-assisted Synthesis of Glycopeptides Having Bulky and Complex Glycans2022

    • Author(s)
      Matsushita Takahiko、Hinou Hiroshi、Nishimura Shin-Ichiro
    • Journal Title

      Chemistry Letters

      Volume: 51 Issue: 11 Pages: 1044-1048

    • DOI

      10.1246/cl.220344

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Mouse tissue glycome atlas 2022 highlights inter-organ variation in major N-glycan profiles2022

    • Author(s)
      Otaki Michiru、Hirane Nozomi、Natsume-Kitatani Yayoi、Nogami Itoh Mari、Shindo Masanori、Kurebayashi Yoichi、Nishimura Shin-Ichiro
    • Journal Title

      Scientific Reports

      Volume: 12 Issue: 1 Pages: 17804-17804

    • DOI

      10.1038/s41598-022-21758-4

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Exploring the In situ pairing of human galectins toward synthetic O-mannosylated core M1 glycopeptides of α-dystroglycan2022

    • Author(s)
      Villones Lareno L.、Ludwig Anna-Kristin、Kumeta Hiroyuki、Kikuchi Seiya、Ochi Rika、Aizawa Tomoyasu、Nishimura Shin-Ichiro、Gabius Hans-Joachim、Hinou Hiroshi
    • Journal Title

      Scientific Reports

      Volume: 12 Issue: 1 Pages: 17800-17800

    • DOI

      10.1038/s41598-022-22758-0

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] BOA/DHB/Na: An Efficient UV-MALDI Matrix for High-Sensitivity and Auto-Tagging Glycomics2022

    • Author(s)
      Barada Erina、Hinou Hiroshi
    • Journal Title

      International Journal of Molecular Sciences

      Volume: 23 Issue: 20 Pages: 12510-12510

    • DOI

      10.3390/ijms232012510

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Direct MALDI Glycotyping of Glycoproteins toward Practical Subtyping of Biological Samples2022

    • Author(s)
      Urakami Shogo、Hinou Hiroshi
    • Journal Title

      ACS Omega

      Volume: 7 Issue: 43 Pages: 39280-39286

    • DOI

      10.1021/acsomega.2c05429

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] An ancestral function of strigolactones as symbiotic rhizosphere signals.2022

    • Author(s)
      Kodama K, Rich k, Yoda A, Shimazaki S, Xie X, Akiyama K.,Mizuno Y, Komatsu A., Luo Y, Suzuki H, Kameoka H, Libourel C, Keller J, Sakakibara K, Nishiyama T, Nakagawa T, Mashiguchi K, Uchida K, Yoneyama K, Tanaka Y, Yamaguchi S, Shimamura M , Delaux P, Nomu
    • Journal Title

      Nature Communications

      Volume: 13 Issue: 1 Pages: 3974-3974

    • DOI

      10.1038/s41467-022-31708-3

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] A marine sponge-derived lectin reveals hidden pathway for thrombopoietin receptor activation2022

    • Author(s)
      Watari Hiromi、Kageyama Hiromu、Masubuchi Nami、Nakajima Hiroya、Onodera Kako、Focia Pamela J.、Oshiro Takumi、Matsui Takashi、Kodera Yoshio、Ogawa Tomohisa、Yokoyama Takeshi、Hirayama Makoto、Hori Kanji、Freymann Douglas M.、Imai Misa、Komatsu Norio、Araki Marito、Tanaka Yoshikazu、Sakai Ryuichi
    • Journal Title

      Nature Communications

      Volume: 13 Issue: 1 Pages: 7262-7262

    • DOI

      10.1038/s41467-022-34921-2

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Antiadhesive nanosome elicits role of glycocalyx of tumor cell-derived exosomes in the organotropic cancer metastasis2022

    • Author(s)
      Koide Ryosuke、Hirane Nozomi、Kambe Daiki、Yokoi Yasuhiro、Otaki Michiru、Nishimura Shin-Ichiro
    • Journal Title

      Biomaterials

      Volume: 280 Pages: 121314-121314

    • DOI

      10.1016/j.biomaterials.2021.121314

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Glycan‐Selective MALDI In‐Source Decay Analysis of Intact Glycoproteins2021

    • Author(s)
      Urakami Shogo、Hinou Hiroshi
    • Journal Title

      Analysis & Sensing

      Volume: 2 Issue: 2

    • DOI

      10.1002/anse.202100040

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Structural insights reveal the second base catalyst of isomaltose glucohydrolase2021

