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Elucidation of the role of aromatic amino acid residues in crystalline chitin hydrolysis and development to the mechanism of a-chitin hydrolysis

Research Project

Project/Area Number 24580104
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Applied microbiology
Research InstitutionNiigata University

Principal Investigator

WATANABE TAKESHI  新潟大学, 自然科学系, 教授 (10201203)

Co-Investigator(Renkei-kenkyūsha) IGARASHI Kiyohiko  東京大学, 大学院農学生命科学研究科, 准教授 (80345181)
SUZUKI Kazushi  新潟大学, 自然科学系, 准教授 (00444183)
SUGIMOTO Hayuki  新潟大学, 自然科学系, 助教 (60529527)
Project Period (FY) 2012-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥5,460,000 (Direct Cost: ¥4,200,000、Indirect Cost: ¥1,260,000)
Fiscal Year 2014: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2013: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2012: ¥3,120,000 (Direct Cost: ¥2,400,000、Indirect Cost: ¥720,000)
Keywordsキチナーゼ / 結晶性キチン分解 / Serratia marcescens / 高速原子間力顕微鏡 / 芳香族アミノ酸残基 / 結晶性キチン
Outline of Final Research Achievements

Chitin is a crystalline and rigid structural polysaccharide present in a variety of organisms. Elucidation of the mechanism underlying in the enzymatic degradation of crystalline chitin is very important not only from enzymological and biological view points, but also for utilization of biomass resources. In this study, critical roles of the aromatic amino acid residues, which are present on the surface of chitinase molecule and inside of its catalytic cleft, in processive hydrolysis of crystalline chitin was demonstrated.

Report

(4 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Research-status Report
  • 2012 Research-status Report
  • Research Products

    (29 results)

All 2015 2014 2013 2012 Other

All Journal Article (10 results) (of which Peer Reviewed: 10 results,  Acknowledgement Compliant: 2 results) Presentation (17 results) (of which Invited: 2 results) Remarks (2 results)

  • [Journal Article] Construction and basic characterization of deletion mutants of the genes involved in chitin utilization by Serratia marcescens 2170.2015

    • Author(s)
      Takanao S, Honma S, Miura T, Ogawa C, Sugimoto H, Suzuki K, Watanabe T.
    • Journal Title

      Biosci Biotechnol Biochem.

      Volume: 78 Issue: 3 Pages: 524-32

    • DOI

      10.1080/09168451.2014.882755

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Two-way traffic of glycoside hydrolase family 18 processive chitinases on crystalline chitin2014

    • Author(s)
      Igarashi, K., Uchihashi, T., Uchiyama, T., Sugimoto, H., Wada, M., Suzuki, K., Sakuda, S., Ando, T., Watanabe, T., and Samejima, M.
    • Journal Title

      Nature Commun.

      Volume: 5 Issue: 1 Pages: 3975-3975

    • DOI

      10.1038/ncomms4975

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Serratia marcescensのキチン分解利用機構2014

    • Author(s)
      渡邉剛志、杉本華幸、鈴木一史
    • Journal Title

      キチン・キトサン研究

      Volume: 20 Pages: 4-15

    • NAID

      40020056084

    • Related Report
      2014 Annual Research Report 2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] キチナーゼによる結晶性キチンのプロセッシブ(連続的)な分解機構の解明2014

    • Author(s)
      杉本華幸、五十嵐圭日子、内橋貴之、鈴木一史、渡邉剛志
    • Journal Title

      応用糖質科学

      Volume: 4 Pages: 107-112

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Construction and basic characterization of deletion mutants of the genes involved in chitin utilization by Serratia marcescens 2170.2014

    • Author(s)
      S. Takano, H. Syouta, T. Miura, C. Ogawa, H. Sugimoto, K. Suzuki, and T. Watanabe
    • Journal Title

      Biosci. Biotechnol. Biochem.

      Volume: 78

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Observation of the controlled assembly of preclick components in the in situ click chemistry generation of a chitinase inhibitor2013

    • Author(s)
      Hirose T, Maita N, Taniguchi H, Sharpless KB, Omura S, Sunazuka T
    • Journal Title

      Proc.Natl.Acad.Sci. USA.

      Volume: 110 Issue: 40 Pages: 15892-15897

    • DOI

      10.1073/pnas.1315049110

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Involvement of Gln679, in addition to Trp687, in chitin-binding activity of the chitin-bindingdomain of chitinase A1 from Bacillus circulans WL-12.2013

    • Author(s)
      M. Hara, H. Sugimoto, M. Uemura, K. Akagi, K. Suzuki, T. Ikegami, and T. Watanabe
    • Journal Title

      J. Biochem.

      Volume: 154 Issue: 2 Pages: 185-193

    • DOI

      10.1093/jb/mvt043

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Regulation of Chitinase Production by the 5'-Untranslated Region of the <i>ybfM</i> in <i>Serratia marcescens</i> 21702012

