科学データのための先進的計算手法

2009 年度 研究成果報告書

• 研究課題/領域番号: 19300045
• 研究種目: 基盤研究(B)
• 配分区分: 補助金
• 応募区分: 一般
• 研究分野: 知能情報学
• 研究機関: 北陸先端科学技術大学院大学
• 研究代表者: ホー ツー・バオ 北陸先端科学技術大学院大学, 知識科学研究科, 教授 (60301199)
• 研究分担者: 高林 克日己 千葉大学, 医学部附属病院, 教授 (90188079) ; 河崎 さおり 北陸先端科学技術大学院大学, 知識科学研究科, 助教 (40377437) ; DAM Hieu Chi 北陸先端科学技術大学院大学, 知識科学研究科, 講師 (70397230)
• 研究期間 (年度): 2007 – 2009
• キーワード: データマイニング / 構造化データ / 知識発見 / 科学データ

研究概要

本プロジェクトでは、科学データの構造に付随する複雑性がもたらす計算上の困難な問題に対処するための技術的な基盤を確立し、効率的で効果的な機械学習/データマイニング手法、特に(1)カーネル手法、(2)構造化予測のための準教師付学習手法の開発に取組み、開発した手法を医学、バイオインフォマティクス、材料化学の各分野に適用する中で、これらの手法の有効性や、各分野の科学的発見に貢献する可能性を示した。

研究成果

• [雑誌論文] MicroRNA expression profiles for classification and analysis of tumor samples (2011)
  • 著者名/発表者名: Tran, D.H., Ho, T.B., Pham, T.H., Satou, K.
  • 雑誌名: IEICE Trans.Information Systems (accepted).
  • 査読あり
• [雑誌論文] Privacy Preserving Frequency Mining in 2-Part Fully Distributed Setting (2010)
  • 著者名/発表者名: Luong, T.D., Ho, T.B.
  • 雑誌名: IEICE Trans.Information Systems Vol.E93-D, No.10 ページ: 2701-2708
  • 査読あり
• [雑誌論文] Enhancing Privacy in Distributed Data Clustering (2010)
  • 著者名/発表者名: Luong, T.D., Ho, T.B.
  • 雑誌名: Journal of Computer Science and Cybernetics Vol.26, No.2 ページ: 1-15
  • 査読あり
• [雑誌論文] Sequence-dependent histone variant positioning signatures (2010)
  • 著者名/発表者名: Le, N.T., Ho, T.B., Ho, B.H.
  • 雑誌名: BMC Genomics Vol.11(Suppl 4) ページ: 1-9
  • 査読あり
• [雑誌論文] Computational Discovery of miR-TF Regulatory Modules in Human Genome (2010)
  • 著者名/発表者名: Tran, D.H., Satou, K., Ho, T.B., Pham, T.H.
  • 雑誌名: Bioinformation 4(8) ページ: 371-377
  • 査読あり
• [雑誌論文] Ab initio study of the polymerisation of cyclopentasilane (2010)
  • 著者名/発表者名: Sugiyama, A., Shimoda, T., Dam, H.C.
  • 雑誌名: Molecular Physics 108 ページ: 1649-1653
  • 査読あり
• [雑誌論文] First principles study of the physisorption of hydrogen molecule on graphene and carbon nanotube surfaces adhered by Pt atom (2010)
  • 著者名/発表者名: Pham, T.L., Phan, V.D., Sugiyama, A., Shimoda, T., Dam, H.C.
  • 雑誌名: Journal of Computational Materials Science 49(1) ページ: S15-S20
  • 査読あり
• [雑誌論文] First principles study of the thermally induced polymerization of cyclopentasilane (2010)
  • 著者名/発表者名: Phan V.D., Pham T.L., A.Sugiyama, T.Shimoda, Dam H.C.
  • 雑誌名: Computational Materials Science 49(1) ページ: S21-S24
  • 査読あり
• [雑誌論文] Ab initio study of the polymerization of cyclopentasilane (2010)
  • 著者名/発表者名: Sugiyama, A., Shimoda, T., Dam H.C.
  • 雑誌名: Molecular Physics. (accepted)
  • 査読あり
• [雑誌論文] Characterizing nucleosome dynamics from genomic and epigenetic information using rule induction learning (2009)
  • 著者名/発表者名: Le, N.T., Ho, T.B., Tran, D.H.
  • 雑誌名: BMC Genomics 10(Suppl.3) ページ: S27
  • 査読あり
• [雑誌論文] Augmented Mutual Information for Multiword Extraction (2009)
  • 著者名/発表者名: Zhang, W., Yoshida, T., Ho, T.B., Tang, X.