    • Author(s)
      Tagami Takayoshi、Chen Minghao、Furunaga Yuta、Kikuchi Asako、Sadahiro Juri、Lang Weeranuch、Okuyama Masayuki、Tanaka Yoshikazu、Iwasaki Tomohito、Yao Min、Kimura Atsuo
    • Journal Title

      The FEBS Journal

      Volume: 289 Issue: 4 Pages: 1118-1134

    • DOI

      10.1111/febs.16237

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Anti-EGFR antibody 528 binds to domain III of EGFR at a site shifted from the cetuximab epitope2021

    • Author(s)
      Makabe Koki、Yokoyama Takeshi、Uehara Shiro、Uchikubo-Kamo Tomomi、Shirouzu Mikako、Kimura Kouki、Tsumoto Kouhei、Asano Ryutaro、Tanaka Yoshikazu、Kumagai Izumi
    • Journal Title

      Scientific Reports

      Volume: 11 Issue: 1 Pages: 5790-5790

    • DOI

      10.1038/s41598-021-84171-3

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Biochemical and structural investigation of rutinosidase from Aspergillus oryzae2021

    • Author(s)
      Makabe Koki, Hirota Ruka, Shiono Yoshihito, Tanaka Yoshikazu, Koseki Takuya
    • Journal Title

      Applied and Environmental Microbiology

      Volume: 15 Issue: 3

    • DOI

      10.1128/aem.02438-20

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Analysis of the correlation between alterations in N-glycans and invasiveness in liver cancer cell lines2020

    • Author(s)
      Takahashi Hidenori, Kamiyama Toshiya, Hirane Nozomi, Kobayashi Nozomi, Aiyama Takeshi, Nagatsu Akihisa, Shimada Shingo, Orimo Tatsuya, Kakisaka Tatsuhiko, Fukai Moto, Yokoo Hideki, Kamachi Hirofumi., Nishimura Shin-Ichiro, Taketomi Akinobu
    • Journal Title

      Oncology Reports

      Volume: 44 Issue: 6 Pages: 2757-2769

    • DOI

      10.3892/or.2020.7795

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Amplified detection of breast cancer autoantibodies using MUC1-based Tn antigen mimics2020

    • Author(s)
      Pablo A. Guillen-Poza, Elena Matilde Sanchez-Fernandez, Gerard Artigas, Jose Manuel Garcia Fernande, Hinou Hiroshi, Carmen Ortiz Mellet, Nishimura Shin-Ichiro, Fayna Garcia-Martin
    • Journal Title

      Journal of Medicinal Chemistry

      Volume: 63 Issue: 15 Pages: 8524-8533

    • DOI

      10.1021/acs.jmedchem.0c00908

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Effect of Site-specific O-Glycosylation on the Structural Behavior of NOTCH1 Receptor Extracellular EGF-like Domains 11 and 102020

    • Author(s)
      Yokoi Yasuhiro, Nishimura Shin-Ichiro
    • Journal Title

      Chemistry - A European Journal

      Volume: 26 Issue: 54 Pages: 12363-12373

    • DOI

      10.1002/chem.202002652

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] A straightforward approach to antibodies recognising cancer specific glycopeptidic neoepitopes2020

    • Author(s)
      Wakui Hajime、Tanaka Yoshikazu、Ose Toyoyuki、Matsumoto Isamu、Kato Koji、Min Yao、Tachibana Taro、Sato Masaharu、Naruchi Kentaro、Martin Fayna Garcia、Hinou Hiroshi、Nishimura Shin-Ichiro
    • Journal Title

      Chemical Science

      Volume: 11 Issue: 19 Pages: 4999-5006

    • DOI

      10.1039/d0sc00317d

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] The Measles Virus V Protein Binding Site to STAT2 Overlaps That of IRF92020

    • Author(s)
      Nagano Yuma、Sugiyama Aoi、Kimoto Madoka、Wakahara Takuya、Noguchi Yasuyo、Jiang Xinxin、Saijo Shinya、Shimizu Nobutaka、Yabuno Nana、Yao Min、Gooley Paul R.、Moseley Gregory W.、Tadokoro Takashi、Maenaka Katsumi、Ose Toyoyuki
    • Journal Title

      Journal of Virology

      Volume: 94 Issue: 17

    • DOI

      10.1128/jvi.01169-20

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Structural comparison of the C-terminal domain of functionally divergent lyssavirus P proteins2020

    • Author(s)
      Sugiyama Aoi、Nomai Tomo、Jiang Xinxin、Minami Miku、Yao Min、Maenaka Katsumi、Ito Naoto、Gooley Paul R.、Moseley Gregory W.、Ose Toyoyuki
    • Journal Title

