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2019 年度 実施状況報告書

Molecular mechanism of the pathogenic protein interaction at the C-terminus of amino acid transporter b0,+AT/SLC7A9 in Japanese-type cystinuria

研究課題

研究課題/領域番号 19K07373
研究機関奈良県立医科大学

研究代表者

Wiriyasermkul Pattama  奈良県立医科大学, 医学部, 助教 (80825836)

研究分担者 コンプラシャ ポーンパン  奈良県立医科大学, 医学部, 助教 (70817767)
研究期間 (年度) 2019-04-01 – 2022-03-31
キーワードTransporter / Cystinuria / Cystine / Amino acids / SLC7 / Kidney disease
研究実績の概要

P482L is a mutation on the amino acid transporter b0,+AT (SLC7A9). This pathogenic mutation causes Japanese-type cystinuria. b0,+AT forms heterodimeric complex with a regulatory protein called rBAT (SLC3A1). To establish and apply multiple analysis system to determine P482L pathogenic mechanism, I planned to purify both wild-type b0,+AT and the P482L mutant along with their heterodimeric partner rBAT. I applied serum-free cell suspension culture system for the large-scale protein production. The transfection method and cell culturing condition were optimized. cDNAs of rBAT-b0,+AT and P482L mutant were cloned and the sequences were confirmed. The cDNA clones were transfected into suspension cells. The results showed that all proteins were well expressed. Protein purification was performed by the method which we successfully established and applied to purify another member of heterodimeric amino acid transporter (HAT) family. With this method, high yield of membrane proteins can be obtained. Currently, we have succeeded to purified all proteins and have been continuedly producing them in a large scale for adequate protein materials. The purified proteins will be used in all analysis.

Determination of P482L pathogenic mechanism will be examined by using multiple analytical assays. Optimization of analytical methods are well progressed. The functional study of the purified the HAT protein provides us not only the purification method but also good tips on analytical assays.

現在までの達成度 (区分)
現在までの達成度 (区分)

2: おおむね順調に進展している

理由

In overall, the research has exceeding progress. The steps of protein production and optimization of analytical systems are proceeded faster than the original plan. This is due to the success of structural and functional study of another member of heterodimeric amino acid transporter (HAT) family. The HAT member shares conserved sequences with rBAT-b0,+AT, probably 3D structure and transport cycle as well. Our research teams and collaborators have established methods for protein expression, protein purification and functional analysis. Purified HAT has been produced and the function was well characterized along with the structure which was solved at the high resolution. Achievement of this study was recently published. Based on the study, we are able to apply several methods and optimize them to be suitable for the study of rBAT-b0,+AT and rBAT-P482L in this research plan. The current status is in the optimization processes of analytical methods.

Some of our analytical assays were originally planned to be conducted at the collaborator’s laboratories (in Osaka and USA). This part needs to be postponed due to the restriction on the traveling regarding the emergency control of COVID-19 pandemic. To solve the problem, we rearrange our schedule to focus on other assays which we are able to proceed at our laboratory, Nara Medical University. Moreover, we are developing a novel assay. Combination of multiple assay systems will convince the results and outcome.

今後の研究の推進方策

The future work and strategies are planned as described in the original research plan without major change.

The research plan has two scientific purposes. To clarify these purposes, we aim to utilize several strategies as described in the original research plan. Most of them were planned to be conducted at Nara Medical University while other few were originally planned to be conducted in Osaka and USA. All strategies were formerly planned to be started in FY2019 and partially finished in FY2020. In this regard, some strategies are on-going as planned and will be taken as priorities. However, few experiments which were planned to be conducted in Osaka and USA will be postponed from FY2020 to FY2021 due to the current travel restriction regarding COVID-19 pandemic.

次年度使用額が生じた理由

A part of the budget was originally planned to be used for traveling fee in order to conduct an experiment in the collaborator's laboratory. However, due to the traveling restriction regarding COVID-19 pandemic controlling, this traveling plan is postponed to FY2020 instead.

  • 研究成果

    (6件)

すべて 2020 2019

すべて 雑誌論文 (1件) (うち国際共著 1件、 査読あり 1件) 学会発表 (5件) (うち招待講演 4件)

  • [雑誌論文] Cryo-EM structure of the human L-type amino acid transporter 1 in complex with glycoprotein CD98hc2019

    • 著者名/発表者名
      Lee Y, Wiriyasermkul P, Jin C, Quan L, Ohgaki R, Okuda S, Kusakizako T, Nishizawa T, Oda K, Ishitani R, Yokoyama T, Nakane T, Shirouzu M, Endou H, Nagamori S, Kanai Y, Nureki O
    • 雑誌名

      Nature Structural & Molecular Biology

      巻: 26(6) ページ: 510-517

    • DOI

      https://doi.org/10.1038/s41594-019-0237-7

    • 査読あり / 国際共著
  • [学会発表] Function and structure of heterodimeric amino acid transporters: toward the understanding of their physiological properties and pharmaceutical relevance2020

    • 著者名/発表者名
      Wiriyasermkul P, Nagamori S
    • 学会等名
      The 140th Annual Meeting of the Pharmaceutical Society of Japan
    • 招待講演
  • [学会発表] Function and structure of heterodimeric amino acid transporters2020

    • 著者名/発表者名
      Wiriyasermkul P, Nagamori S.
    • 学会等名
      Ron Kaback博士追悼記念 第二回細胞形成研究会
    • 招待講演
  • [学会発表] Combination of structural and biochemical approaches reveals transport mechanism of Nucleobase/ascorbate transporter2019

    • 著者名/発表者名
      Wiriyasermkul P, Quick M
    • 学会等名
      The 92nd annual meeting of the Japanese Biochemical Society
    • 招待講演
  • [学会発表] Function and structure of heterodimeric amino acid transporters2019

    • 著者名/発表者名
      Wiriyasermkul P, Nagamori S
    • 学会等名
      生体コモンスペース研究会
  • [学会発表] Proteomics and phosphoproteomics of brain organoids2019

    • 著者名/発表者名
      Wiriyasermkul P, Nagamori S
    • 学会等名
      ASUKA symposium
    • 招待講演

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公開日: 2021-01-27  

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