    • Author(s)
      T. Toratani, K. Suzuki, M. Shimizu, H. Sugimoto, and T. Watanabe
    • Journal Title

      Bioscience, Biotechnology, and Biochemistry

      Volume: 76 Issue: 10 Pages: 1920-1924

    • DOI

      10.1271/bbb.120403

    • NAID

      130004054013

    • ISSN
      0916-8451, 1347-6947
    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Serratia marcescens induces apoptotic cell death in host immune cells via a lipopolysaccharide- and flagella-dependent mechanism2012

    • Author(s)
      Kenichi Ishii, et al.
    • Journal Title

      Journal of Biological Chemistry

      Volume: 287 Issue: 43 Pages: 36582

    • DOI

      10.1074/jbc.m112.399667

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] One-pot chemo-enzymatic route to chitoheptaose via specific transglycosylation of chitopentaose-oxazoline on chitinase-template2012

    • Author(s)
      Naoki Yoshida, Tomonari Tanaka, Masato Noguchi, Atsushi Kobayashi, Kumiko Ishikura, Tatsuya Ikenuma, Hiromu Seno, Takeshi Watanabe, Michinari Kohri, and Shin-ichiro Shoda
    • Journal Title

      Chemistry Letters

      Volume: 41 Issue: 7 Pages: 689-690

    • DOI

      10.1246/cl.2012.689

    • NAID

      10030786354

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Presentation] Serratia marcescens 2170 のキチン分解利用機構の解析:ChiD,Ctbの発現系構築とCBP21欠損株の構築2015

    • Author(s)
      今井裕也、五十嵐瑞礎、三浦拓馬、桜井大地、杉本華幸、鈴木一史、渡邉剛志
    • Organizer
      日本農芸化学会2014年度大会
    • Place of Presentation
      岡山大学
    • Year and Date
      2015-03-26 – 2015-03-29
    • Related Report
      2014 Annual Research Report
  • [Presentation] Chitin degradation and utilization system of Serratia marcescens 2170. ---Role and regulation of the chiPQ-ctb operon---2014

    • Author(s)
      T. Watanabe, T. Miura, H. Minami, C. Ogawa, S. Honma, H. Sugimoto, and K. Suzuki.
    • Organizer
      MIE BIOFORUM 2014 -Lignocellulose Degradation and Biorefine
    • Place of Presentation
      Shima, Mie, Japan
    • Year and Date
      2014-11-18 – 2014-11-21
    • Related Report
      2014 Annual Research Report
  • [Presentation] 細菌のキチナーゼとキチン分解利用機構2014

    • Author(s)
      渡邉剛志、杉本華幸、鈴木一史
    • Organizer
      第28回キチンキトサンシンンポジウム
    • Place of Presentation
      順天堂大学(東京都文京区)
    • Year and Date
      2014-08-07 – 2014-08-08
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Serratia marcescens 2170 のキチン分解利用機構 -chiPQ-ctbオペロンの機能解 析-2014

    • Author(s)
      三浦拓馬、本間祥太、杉本華幸、鈴木一史、渡邉剛志
    • Organizer
      第28回キチンキトサンシンンポジウム
    • Place of Presentation
      順天堂大学(東京都文京区)
    • Year and Date
      2014-08-07 – 2014-08-08
    • Related Report
      2014 Annual Research Report
  • [Presentation] Serratia marcescensにおけるキチン分解産物の取り込みとsmall RNAによるキチナーゼ発現制御.2014

    • Author(s)
      鈴木一史、小川知佐奈、 南晴香、 杉本華幸、渡邉剛志
    • Organizer
      第28回キチンキトサンシンンポジウム
    • Place of Presentation
      順天堂大学(東京都文京区)
    • Year and Date
      2014-08-07 – 2014-08-08
    • Related Report
      2014 Annual Research Report
  • [Presentation] small RNAを介したSerratia marcescensキチン分解利用系制御へのNagC及びChbRの関与2014

    • Author(s)
      鈴木一史、 小川知佐奈、 南晴香、 髙野慎也、 杉本華幸、渡邉剛志
    • Organizer
      日本農芸化学会2014年度大会
    • Place of Presentation
      明治大学
    • Related Report
      2013 Research-status Report
  • [Presentation] Serratia marcescens 2170のキチン分解利用機構ーchiPQ-ctbオペロンの機能ー2014

    • Author(s)
      三浦拓馬、今井裕也、小川知佐奈、 鈴木一史、 杉本華幸、渡邉剛志
    • Organizer
      日本農芸化学会2014年度大会
    • Place of Presentation
      明治大学
    • Related Report
      2013 Research-status Report
  • [Presentation] Chitin degradation and utilization system of Serratia marcescens 2170.2013

    • Author(s)
      T. Watanabe, H. Sugimoto, and K. Suzuki
    • Organizer
      10th Asia-Pacific Chitin and Chitosan Symposium / 27th Japanese Chitin and Chitosan Symposium
    • Place of Presentation
      米子コンベンションセンター
    • Related Report
      2013 Research-status Report
    • Invited
  • [Presentation] Studies on mechanism of crystalline chitin hydrolysis by Serratia marcescens chitinase B using high-speed atomic force microscopy.2013