      Biochemical and Biophysical Research Communications

      Volume: 529 Issue: 2 Pages: 507-512

    • DOI

      10.1016/j.bbrc.2020.05.195

    • NAID

      120007097390

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Efficient preparation of human and mouse CD1d proteins using silkworm baculovirus expression system2020

    • Author(s)
      Kusaka Hiroki、Kita Shunsuke、Tadokoro Takashi、Yoshida Kouki、Kasai Yoshiyuki、Niiyama Harumi、Fujimoto Yukari、Hanashima Shinya、Murata Michio、Sugiyama Shigeru、Ose Toyoyuki、Kuroki Kimiko、Maenaka Katsumi
    • Journal Title

      Protein Expression and Purification

      Volume: 172 Pages: 105631-105631

    • DOI

      10.1016/j.pep.2020.105631

    • NAID

      120007147244

    • Related Report
      2020 Annual Research Report 2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Structure of HIV-2 Nef Reveals Features Distinct from HIV-1 Involved in Immune Regulation2020

    • Author(s)
      Hirao Kengo、Andrews Sophie、Kuroki Kimiko、Kusaka Hiroki、Tadokoro Takashi、Kita Shunsuke、Ose Toyoyuki、Rowland-Jones Sarah L.、Maenaka Katsumi
    • Journal Title

      iScience

      Volume: 23 Issue: 1 Pages: 100758-100758

    • DOI

      10.1016/j.isci.2019.100758

    • Related Report
      2020 Annual Research Report 2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] The N-terminal amino-latch region of Hlg2 component of staphylococcal bi-component γ-haemolysin is dispensable for prestem release to form β-barrel pores2020

    • Author(s)
      Takeda Kein、Tanaka Yoshikazu、Kaneko Jun
    • Journal Title

      The Journal of Biochemistry

      Volume: 168 Issue: 4 Pages: 349-354

    • DOI

      10.1093/jb/mvaa052

    • NAID

      40022393358

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Association behavior and control of the quality of cancer therapeutic bispecific diabodies expressed in Escherichia coli2020

    • Author(s)
      Hikaru Nakazawa, Tomoko Onodera-Sugano, Aruto Sugiyama, Yoshikazu Tanaka, Takamitsu Hattori, Teppei Niide, Hiromi Ogata, Ryutaro Asano, Izumi Kumagai, Mitsuo Umetsu
    • Journal Title

      Biochemical Engineering Journal

      Volume: 160 Pages: 1-9

    • DOI

      10.1016/j.bej.2020.107636

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Click Synthesis of Size and Shape-Tunable Star Polymers with Functional Macrocyclic Cores for Synergistic DNA Complexation and Delivery2020

    • Author(s)
      Carbajo-Gordillo Ana I, Jimenez Blanco Jose L, Benito M Juan, Hugo Lana, Gema Marcelo, Di Giorgio Christophe, Przybylski Cedric, Hinou Hiroshi, Valentin Cena, Ortiz Mellet Carmen, Mendicuti Francisco, Tros de ILarduya Conchita, Garcia Fernandez Jose
    • Journal Title

      Biomacromolecules

      Volume: 21 Issue: 12 Pages: 5173-5188

    • DOI

      10.1021/acs.biomac.0c01283

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] A straightforward approach to antibodies recognising cancer specific glycopeptidic neoepitopes2020

    • Author(s)
      Wakui Hajime、Tanaka Yoshikazu、Ose Toyoyuki、Matsumoto Isamu、Kato Koji、Yao Min、Tachibana Taro、Sato Masaharu、Naruchi Kentaro、Garca-Martin Fayna、Hinou Hiroshi、Nishimura Shin-Ichiro
    • Journal Title

      Chemical Science

      Volume: -

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Synthesis, conformational analysis and in vivo assays of an anti-cancer vaccine that features an unnatural antigen based on an sp2-iminosugar fragment2020

    • Author(s)
      Bermejo Iris A.、Navo Claudio D.、Castro-Lopez Jorge、Guerreiro Ana、Garcia-Martin Fayna、Hinou Hiroshi、Nishimura Shin-Ichiro、Mellet Carmen Ortiz、Avenoza Alberto、Busto Jeses H.、Corzana Francisco、et al.
    • Journal Title

      Chemical Science

      Volume: 11 Issue: 15 Pages: 3996-4006

    • DOI

      10.1039/c9sc06334j

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Impaired O-Glycosylation at Consecutive Threonine TTX Motifs in Mucins Generates Conformationally Restricted Cancer Neoepitopes2020