  • 雑誌名: International Journal of Innovative Computing, Information and Control Vol.5, No.2 ページ: 543-554
  • 査読あり
• [雑誌論文] Improving effectiveness of mutual information for substantial multiword expression extraction (2009)
  • 著者名/発表者名: Zhang, W., Yoshida, T., Tang, X., Ho, T.B.
  • 雑誌名: Expert Systems with Applications (Elsevier) Vol.36, No.8 ページ: 10919-10930
  • 査読あり
• [雑誌論文] Substrate-mediated interactions of Pt atoms adsorbed on single-wall carbon nanotubes : Density functional calculations (2009)
  • 著者名/発表者名: Dam H.C., Nguyen T.C., Sugiyama, A., Ozaki, T., Fujiwara, A., Mitani, T., Okada, S.
  • 雑誌名: Physical Review B 79(11) ページ: 115426
  • 査読あり
• [雑誌論文] A systematic study of influence of ligand substitutions on the electronic structure and magnetic properties of Mn4 single-molecule magnets (2009)
  • 著者名/発表者名: Nguyen, A.T., Katayama, S., Dam, H.C.
  • 雑誌名: Physical Chemistry Chemical Physics 11 ページ: 717-729
  • 査読あり
• [雑誌論文] Density functional study of Pt4 clusters adsorbed on a carbonnanotube support (2009)
  • 著者名/発表者名: Nguyen T.C., A.Sugiyama, A.Fujiwara, T.Mitani, Dam H.C.
  • 雑誌名: Physical Review B 79(23) ページ: 235417
  • 査読あり
• [雑誌論文] Effects of Carbon supports on Pt nano-cluster catalyst (2009)
  • 著者名/発表者名: Nguyen, T.C., Fujiwara, A., Mitani, T., Dam, H.C.
  • 雑誌名: Computational Materials Science 44 ページ: 163-166
  • 査読あり
• [雑誌論文] An Efficient Kernel Matrix Evaluation Measure (2008)
  • 著者名/発表者名: Nguyen, C.H., Ho, T.B.
  • 雑誌名: Pattern Recognition (Elsevier) 41(11) ページ: 3366-3372
  • 査読あり
• [雑誌論文] An Integrative Domain-Based Approach to Predicting Protein-Protein Interactions (2008)
  • 著者名/発表者名: Nguyen, T.P., Ho, T.B.
  • 雑誌名: Journal of Bioinformatics and Computational Biology (Imperial College Press.) Vol.6, Issue 6 ページ: 1115-1132
  • 査読あり
• [雑誌論文] Finding microRNA regulatory modules in human genome using rule induction (2008)
  • 著者名/発表者名: Tran, D.H., Satou, K., Ho, T.B.
  • 雑誌名: Journal BMC Bioinfor matics (MedCentral.) Vol.9, No.Supp 11 ページ: 1-10
  • 査読あり
• [雑誌論文] Prediction of human microRNA hairpin using only positive sample learning (2008)
  • 著者名/発表者名: Tran, D.H., Pham, T.H., Satou, K., Ho, T.B.
  • 雑誌名: Journal of Biomedical Science and Engineering (JBiSE)(Scientific Research Publishing.) Vol.1, Issue 2 ページ: 141-146
  • 査読あり
• [雑誌論文] Vietnamese Language Processing : Issues and Challenges (2008)
  • 著者名/発表者名: Ho, T.B.
  • 雑誌名: Special Issue in Journal of Science, Natural Sciences and Technology (Vietnam National University-Hanoi Publishers) Vol.24, N3S ページ: 10-16
  • 査読あり
• [雑誌論文] The role of ligands in controlling the electronic structureand magnetic properties of Mn4 single-molecule magnets (2008)
  • 著者名/発表者名: Nguyen, A.T., Katayama, S., Dam, H.C.
  • 雑誌名: Computational Materials Science 44 ページ: 111-116
  • 査読あり
• [雑誌論文] Issues and First Phase Development of the English-Vietnamese Translation System EVSMT1.0 (2008)
  • 著者名/発表者名: Ho, T.B., Pham, N.K., Ha, T.L., Nguyen, P.T.
  • 雑誌名: Special Issue in Journal of Science, Natural Sciences and Technology (Vietnam National University-Hanoi Publishers) Vol.24, N3S ページ: 59-66
  • 査読あり
• [雑誌論文] Integration of learning methods, medical literature and expert inspection in medical data mining (2007)
  • 著者名/発表者名: Ho, T.B., Kawasaki, S., Takabayashi, K., Nguyen, C.H.
  • 雑誌名: IEICE Trans.Information and Systems Vol.E90-D, No.10 ページ: 1574-1581
  • 査読あり
• [雑誌論文] Exploiting Temporal Relations in Mining Hepatitis Data (2007)
  • 著者名/発表者名: Ho, T.B., Nguyen, C.H., Kawasaki, S., Le,S.Q., Takabayashi, K.
