Preferences of synonymous codons and translational control during the chloroplast genome evolution
| Project/Area Number |
21770258
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| Research Category |
Grant-in-Aid for Young Scientists (B)
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| Allocation Type | Single-year Grants |
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| Research Field |
Evolutionary biology
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| Research Institution | Nagoya City University |
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Principal Investigator |
NAKAMURA Masayuki Nagoya City University, 大学院・システム自然科学研究科, 研究員 (60322145)
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| Project Period (FY) |
2009 – 2010
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| Project Status |
Completed (Fiscal Year 2010)
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| Budget Amount *help |
¥4,160,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥960,000)
Fiscal Year 2010: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2009: ¥2,470,000 (Direct Cost: ¥1,900,000、Indirect Cost: ¥570,000)
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| Keywords | 葉緑体 / 翻訳 / 同義コドン / 進化 / in vitro翻訳系 / 翻訳効率 / コドン使用頻度 |
|---|
| Research Abstract |
In chloroplasts, the translation efficiencies of synonymous codons are not always correlated with their codon usage. Tobacco chloroplast rps2 mRNA contains many codons having efficient translation activity, whereas rps16 mRNA has a lot of inefficient codons. To elucidate whether the codon preference affect the translation efficiencies of these mRNAs, I analyzed the translation efficiencies of rps2 and rps16 mRNAs using the in vitro translation system from tobacco chloroplasts. I found that (1) 5'UTR of rps16 mRNA has less translation activity, (2) protein coding region of rps16 mRNA was translated about 3-times faster than that of rps2 mRNA, and (3) codon substitutions increased that translation efficiency of protein coding region of rps16 mRNA.
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Report
(3 results)
Research Products
(36 results)
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[Journal Article] An organellar maturase associates with multiple group II introns.2010
Author(s)
Zoschke, R., Nakamura, M., Liere, K., Sugiura, M. Borner, T., Schmitz-Linneweber, C.
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Journal Title
Proc. Natl. Acad. Sci. USA. 107
Pages: 3245-3250
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Peer Reviewed
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[Presentation] MatK or why keep a chloroplast-encoded splicing factor?2010
Author(s)
Zoschke, R., Neumann, L., Nakamura, M., Liere, K., Sugiura, M., Borner, T., Schmitz-Linneweber, C.
Organizer
XIth International Colloquium on Endocytiobiology and Symbiosis
Place of Presentation
Tromsφ
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[Presentation] MatK or why keep a chloroplast-encoded splicing factor?2010
Author(s)
Zoschke, R., Neumann, L., Nakamura, M., Liere, K., Sugiura, M., Borner, T. Schmitz-Linneweber, C.
Organizer
XIth International Colloquium on Endocytobiology and Symbiosis
Place of Presentation
トロムソ大学(ノルウェー)
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[Presentation] An organellar maturase associates with multiple group II introns2009
Author(s)
Zoschke, R., Nakamura, M., Liere, K., Sugiura, M., Borner, T., Schmitz-Linneweber, C.
Organizer
LEOPOLDINA-SYMPOSIUM
Place of Presentation
Berlin
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