    • Author(s)
      Hayakawa Shun、Matsushita Takahiko、Yokoi Yasuhiro、Wakui Hajime、Garcia-Martin Fayna、Hinou Hiroshi、Matsuoka Koji、Nouso Kazuhiro、Kamiyama Toshiya、Taketomi Akinobu、Nishimura Shin-Ichiro
    • Journal Title

      Biochemistry

      Volume: 59 Issue: 12 Pages: 1221-1241

    • DOI

      10.1021/acs.biochem.0c00007

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Serum N-glycan profiling can predict biopsy-proven graft rejection after living kidney transplantation.2020

    • Author(s)
      Soma O, Hatakeyama S, Yoneyama T, Saito M, Sasaki H, Tobisawa Y, Noro D, Suzuki Y, Tanaka M, Nishimura SI, Harada H, Ishida H, Tanabe K, Satoh S, Ohyama C.
    • Journal Title

      Clin Exp Nephrol

      Volume: 24 Issue: 2 Pages: 174-184

    • DOI

      10.1007/s10157-019-01820-8

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The [4Fe-4S] cluster of sulfurtransferase TtuA desulfurizes TtuB during tRNA modification in Thermus thermophilus2020

    • Author(s)
      Minghao Chen, Masato Ishizaka, Shun Narai, Masaki Horitani, Naoki Shigi, Min Yao & Yoshikazu Tanaka
    • Journal Title

      Communications Biology

      Volume: 3 Issue: 1 Pages: 168-168

    • DOI

      10.1038/s42003-020-0895-3

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Biophysical characterization and single‐chain Fv construction of a neutralizing antibody to measles virus2019

    • Author(s)
      Tadokoro Takashi、Jahan Mst Lubna、Ito Yuri、Tahara Maino、Chen Surui、Imai Atsutoshi、Sugimura Natsumi、Yoshida Koki、Saito Mizuki、Ose Toyoyuki、Hashiguchi Takao、Takeda Makoto、Fukuhara Hideo、Maenaka Katsumi
    • Journal Title

      The FEBS Journal

      Volume: 287 Issue: 1 Pages: 145-159

    • DOI

      10.1111/febs.14991

    • NAID

      120006866527

    • Related Report
      2020 Annual Research Report 2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Serum N-glycan profiling is a potential biomarker for castration-resistant prostate cancer2019

    • Author(s)
      Matsumoto Teppei、Hatakeyama Shingo、Yoneyama Tohru、Tobisawa Yuki、Ishibashi Yusuke、Yamamoto Hayato、Yoneyama Takahiro、Hashimoto Yasuhiro、Ito Hiroyuki、Nishimura Shin-Ichiro、Ohyama Chikara
    • Journal Title

      Scientific Reports

      Volume: 9 Issue: 1 Pages: 16761-16761

    • DOI

      10.1038/s41598-019-53384-y

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Antiadhesive Nanosomes Facilitate Targeting of the Lysosomal GlcNAc Salvage Pathway through Derailed Cancer Endocytosis2019

    • Author(s)
      Koide Ryosuke、Nishimura Shin‐Ichiro
    • Journal Title

      Angewandte Chemie International Edition

      Volume: 58 Issue: 41 Pages: 14513-14518

    • DOI

      10.1002/anie.201907778

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structural Elucidation of Viral Antagonism of Innate Immunity at the STAT1 Interface2019

    • Author(s)
      Hossain Md. Alamgir、Larrous Florence、Rawlinson Stephen M.、Zhan Jingyu、Sethi Ashish、Ibrahim Youssef、Aloi Maria、Lieu Kim G.、Mok Yee-Foong、Griffin Michael D.W.、Ito Naoto、Ose Toyoyuki、Bourhy Herv?、Moseley Gregory W.、Gooley Paul R.
    • Journal Title

      Cell Reports

      Volume: 29 Issue: 7 Pages: 1934-1945.e8

    • DOI

      10.1016/j.celrep.2019.10.020

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Structural and Functional Basis for LILRB Immune Checkpoint Receptor Recognition of HLA-G Isoforms2019

    • Author(s)
      Kuroki Kimiko、Matsubara Haruki、Kanda Ryo、Miyashita Naoyuki、Shiroishi Mitsunori、Fukunaga Yuko、Kamishikiryo Jun、Fukunaga Atsushi、Fukuhara Hideo、Hirose Kaoru、Hunt Joan S.、Sugita Yuji、Kita Shunsuke、Ose Toyoyuki、Maenaka Katsumi
    • Journal Title