  • 雑誌名: Journal of New Generation Computing (Ohmsha, Ltd.and Springer-Verlag) Vol.25, No.3 ページ: 247-262
  • 査読あり
• [雑誌論文] Decision making under uncertainty with fuzzy targets (2007)
  • 著者名/発表者名: Huynh, V.N., Nakamori, Y., M. Ryoke, Ho, T.B.
  • 雑誌名: Fuzzy Optimization and Decision Making (Springer) Volume 6, Issue 3 ページ: 255-278
  • 査読あり
• [雑誌論文] A hyper-heuristic for descriptive rule induction (2007)
  • 著者名/発表者名: Pham, T.H., Ho, T.B.
  • 雑誌名: International Journal of Data Warehousing and Mining Vol.3, No.1 ページ: 54-66
  • 査読あり
• [雑誌論文] An Agent-Based Approach to Solve Dynamic Meeting Scheduling Problems with Preference (2007)
  • 著者名/発表者名: Ben Hassine, A., Ho, T.B.
  • 雑誌名: International Journal of Engineering Applications of Artificial Intelligence (Elsevier Publishers) Volume 20, Issue 6 ページ: 857-873
  • 査読あり
• [学会発表] Simulation-based Data Mining Solution to the Structure of Water Surrounding Proteins. (2011)
  • 著者名/発表者名: Dam, H.C., Ho, T.B., Sugiyama, A.
  • 学会等名: International Join Conference on Artificial Intelligence (IJCAI-2011)
  • 発表場所: Barcelona, Spain.
  • 年月日: 20110702-20110716
• [学会発表] Mining parallel documents across Web sites (2010)
  • 著者名/発表者名: Pham, N.K., Ho, T.B.
  • 学会等名: The Sixth Asia Information Retrieval Societies Conference AIRS 2010
  • 発表場所: Taipei, Taiwan.
  • 年月日: 20101201-20111203
• [学会発表] Discovering Relationship between Hepatitis C Virus NS5A Protein and Interferon/Ribavirin Therapy (2010)
  • 著者名/発表者名: Kawasaki, S., Ho, T.B., Kanda, T., Yokosuka, O., Takabayashi, K., Le, T.N.
  • 学会等名: International Conference on Knowledge, Information and Creativity Support Systems (Best paper award).
  • 発表場所: Chiangmai, Thailand
  • 年月日: 20101125-20101127
• [学会発表] Quantitatively assessing the effect of regulatory factors on nucleosome dynamics (2010)
  • 著者名/発表者名: Ho, B.H., Le, N.T., Ho, T.B.
  • 学会等名: IEEE-RIVF International Conference on Computing and Communication Technologies
  • 発表場所: Hanoi, Vietnam.
  • 年月日: 20101101-20101104
• [学会発表] Support Vector Machine Study for Dynamical Water Classification Problem in Biosystems (2009)
  • 著者名/発表者名: Sugiyama, A., Mizukami, T., Dam, H.C., Ho, T.B.
  • 学会等名: International Conference on Knowledge, Information and Creativity Support Systems (KICSS 2009)(7-16)
  • 発表場所: Seoul, Korea
  • 年月日: 20091125-20091128
• [学会発表] Towards service-oriented knowledge discovery in biomedicine research (2009)
  • 著者名/発表者名: Ho, T.B., Takabayashi, K., Pham, T.H., Nguyen, T.P., Kawasaki, S., Tran, D.H.
  • 学会等名: International Workshop on Third Generation Data Mining, ECML/PKDD 2009 (100-113)
  • 発表場所: Bled, Slovenia
  • 年月日: 20090907-20090911
• [学会発表] An Empirical Study of Vietnamese Noun Phrase Chunking with Discriminative Sequence Models (2009)
  • 著者名/発表者名: Nguyen, L.M., Nguyen, H.T., Nguyen, P.T., Ho, T.B., Shimazu, A.
  • 学会等名: 7th Workshop on Asian Language Resources at 47th Annual Meeting of the Association for Computational Linguistics, ACL-IJCNLP (9-16)
  • 発表場所: Singapore, Singapore
  • 年月日: 20090802-20090807
• [学会発表] Privacy preserving EM-based Clustering (2009)
  • 著者名/発表者名: Luong, T.D., Ho, T.B.
  • 学会等名: IEEE RIVF International Conference on Computing and Communication Technologies (RIVF09, 111-117, IEEE Press.)