    • Author(s)
      Sugimoto, K. Nakamura, Y. Nishino, A. Fujinuma, H. Watanabe, T. Uchihashi, T. Ando, K. Igarashi, M. Wada, M. Samejima, K. Suzuki, and T. Watanabe
    • Organizer
      10th Asia-Pacific Chitin and Chitosan Symposium / 27th Japanese Chitin and Chitosan Symposium.
    • Place of Presentation
      米子コンベンションセンター
    • Related Report
      2013 Research-status Report
  • [Presentation] Regulation of chitin degradation and utilization system by ChiX small RNA in Serratia marcescens.2013

    • Author(s)
      K. Suzuki, N. Sasaki, C. Ogawa, M. Shimizu, S. Takano, H. Sugimoto, and T. Watanabe
    • Organizer
      10th Asia-Pacific Chitin and Chitosan Symposium / 27th Japanese Chitin and Chitosan Symposium
    • Place of Presentation
      米子コンベンションセンター
    • Related Report
      2013 Research-status Report
  • [Presentation] Coordinate regulation of the chitin degradation and utilization system by small RNA in Serratia marcescens.2013

    • Author(s)
      K. Suzuki, M. Shimizu, C. Ogawa, N. Sasaki, S. Takano, H. Sugimoto, and T. Watanabe
    • Organizer
      American Society for Microbiology 113th General Meeting
    • Place of Presentation
      Colorado Convention Center, Denver, Colorado.
    • Related Report
      2013 Research-status Report
  • [Presentation] 構造一体型キチナーゼ Serratia marcescens キチ ナーゼBの結晶性キチン分解機構の解明とフレキシブ ル型キチナーゼとの比較解析2013

    • Author(s)
      杉本 華幸、中村 啓 太、西野 裕史、藤沼 晶 子、橋詰 義夫、丸屋 良 輔、五十嵐 圭日子、鮫島 正浩、渡辺 大輝、内橋 貴 之、安藤 敏夫、鈴木 一 史、渡邉 剛志
    • Organizer
      2013年日本農芸化学会大会
    • Place of Presentation
      東北大学
    • Related Report
      2012 Research-status Report
  • [Presentation] Serratia marcescensキチナーゼBの特徴と結晶性キチン分解.2012

    • Author(s)
      藤沼晶子、丸屋良輔、杉本華幸、中村啓太、橋詰義夫、五十嵐圭日子、鮫島正浩、鈴木一史、渡邉剛志
    • Organizer
      第26回キチンキトサンシンンポジウム
    • Place of Presentation
      北海道大学
    • Related Report
      2012 Research-status Report
  • [Presentation] Serratia marcescens キチナーゼBの結晶性キチン分解機構の解明.2012

    • Author(s)
      杉本華幸、藤沼晶子、中村啓太、西野裕史、五十嵐圭日子、鮫島正浩、鈴木一史、渡邉剛志
    • Organizer
      日本農芸化学会関東支部2012年度大会.
    • Place of Presentation
      新潟薬科大学
    • Related Report
      2012 Research-status Report
  • [Presentation] モジュール型キチナーゼによる結晶性キチン分解機構.2012

    • Author(s)
      橋詰義夫、丸屋良輔、杉本華幸、鈴木一史、渡邉剛志
    • Organizer
      日本農芸化学会関東支部2012年度大会.
    • Place of Presentation
      新潟薬科大学
    • Related Report
      2012 Research-status Report
  • [Presentation] 高速原子間力顕微鏡観察を用いたSerratia marcescens キチナーゼBの結晶性キチン分解機構の解明.2012

    • Author(s)
      杉本華幸、藤沼晶子、中村啓太、西野裕史、五十嵐圭日子、鮫島正浩、渡辺大輝、内橋貴之、安藤敏夫、鈴木一史、渡邉剛志
    • Organizer
      第85回日本生化学会大会
    • Place of Presentation
      福岡国際会議場
    • Related Report
      2012 Research-status Report
  • [Presentation] MicM sRNAによるSerratia marcescensキチン分解利用系の制御.2012

    • Author(s)
      鈴木一史、清水麻里、佐々木直美、小川知佐奈、杉本華幸、渡邉剛志
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      福岡国際会議場
    • Related Report
      2012 Research-status Report
  • [Remarks] 新潟大学農学部応用生物化学科 応用微生物学研究室

    • Related Report
      2013 Research-status Report
  • [Remarks] 新潟大学農学部応用生物化学科 応用微生物学研究室

    • URL

      http://www.agr.niigata-u.ac.jp/~ksuzuki/ApplMicro/Welcome.html

    • Related Report
      2012 Research-status Report

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Published: 2013-05-31   Modified: 2019-07-29  

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