      The Journal of Immunology

      Volume: 203 Issue: 12 Pages: 3386-3394

    • DOI

      10.4049/jimmunol.1900562

    • NAID

      120007018379

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Specificity of Morbillivirus Hemagglutinins to Recognize SLAM of Different Species2019

    • Author(s)
      Fukuhara Hideo、Ito Yuri、Sako Miyuki、Kajikawa Mizuho、Yoshida Koki、Seki Fumio、Mwaba Mwila Hilton、Hashiguchi Takao、Higashibata Masa-aki、Ose Toyoyuki、Kuroki Kimiko、Takeda Makoto、Maenaka Katsumi
    • Journal Title

      Viruses

      Volume: 11 Issue: 8 Pages: 761-761

    • DOI

      10.3390/v11080761

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Protein encapsulation in the hollow space of hemocyanin crystals containing a covalently conjugated ligand2019

    • Author(s)
      Tsubasa Hashimoto, Yuxin Ye, Mihoko Ui, Tohohisa Ogawa, Takashi Matsui, and Yoshikazu Tanaka
    • Journal Title

      Biochem. Biophys. Res. Commun.

      Volume: 印刷中 Issue: 1 Pages: 31-36

    • DOI

      10.1016/j.bbrc.2019.04.062

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Crystal structure of the catalytic unit of GH87-type α-1,3-glucanase Agl-KA from Bacillus circulans2019

    • Author(s)
      S. Yano, W. Suyotha, N. Oruro, T. Matsui, S. Shiga, T. Itoh, T. Hibi, Y. Tanaka, M. Wakayama, K. Makabe
    • Journal Title

      Scientific Reports

      Volume: 9 Issue: 1 Pages: 15259-15259

    • DOI

      10.1038/s41598-019-51822-5

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] 1H, 15N and 13C resonance assignments of the C-terminal domain of the P protein of the Nishigahara strain of rabies virus2018

    • Author(s)
      Zhan Jingyu、Hossain Md. Alamgir、Sethi Ashish、Ose Toyoyuki、Moseley Gregory W.、Gooley Paul R.
    • Journal Title

      Biomolecular NMR Assignments

      Volume: 13 Issue: 1 Pages: 5-8

    • DOI

      10.1007/s12104-018-9841-4

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Presentation] Glycotyping: Old and New Concept of Glycoscience2023

    • Author(s)
      比能洋
    • Organizer
      108th Indian Science Congress
    • Related Report
      2022 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] エクソソームのユニークな構造と機能に学ぶ新しい創薬研究への展開2023

    • Author(s)
      西村紳一郎
    • Organizer
      官民研究開発投資拡大プログラム(PRISM)「新薬創出を加速する人工知能の開発」令和4年度成果報告会
    • Related Report
      2022 Annual Research Report
  • [Presentation] 血中エクソソームの由来臓器を糖鎖解析により推定する基盤技術の開発2022

    • Author(s)
      西村紳一郎
    • Organizer
      官民研究開発投資拡大プログラム(PRISM)「新薬創出を加速する人工知能の開発」令和3年度成果報告会
    • Related Report
      2022 Annual Research Report
  • [Presentation] ストップコドンリードスルーの分子機構解明2022

    • Author(s)
      田中良和
    • Organizer
      第22回日本蛋白質科学会年会
    • Related Report
      2022 Annual Research Report
  • [Presentation] タンパク質立体構造解析と質量分析の融合研究2022

    • Author(s)
      田中良和
    • Organizer
      日本プロテオーム学会2022年大会
    • Related Report
      2022 Annual Research Report
    • Invited
  • [Presentation] 前転移ニッチェを標的とする革新的薬物輸送システムの創製 / Creation of an innovative drug delivery system targeting pre-metastatic niche2022

    • Author(s)
      西村紳一郎
    • Organizer
      第9回日本細胞外小胞学会
    • Related Report
      2022 Annual Research Report
    • Invited
  • [Presentation] ヘモリシンの立体構造解析と構造情報を生かしたデザイン2022

    • Author(s)
      田中良和
    • Organizer
      分子ロボティクス研究会
    • Related Report
      2022 Annual Research Report
    • Invited
  • [Presentation] MALDI Glycotyping of Glycoproteins, Biofluids, and Bacterial O-antigens2022

    • Author(s)
      比能洋
    • Organizer
      International Congress on Pure and Applied Chemistry (ICPAC) Kota Kinabalu 2022
    • Related Report
      2022 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 放線菌由来TetR型転写調節蛋白質LanKのX線結晶構造解析2022

