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Gene module database system for human mentality

Research Project

Project/Area Number 21700233
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeSingle-year Grants
Research Field Sensitivity informatics/Soft computing
Research InstitutionMuroran Institute of Technology

Principal Investigator

OKADA Yoshifumi  Muroran Institute of Technology, 大学院・工学研究科, 助教 (00443177)

Project Period (FY) 2009 – 2010
Project Status Completed (Fiscal Year 2010)
Budget Amount *help
¥3,770,000 (Direct Cost: ¥2,900,000、Indirect Cost: ¥870,000)
Fiscal Year 2010: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2009: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Keywords心理状態 / 遺伝子発現 / モジュール / データベース / 心の状態 / 遺伝子発現データ / 遺伝子モジュール / 疑似クリーク / 飽和集合 / DNAマイクロアレイ / 遺伝子機能解析
Research Abstract

Aiming at assisting analysis of gene expression data for human mentality, this study proposed a novel method for identifying genetic responses (gene modules) specific for each mentality and built a database storing extracted modules and their biological knowledge. This study hereby enabled us to consolidate gene expression data dispersed in multiple public databases and to discover biological useful modules.

Report

(3 results)
  • 2010 Annual Research Report   Final Research Report ( PDF )
  • 2009 Annual Research Report
  • Research Products

    (45 results)

All 2011 2010 2009 Other

All Journal Article (10 results) (of which Peer Reviewed: 10 results) Presentation (33 results) Remarks (2 results)

  • [Journal Article] Novel Gene Analysis Method for Biomarker Mining in DNA Microarray Data2011

    • Author(s)
      Kentaro Fukuta, Tomomasa Nagashima, Takashi Uozumi, Yoshifumi Okada
    • Journal Title

      International Journal of Computer Information Systems and Industrial Management Applications vol.3

      Pages: 256-263

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Audio Classification Based on Closed Itemset Mining Algorithm2011

    • Author(s)
      Yoshifumi Okada, Takahiro Tada, Kentaro Fukuta, Tomomasa Nagashima
    • Journal Title

      International Journal of Computer Information Systems and Industrial Management Applications vol.3

      Pages: 159-164

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] A Novel Gene Analysis Method for Biomarker Mining in DNA Microarray Data2011

    • Author(s)
      Kentaro Fukuta, Tomomasa Nagashima, Takashi Uozumi, Yoshifumi Okada
    • Journal Title

      International Journal of Computer Information Systems and Industrial Management Applications

      Volume: 3 Pages: 256-263

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Audio Classification Based on Closed Itemset Mining2011

    • Author(s)
      Yoshifumi Okada, Takahiro Tada, Kentaro Fukuta, Tomomasa Nagashima
    • Journal Title

      International Journal of Computer Information Systems and Industrial Management Applications

      Volume: 3 Pages: 159-164

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] GEMIND : gene expression module database for human mentality2009

    • Author(s)
      Yoshifumi Okada, Masahiro Sawai
    • Journal Title

      The journal of three dimensional images vol.23, no.3

      Pages: 30-35

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Identification of differentially expressed gene modules between two-class DNA microarray data2009

    • Author(s)
      Yoshifumi Okada, Terufumi Inoue
    • Journal Title

      Bioinformation vol.4, no.4

      Pages: 134-137

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] High-Performance Gene Expression Module Analysis Tool and Its Application to Chemical Toxicity Data2009

    • Author(s)
      Wataru Fujibuchi, Hyeryung Kim, Yoshifumi Okada, Takeaki Taniguchi, Hideko Sone
    • Journal Title

      Methods in Molecular Biology vol.577

      Pages: 55-65

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Identification of differentially expressed gene modules between two-class DNA microarray data2009

    • Author(s)
      Okada, Y., Inoue, T.
    • Journal Title

      Bioinformation 4(4)

      Pages: 134-137

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] High-Performance Gene Expression Module Analysis Tool and Its Application to Chemical Toxicity Data2009

    • Author(s)
      Fujibuchi, W., Kim, H., Okada, Y., Taniguchi, T., Sone, H.
    • Journal Title

      Methods in Molecular Biology 577

      Pages: 55-65

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] GEMIND : gene expression module database for human mentality2009

    • Author(s)
      Okada, Y., Sawai, M.
    • Journal Title

      The journal of three dimensional images 23(3)

      Pages: 30-35

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Presentation] Gene Expression Data Analysis Using Heuristic Attribute Reduction in Rough Set Theory2010