  • 発表場所: Da Nang, Vietnam
  • 年月日: 20090713-20090717
• [学会発表] A computational method for classifying and analyzing tumor samples using microRNA expression profiles (2008)
  • 著者名/発表者名: Tran, D.H., Ho, T.B., Satou, K., Pham, T.H.
  • 学会等名: International Conference on Knowledge, Information and Creativity Support Systems (KICSS 2008)(120-127)(Student Best Paper Award).
  • 発表場所: Hanoi, Vietnam
  • 年月日: 20081222-20081223
• [学会発表] A Tree-to-String Phrase-based Model for Statistical Machine Translation (2008)
  • 著者名/発表者名: Nguyen, P.T., Shimazu, A., Ho, T.B., Nguyen, L.M., Nguyen, V.V.
  • 学会等名: Twelfth Conference on Computational Natural Language Learning (143-150)
  • 発表場所: Manchester, U.K.
  • 年月日: 20080816-20080817
• [学会発表] Simple but effective methods of combining kernels for the prediction problem in biology (2008)
  • 著者名/発表者名: Tanabe, H., Ho, T.B., Nguyen, C.H., Kawasaki, S.
  • 学会等名: IEEE RIVF International Conference on Computing and Communication Technologies (RIVF 08,IEEE Press, 71-78)
  • 発表場所: Ho Chi Minh City,Vietnam
  • 年月日: 20080713-20080717
• [学会発表] Estimating Quality of Support Vector Machines Learning Under Probabilistic and Interval Uncertainty : Algorithms and Computational Complexity (2008)
  • 著者名/発表者名: Nguyen, C.H., Ho, T.B., Kreinovich, V.
  • 学会等名: International Workshop on Interval/Probabilistic Uncertainty and Non-Classical Logics (UncLog'08)(Advances in Soft Computing 46, Springer, 57-69)
  • 発表場所: Kanazawa, Japan
  • 年月日: 20080325-20080328
• [学会発表] Prediction of Histone Modifications in DNA sequences (2007)
  • 著者名/発表者名: Pham, T.H., Ho, T.B., Tran, D.H., Satou, K.
  • 学会等名: IEEE 7th International Symposium on Bioinformatics & Bioengineering (IEEE BIBE 2007)(959-966)
  • 発表場所: Cambridge-Boston, U.S.A.
  • 年月日: 20071014-20071017
• [学会発表] Temporal Abstraction and Data Mining with Visualization of Laboratory Data (2007)
  • 著者名/発表者名: Takabayashi, K., Ho, T.B., Yokoi, H., Nguyen, T.D., Kawasaki, S., Le, S.Q., Suzuki, T., Yokosuka, O.
  • 学会等名: Medinfo 2007 Congress (IOI Press, 1304-1308)
  • 発表場所: Brisbane, Australia
  • 年月日: 20070820-20070824
• [学会発表] Combining Domain Fusions and Domain-Domain Interactions to Predict Protein-Protein Interactions (2007)
  • 著者名/発表者名: Nguyen, T.P., Ho, T.B.
  • 学会等名: Workshop on Data Mining in Bioinformatics BIOKDD07 (13th International Conference on Knowledge Discovery and Data Mining ACM SIGKDD 2007, 27-34)
  • 発表場所: San Jose, U.S.A.
  • 年月日: 20070812-20070816
• [図書] Knowledge Technology and Science (Knowledge Discovery (Chapter 4))(Y.Nakamori (Ed.)) (2011)
  • 著者名/発表者名: Ho, T.B.
  • 総ページ数: 57-81
  • 出版者: CRC Press and Taylor & Francis
• [図書] Data Mining : Medical, Health, Social and Biological Applications (Mining multiple biological data for reconstructing signal transduction networks)(D.Holmes (Ed.)) (2011)
  • 著者名/発表者名: Nguyen, T.P., Ho, T.B.
  • 出版者: Springer (to appear).
• [図書] Advances in Data Warehousing and Mining (Study of protein-protein interactions from multiple data sources)(David Taniar (Ed.)) (2007)
  • 著者名/発表者名: Ho, T.B., Nguyen, T.P., Tran, T.N.
  • 総ページ数: 280-307
  • 出版者: IGC Publishers
• [図書] Handbook of Granular Computing (Rough Document Clustering and the Internet)(Pedrycz, Skowron, Kreinovich (Eds.)) (2007)
  • 著者名/発表者名: Nguyen, H.S., Ho, T.B.
  • 総ページ数: 987-1004
  • 出版者: John Wiley & Sons.
• [図書] In Selected Contributions in Data Analysis and Classification (Finding Rules in Data)(P.Brito, P.Ber-trand, G.Cucumel, F.De Carvalho (Eds.)) (2007)
  • 著者名/発表者名: Ho, T.B.
  • 総ページ数: 387-396
  • 出版者: Springer