    • Author(s)
      次田篤史、上原史朗、松井崇、横山武司、Iryna Ostash、Bohdan Ostash、田中良和
    • Organizer
      2021年度生物物理学会(北海道支部・東北支部合同例会)
    • Related Report
      2021 Annual Research Report
  • [Presentation] 非結核性抗酸菌Mycobacterium abscessusリボソームにおけるマクロライド耐性機構の解明を目指したクライオ電子顕微鏡構造解析2022

    • Author(s)
      橋本翼、高田希美、千足啄馬、深野華子、山本健太郎、鈴木仁人、星野仁彦、横山武司、田中良和
    • Organizer
      2021年度生物物理学会(北海道支部・東北支部合同例会)
    • Related Report
      2021 Annual Research Report
  • [Presentation] 海洋生物由来レクチンThCの構造機能相関研究2022

    • Author(s)
      影山大夢、辺浩美、小野寺かこ、松井崇、小川智久、横山武司、酒井隆一、田中良和
    • Organizer
      2021年度生物物理学会(北海道支部・東北支部合同例会)
    • Related Report
      2021 Annual Research Report
  • [Presentation] Antibodies recognizing dynamic neoepitopes generated by cancer-specific truncated immature O-glycosylation2021

    • Author(s)
      西村紳一郎
    • Organizer
      The 2021 International Chemical Congress of Pacific Basin Societies / Pacifichem2021
    • Related Report
      2021 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 動的エピトープ理論-翻訳後糖鎖修飾が惹起するタンパク質の脆弱性 / The dynamic epitope theory-Vulnerability of proteins induced by posttranslational glycosylation2021

    • Author(s)
      西村紳一郎
    • Organizer
      第70回高分子討論会
    • Related Report
      2021 Annual Research Report
    • Invited
  • [Presentation] ヒト組織由来エクソソームの糖鎖プロファイリングによる新しいバイオマーカーの探索2021

    • Author(s)
      西村紳一郎
    • Organizer
      官民研究開発投資拡大プログラム(PRISM)令和二年度成果報告会
    • Related Report
      2021 Annual Research Report
  • [Presentation] 海洋天然物由来の新規生理活性タンパク質の構造機能解析2021

    • Author(s)
      田中良和
    • Organizer
      第94回日本生化学会大会のシンポジウム
    • Related Report
      2021 Annual Research Report
    • Invited
  • [Presentation] Design of staphylococcal two-component pore forming toxin to change pore formation property2021

    • Author(s)
      田中良和
    • Organizer
      第59回日本生物物理学会年会シンポジウム実験と理論の共同による生命金属動態研究の最前線
    • Related Report
      2021 Annual Research Report
    • Invited
  • [Presentation] Cryo-EM visualizes ribosomes in mammalian cell free translation system2021

    • Author(s)
      Takuma Chiashi, Takeshi Yokoyama, Yoshikazu Tanaka
    • Organizer
      日本・ウクライナ・タイ二国間交流事業合同シンポジウム
    • Related Report
      2021 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Elucidation of the binding mode of a macrolide antibiotic to NTM ribosome for understanding drug resistance mechanism by using cryo-EM2021

    • Author(s)
      Tsubasa Hashimoto, Nozomi Takada, Takuma Chiashi, Hanako Fukano, Kentaro Yamamoto, Masato Suzuki, Yoshihiko Hoshino, Takeshi Yokoyama, Yoshikazu Tanaka
    • Organizer
      第59回日本生物物理学会年会
    • Related Report
      2021 Annual Research Report
  • [Presentation] Elucidation of new action mechanism of aminoglycoside antibiotics on ribosomes using single particle cryo-electron microscopy2021

    • Author(s)
      Junta Tomono,Kosuke Asano,Masato Suzuki, Takeshi Yokoyama,Yoshikazu Tanaka
    • Organizer
      第59回日本生物物理学会年会
    • Related Report
      2021 Annual Research Report
  • [Presentation] 中性子線結晶構造解析による、タンパク質内アンモニアの観測2021

    • Author(s)
      横溝太一、梶江啓志、李龍、姚閔、尾瀬農之
    • Organizer
      日本生物物理学会支部例会北海道ー東北支部合同年会
    • Related Report
      2020 Annual Research Report
  • [Presentation] 麻疹ウイルスVタンパク質によるType I IFN経路阻害機構の解明2021