    • Author(s)
      Yasuo Kudo, Yoshifumi Okada
    • Organizer
      SCIS & ISIS 2010
    • Place of Presentation
      岡山
    • Year and Date
      2010-12-12
    • Related Report
      2010 Final Research Report
  • [Presentation] Gene Expression Data Analysis Using Heuristic Attribute Reduction in Rough Set Theory2010

    • Author(s)
      Yasuo Kudo, Yoshifumi Okada
    • Organizer
      SCIS & ISIS 2010
    • Place of Presentation
      Okayama Convention Center(岡山県)
    • Year and Date
      2010-12-12
    • Related Report
      2010 Annual Research Report
  • [Presentation] 遺伝子モジュールを用いた病気のクラス識別2010

    • Author(s)
      井上皓文, 岡田吉史
    • Organizer
      日本感性工学会第3回生命ソフトウェア部会研究会
    • Place of Presentation
      北海道
    • Year and Date
      2010-11-27
    • Related Report
      2010 Final Research Report
  • [Presentation] 飽和集合マイニングに基づく遺伝子発現データ解析2010

    • Author(s)
      大橋克哉、多田貴博、井上皓文、岡田吉史
    • Organizer
      日本感性工学会第3回生命ソフトウェア部会研究会
    • Place of Presentation
      北海道
    • Year and Date
      2010-11-27
    • Related Report
      2010 Final Research Report
  • [Presentation] 飽和集合列挙法を用いた多クラス識別器の開発2010

    • Author(s)
      多田貴博, 長島知正, 岡田吉史
    • Organizer
      日本感性工学会第3回生命ソフトウェア部会研究会
    • Place of Presentation
      北海道
    • Year and Date
      2010-11-27
    • Related Report
      2010 Final Research Report
  • [Presentation] 遺伝子モジュールを用いた病気のクラス識別2010

    • Author(s)
      井上皓文, 岡田吉史
    • Organizer
      日本感性工学会第3回生命ソフトウェア部会研究会
    • Place of Presentation
      公立はこだて未来大学(北海道)
    • Year and Date
      2010-11-27
    • Related Report
      2010 Annual Research Report
  • [Presentation] 飽和集合マイニングに基づく遺伝子発現データ解析2010

    • Author(s)
      大橋克哉、多田貴博、井上皓文、岡田吉史
    • Organizer
      日本感性工学会第3回生命ソフトウェア部会研究会
    • Place of Presentation
      公立はこだて未来大学(北海道)
    • Year and Date
      2010-11-27
    • Related Report
      2010 Annual Research Report
  • [Presentation] 飽和集合列挙法を用いた多クラス識別器の開発2010

    • Author(s)
      多田貴博, 長島知正, 岡田吉史
    • Organizer
      日本感性工学会第3回生命ソフトウェア部会研究会
    • Place of Presentation
      公立はこだて未来大学(北海道)
    • Year and Date
      2010-11-27
    • Related Report
      2010 Annual Research Report
  • [Presentation] Audio classification based on a closed itemset mining algorithm2010

    • Author(s)
      Yoshifumi Okada, Takahiro Tada, Kentarou Fukuta, Tomomasa Nagashima
    • Organizer
      CISIM 2010
    • Place of Presentation
      ポーランド
    • Year and Date
      2010-10-08
    • Related Report
      2010 Final Research Report
  • [Presentation] Gene analysis Framework for a Biomarker Mining2010

    • Author(s)
      Kentaro Fukuta, Tomomasa Nagashima, Takashi Uozumi, Yoshifumi Okada
    • Organizer
      CISIM 2010
    • Place of Presentation
      ポーランド
    • Year and Date
      2010-10-08
    • Related Report
      2010 Final Research Report
  • [Presentation] Audio classification based on a closed itemset mining algorithm2010

    • Author(s)
      Yoshifumi Okada, Takahiro Tada, Kentarou Fukuta, Tomomasa Nagashima
    • Organizer
      CISIM 2010
    • Place of Presentation
      AGH University(ポーランド)
    • Year and Date
      2010-10-08
    • Related Report
      2010 Annual Research Report
  • [Presentation] Gene analysis Framework for a Biomarker Mining2010

    • Author(s)
      Kentaro Fukuta, Tomomasa Nagashima, Takashi Uozumi, Yoshifumi Okada
    • Organizer
      CISIM 2010
    • Place of Presentation
      AGH University(ポーランド)
    • Year and Date
      2010-10-08
    • Related Report
      2010 Annual Research Report
  • [Presentation] A novel biomarker mining method for identifying cancer genetic networks in gene expression data2010

    • Author(s)
      Kentaro Fukuta, Takashi Uozumi, Yoshifumi Okada
    • Organizer
      ICHS 2010
    • Place of Presentation
      京都
    • Year and Date
      2010-09-17
    • Related Report
      2010 Final Research Report
  • [Presentation] A novel biomarker mining method for identifying cancer genetic networks in gene expression data2010

    • Author(s)
      Kentaro Fukuta, Takashi Uozumi, Yoshifumi Okada
    • Organizer
      ICHS 2010
    • Place of Presentation
      Doshisha University(京都)
    • Year and Date
      2010-09-17
    • Related Report
      2010 Annual Research Report
  • [Presentation] LEAF : leave-one-out forward selection method for cancer classification using gene expression data2010

    • Author(s)
      Kentaro Fukuta, Yoshifumi Okada, Tomomasa Nagashima
    • Organizer
      9th IEEE/ACIS
    • Place of Presentation
      山形
    • Year and Date
      2010-08-18
    • Related Report
      2010 Final Research Report
  • [Presentation] LEAF : leave-one-out forward selection method for cancer classification using gene expression data2010

    • Author(s)
      Kentaro Fukuta, Yoshifumi Okada, Tomomasa Nagashima
    • Organizer
      9th IEEE/ACIS
    • Place of Presentation
      Tsukuoka Hotel(山形)
    • Year and Date
      2010-08-18
    • Related Report
      2010 Annual Research Report
  • [Presentation] Rule-based Classification for Audio Data Based on Closed Itemset Mining2010

    • Author(s)
      Takahiro Tada, Nagashima, T., Okada,Y.
    • Organizer
      IMECS 2010
    • Place of Presentation
      香港
    • Year and Date
      2010-03-17
    • Related Report
      2010 Final Research Report 2009 Annual Research Report
  • [Presentation] 飽和集合マイニングに基づくクラス識別法-遺伝子発現データへの適用-2010

    • Author(s)
      吉田恵梨香, 多田貴博, 長島知正, 岡田吉史
    • Organizer
      第42回計測自動制御学会北海道支部学術講演会
    • Place of Presentation
      札幌
    • Year and Date
      2010-02-22
    • Related Report
      2010 Final Research Report
  • [Presentation] F値を用いた遺伝子発現差解析手法とその評価2010

    • Author(s)
      大道一史, 福多賢太郎, 岡田吉史, 長島知正
    • Organizer
      第42回計測自動制御学会北海道支部学術講演会
    • Place of Presentation
      札幌
    • Year and Date
      2010-02-22
    • Related Report
      2010 Final Research Report
  • [Presentation] 飽和集合マイニングに基づくクラス識別法-遺伝子発現デタヘの適用-2010

    • Author(s)
      吉田恵梨香, 多田貴博, 長島知正, 岡田吉史
    • Organizer
      第42回計測自動制御学会北海道支部学術講演会
    • Place of Presentation
      日本(札幌)
    • Year and Date
      2010-02-22
    • Related Report
      2009 Annual Research Report
  • [Presentation] F値を用いた遺伝子発現差解析手法とその評価2010

    • Author(s)
      大道一史, 福多賢太郎, 岡田吉史, 長島知正
    • Organizer
      第42回計測自動制御学会北海道支部学術講演会
    • Place of Presentation
      日本(札幌)
    • Year and Date
      2010-02-22
    • Related Report
      2009 Annual Research Report
  • [Presentation] Discriminative Gene Module Analysis for Two-Class DNA Microarray Data and Its Application to Cancer Datasets2009

    • Author(s)
      Okada, Y., Inoue, T., Nagashima, T.
    • Organizer
      Int.Conf.Humanized Systems
    • Place of Presentation
      韓国
    • Year and Date
      2009-10-30
    • Related Report
      2010 Final Research Report
  • [Presentation] Discriminative Gene Module Analysis for Two-Class DNA Microarray Data and Its Application to Cancer Datasets2009

    • Author(s)
      Okada, Y., Inoue, T., Nagashima, T.
    • Organizer
      Int.Conf.Humanized Systems
    • Place of Presentation
      韓国(ソウル)
    • Year and Date
      2009-10-30
    • Related Report
      2009 Annual Research Report
  • [Presentation] Application of F-Value to Classification Problems with Numerous Numbers of Explanatory Variables2009