    • Author(s)
      木本円花、永野悠馬、杉山葵、姚閔、田所高志、前仲勝実、尾瀬農之
    • Organizer
      日本生物物理学会支部例会北海道ー東北支部合同年会
    • Related Report
      2020 Annual Research Report
  • [Presentation] 狂犬病ウイルスのPタンパク質によるJAK-STATシグナル伝達経路阻害機構の解明2021

    • Author(s)
      南未来、杉山葵、野間井智、蒋欣欣、前仲勝実、姚閔、尾瀬農之
    • Organizer
      日本生物物理学会支部例会北海道ー東北支部合同年会
    • Related Report
      2020 Annual Research Report
  • [Presentation] 新規レクチン様タンパク質の結晶構造解析と糖との結合解析2021

    • Author(s)
      影山大夢, 小野寺かこ, 小川智久, 横山武司, 田中良和
    • Organizer
      2020年度量子ビームサイエンスフェスタ
    • Related Report
      2020 Annual Research Report
  • [Presentation] MALDI-TOFMSによる糖質解析 ~前処理工程をどれだけ簡素化できるか~2020

    • Author(s)
      比能洋
    • Organizer
      質量分析学会第29回北海道談話会
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] 生体分子中のアンモニアを可視化する試み2020

    • Author(s)
      横溝太一、李龍、姚閔、尾瀬農之
    • Organizer
      量子生命科学会 第2回大会
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] 巨大タンパク質会合体ヘモシアニンの結晶中の空隙への生体分子の包摂2020

    • Author(s)
      田中良和
    • Organizer
      化学工学会第51回秋季大会
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] 蛋白質の立体構造解析 -X線結晶構造解析とクライオ電顕単粒子解析-2020

    • Author(s)
      田中良和
    • Organizer
      酵素工学研究会第84回講演会
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] 巨大タンパク質会合体ヘモシアニンの構造解析2020

    • Author(s)
      田中良和
    • Organizer
      農芸化学会
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] マイクロアレイおよび質量分析による糖鎖・複合糖質の機能及び構造解析2020

    • Author(s)
      比能洋
    • Organizer
      畜産とキチンキトサン勉強会
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] 化学者から見た糖鎖研究2020

    • Author(s)
      比能洋
    • Organizer
      異分野meetup week2020☆研究者コミュニティサロン☆“糖鎖研究について語ろう!”
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] 中性子線結晶構造解析によるタンパク質中のアンモニアの解析2020

    • Author(s)
      横溝太一、李龍、安達基泰、姚閔、尾瀬農之
    • Organizer
      日本結晶学会年会
    • Related Report
      2020 Annual Research Report
  • [Presentation] 免疫阻害機能の異なるリッサウイルスP蛋白質C末端ドメインの構造比較2020

    • Author(s)
      杉山葵、野間井智、蒋欣欣、南未来、前仲勝実、伊藤直人、Paul R. Gooley、Gregory W. Moseley、姚閔、尾瀬農之
    • Organizer
      日本結晶学会年会
    • Related Report
      2020 Annual Research Report
  • [Presentation] Molecular basis of JAK-STAT signal pathway inhibition by rabies virus P-protein / 狂犬病ウイルスP蛋白質によるJAK-STATシグナル阻害機構の解明2020

    • Author(s)
      杉山葵、南未来、蒋欣欣、永野悠馬、野間井智、若原拓也、前仲勝実、姚閔、尾瀬農之
    • Organizer
      蛋白質科学会年会
    • Related Report
      2020 Annual Research Report
  • [Presentation] Saframycin A生合成関連蛋白質のクライオ電子顕微鏡単粒子解析2020

    • Author(s)
      本多葵一、松井崇、小松玲子、谷藤涼、大栗博毅、横山武司、田中良和
    • Organizer
      日本生物物理学会
    • Related Report
      2020 Annual Research Report
  • [Presentation] クライオ電子顕微鏡単粒子解析による百日咳壊死毒の構造解析2020

    • Author(s)
      次田篤史、松井崇、堀口安彦、横山武司、田中良和
    • Organizer
      日本生物物理学会
    • Related Report
      2020 Annual Research Report
  • [Presentation] Crystal structure analysis of BIR3 domain of ubiquitin ligase in complex with its specific ligand for designing potent ligand2020

    • Author(s)
      Makoto Okabe, Shinichi Sato, Takeshi Yokoyama, Shusuke Tomoshige, Minoru Ishikawa, and Yoshikazu Tanaka
    • Organizer
      日本分子生物学会
    • Related Report
      2020 Annual Research Report
  • [Presentation] Structural analysis of LanK, a protein associated with the production of antibiotics in actinomycetes2020