    • Author(s)
      Nagashima, T., Okada, Y., Sawai, M.
    • Organizer
      2009 International Symposium on Nonlinear Theory and its Applications
    • Place of Presentation
      札幌
    • Year and Date
      2009-10-18
    • Related Report
      2010 Final Research Report
  • [Presentation] Detection of Differentially Expressed Gene Modules in Human Cancer2009

    • Author(s)
      Inoue, T., Nagashima, T., Okada, Y.
    • Organizer
      2009 International Symposium on Nonlinear Theory and its Applications
    • Place of Presentation
      札幌
    • Year and Date
      2009-10-18
    • Related Report
      2010 Final Research Report
  • [Presentation] Application of F-Value to Classification Problems with Numerous Numbers of Explanatory Variables2009

    • Author(s)
      Nagashima, T., Okada, Y., Sawai, M.
    • Organizer
      2009 International Symposium on Nonlinear Theory and its Applications
    • Place of Presentation
      日本(札幌)
    • Year and Date
      2009-10-18
    • Related Report
      2009 Annual Research Report
  • [Presentation] Detection of Differentially Expressed Gene Modules in Human Cancer2009

    • Author(s)
      Inoue, T., Nagashima, T., Okada, Y.
    • Organizer
      2009 International Symposium on Nonlinear Theory and its Applications
    • Place of Presentation
      日本(札幌)
    • Year and Date
      2009-10-18
    • Related Report
      2009 Annual Research Report
  • [Presentation] CellMontage/SAMURAI2 : Enhanced Gene Expression Similarity Search Tools2009

    • Author(s)
      藤渕航, 岡田吉史, Horton Paul
    • Organizer
      CBRC2009
    • Place of Presentation
      東京
    • Year and Date
      2009-10-04
    • Related Report
      2010 Final Research Report
  • [Presentation] CellMontage/SAMIURAI2 : Enhanced Gene Expression Similarity Search Tools2009

    • Author(s)
      藤渕航, 岡田吉史, Horton Paul
    • Organizer
      CBRC2009
    • Place of Presentation
      日本(東京)
    • Year and Date
      2009-10-04
    • Related Report
      2009 Annual Research Report
  • [Presentation] Extraction of Discriminative Gene Modules between Two-Class DNA Microarray Data and Its Application to Chronic Loneliness Patients2009

    • Author(s)
      Okada, Y., Inoue, T., Nagashima, T.
    • Organizer
      Proc.of 2009 International Conference on Biometrics and Kansei Engineering
    • Place of Presentation
      ポーランド
    • Year and Date
      2009-06-25
    • Related Report
      2010 Final Research Report
  • [Presentation] Applicability of F-value to Classification Problems with a Numerous Number of Explanatory Variables : Toward Classification Problems in Biometric and Kansei Engineering2009

    • Author(s)
      Nagashima, T., Wang, X., Okada, Y., Sawai, M.
    • Organizer
      Proc.of 2009 International Conference on Biometrics and Kansei Engineering
    • Place of Presentation
      ポーランド
    • Year and Date
      2009-06-25
    • Related Report
      2010 Final Research Report
  • [Presentation] Extraction of Discriminative Gene Modules between Two-Class DNA Microarray Data and Its Application to Chronic Loneliness Patients2009

    • Author(s)
      Okada, Y., Inoue, T., Nagashima, T.
    • Organizer
      Proc.of 2009 International Conference on Biometrics and Kansei Engineering
    • Place of Presentation
      ポーランド(チェシン)
    • Year and Date
      2009-06-25
    • Related Report
      2009 Annual Research Report
  • [Presentation] Applicability of F-value to Classification Problems with a Numerous Number of Explanatory Variables : Toward Classification Problems in Biometric and Kansei Engineering2009

    • Author(s)
      Nagashima, T., Wang, X., Okada, Y., Sawai, M.
    • Organizer
      Proc.of 2009 International Conference on Biometrics and Kansei Engineering
    • Place of Presentation
      ポーランド(チェシン)
    • Year and Date
      2009-06-25
    • Related Report
      2009 Annual Research Report
  • [Remarks] ホームページ等

    • Related Report
      2010 Final Research Report
  • [Remarks]

    • URL

      http://cbr13.csse.muroran-it.ac.jp/Gemind

    • Related Report
      2010 Annual Research Report

URL: 

Published: 2009-04-01   Modified: 2016-04-21  

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