    • Author(s)
      Shiro Uehara, Iryna Ostash, Bohdan Ostash, Takashi Matsui, Tomohisa Ogawa, Yoshikazu Tanaka
    • Organizer
      日本分子生物学会
    • Related Report
      2020 Annual Research Report
  • [Presentation] Structure analysis of protein using both electron microscopy and X-ray crystallography2020

    • Author(s)
      Yoshikazu Tanaka
    • Organizer
      ABiS Symposium; Forefront and Future of Electron Microscopic Imaging
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] 狂犬病ウイルスP蛋白質によるJAK-STATシグナル阻害機構の解明2020

    • Author(s)
      杉山葵、蒋欣欣、永野悠馬、前仲勝実、姚閔、杉田征彦、廣瀬未果、Gregory Moseley 、尾瀬農之
    • Organizer
      Negative Strand Virus - Japan
    • Related Report
      2019 Annual Research Report
  • [Presentation] ローマは一日にして成らず。されど、すべての道は?2019

    • Author(s)
      西村紳一郎
    • Organizer
      GlycoTOKYO2019
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] STAP-2の介在によりBreast tumor kinaseがSTATを活性化する機構の解明2019

    • Author(s)
      中迫純希、松尾友樹、神田諒、田中睦乃、姚閔、松田正、前仲勝実、尾瀬農之
    • Organizer
      日本生物物理学会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Smart nanomedicine targeting of lysosomal glycohydrolases through activated endocytosis of cancer cells2019

    • Author(s)
      Nishimura Shin-Ichiro
    • Organizer
      25th International Symposium on Glycoconjugates
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Novel matrix system for reflectron mode MALDI-TOF and TOF/TOF MS analysis of unmodified sialylated oligosaccharides and glycopeptides2019

    • Author(s)
      Hinou Hiroshi
    • Organizer
      Japanese-American Symposium on Applied & Translational Glycosciences、ACS Fall 2019 National
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 狂犬病ウイルスP蛋白質によるJAK-STATシグナル阻害機構の解明2019

    • Author(s)
      杉山葵、蒋欣欣、永野悠馬、野間井智、若原拓也、前仲勝実、姚閔、Gregory Mosley、尾瀬農之
    • Organizer
      蛋白質科学会年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] 巨大タンパク質会合体ヘモシアニンの構造解析 ―結晶構造と電顕構造―2019

    • Author(s)
      田中良和
    • Organizer
      2019年度日本生化学会九州支部例会
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Book] クライオ電子顕微鏡ハンドブック2023

    • Author(s)
      難波 啓一、加藤 貴之、牧野 文信、伴野 詢太,田中 良和,横山 武司
    • Total Pages
      460
    • Publisher
      エヌ・ティー・エス
    • ISBN
      9784860438043
    • Related Report
      2022 Annual Research Report
  • [Book] 臨床化学2021

    • Author(s)
      西村紳一郎、涌井初、横井康広
    • Publisher
      日本臨床化学会
    • Related Report
      2021 Annual Research Report
  • [Book] 創薬研究のための相互作用解析パーフェクト2021

    • Author(s)
      津本 浩平、前仲 勝実
    • Total Pages
      368
    • Publisher
      羊土社
    • ISBN
      9784758122566
    • Related Report
      2021 Annual Research Report
  • [Book] Vertebrate and Invertebrate Respiratory Proteins by Ulrich Hoeger and J. Robin Harris2020

    • Author(s)
      Sanae Kato, Takashi Matsui and Yoshikazu Tanaka
    • Total Pages
      24
    • Publisher
      Springer
    • ISBN
      9783030417697
    • Related Report
      2019 Annual Research Report
  • [Patent(Industrial Property Rights)] MALDI-TOFMSによる複合糖質高分子糖鎖の直接解析方法およびそれに用いるための固体マトリックス組成物2021

    • Inventor(s)
      比能 洋
    • Industrial Property Rights Holder
      比能 洋
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2021-000822
    • Filing Date
      2021
    • Related Report
      2021 Annual Research Report
  • [Patent(Industrial Property Rights)] MALDI-TOFMSによる複合糖質高分子糖鎖の直接解析方法およびそれに用いるための固体マトリックス組成物2021

    • Inventor(s)
      比能洋、浦上彰吾
    • Industrial Property Rights Holder
      比能洋、浦上彰吾
    • Industrial Property Rights Type
      特許
    • Filing Date
      2021
    • Related Report
      2021 Annual Research Report
    • Overseas

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Published: 2019-04-18   Modified: 2024-12-25  

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