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2020 Fiscal Year Annual Research Report

Intrinsic periodicity of cellular systems and its modulation as the driving force be

Administrative Group

Project AreaIntrinsic periodicity of cellular systems and its modulation as the driving force behind plant development
Project/Area Number 19H05670
Research InstitutionNara Institute of Science and Technology

Principal Investigator

中島 敬二  奈良先端科学技術大学院大学, 先端科学技術研究科, 教授 (80273853)

Co-Investigator(Kenkyū-buntansha) 上田 貴志  基礎生物学研究所, 細胞動態研究部門, 教授 (10311333)
植田 美那子  東北大学, 生命科学研究科, 教授 (20598726)
望月 敦史  京都大学, ウイルス・再生医科学研究所, 教授 (10304726)
近藤 洋平  大学共同利用機関法人自然科学研究機構(新分野創成センター、アストロバイオロジーセンター、生命創成探究, 生命創成探究センター, 助教 (00724444)
稲見 昌彦  東京大学, 先端科学技術研究センター, 教授 (00345117)
遠藤 求  奈良先端科学技術大学院大学, 先端科学技術研究科, 教授 (80551499)
深城 英弘  神戸大学, 理学研究科, 教授 (80324979)
河内 孝之  京都大学, 生命科学研究科, 教授 (40202056)
小田 祥久  国立遺伝学研究所, 遺伝形質研究系, 教授 (30583257)
塚谷 裕一  東京大学, 大学院理学系研究科(理学部), 教授 (90260512)
Project Period (FY) 2019-06-28 – 2024-03-31
Keywords植物発生 / 周期性 / 細胞動態 / 数理解析 / 人間拡張工学
Outline of Annual Research Achievements

本年度は、年度開始当初から新型コロナウィルス感染症により対面でのディスカッションや海外渡航が禁止され、総括班活動を様々な制限下で行う必要が生じたが、総括班員の情報学者の主導により、オンラインコミュニケーションツールを積極的に導入することで、円滑かつ活発な総括班活動を展開した。まず本年度から参画した25の公募研究班について、共同研究の可能性を基に6つのグループに分けてオンラインミーティングを開催した。これにより初対面の研究者間においても多くの学際融合研究が開始された。年度開始当初にはまだ普及していなかったZoomやSpatial chatといったツールを積極的に用いて領域会議や総括班会議、若手ワークショップを開催した。オンライン会議開催のノウハウをレポートにまとめて領域HPで公開することで、研究者コミュニティに貢献した。
国際活動支援のうち若手研究者の海外派遣支援は中止を余儀なくされた。また神戸大学で行う予定で準備していた国際シンポジウム"From Cellular Dynamics to Morphology"については、招聘を予定していたスピーカーの同意を得てウェビナーシリーズとして開催した。これには世界30か国から600名を超える参加者があり、非常に好評であった。
若手ワークショップもオンライン形式で開催し、大学院生や研究員による発表に加え、領域外の研究者による融合研究セミナーや、キャリア支援セミナーを開催した。また若手6チームにより融合研究コンペを開催した。数理解析道場と画像解析道場もオンラインで並行して開催した。

Current Status of Research Progress
Current Status of Research Progress

1: Research has progressed more than it was originally planned.

Reason

コロナ下において対面での活動がほぼすべて制限された中で、本領域の強みを活かしてオンラインによる領域会議をいち早く成功させた。オンライン会議開催のノウハウを公表し、日本植物学会大会などの大規模学会の円滑な開催に貢献することが出来た。オンラインで開催した若手融合研究コンペでは、複数の斬新なアイデアが提案され、将来を担う若手研究者の融合マインドの醸成に大きく貢献することが出来た。

Strategy for Future Research Activity

領域3年目以降にも、コロナ禍により活動が制限されることが予想されるため、本年度に培ったオンラインコミュニケーションのスキルをさらに発展させて展開する。若手向けのテクニカルワークショップ(道場)においては、オンラインツールを用いたハンズオン講習会を行い、実践的な内容を盛り込む。
領域会議や総括班会議については、新型コロナ感染症の拡大状況を注視しつつ、状況によりオンサイト開催やハイブリッド開催の機会を伺い、研究者どうしのコネクションが絶たれないように留意する。総括班による、①細胞動態観察支援、②画像情報解析支援、③理論モデル構築支援(数理生物学支援)、④一細胞解析支援、の4つの研究支援を継続する。一細胞解析支援については、当初想定されていた方法に加えてセルソーターやDroplet方式を用い、植物細胞に最適化した方法論の開発を開始する。人間拡張工学については、バーチャルリアリティーを用いたサンプルの可視化技術を開発する。
国際活動支援においては、本年度好評であったウェビナーシリーズを来年度も開催する。公募班員の意見も聴きながらテーマを絞った内容で開催することを計画している。国際若手ワークショップについても、海外の共同研究者のラボから学生やポスドク研究者を招くことが難しいと予想されるため、上記のウェビナーシリーズにおいて、領域内の若手研究者の発表を盛り込むことを検討する。若手研究者海外渡航支援については、オンライン国際学会の参加支援を含めて継続する。
広報活動においては、引き続きSNSやプレスリリースを通じた広報活動を継続するほか、メディアや展示会、一般向けのアウトリーチ活動などの機会を利用し、本領域ならではの成果発信を行う。

  • Research Products

    (73 results)

All 2021 2020 Other

All Int'l Joint Research (6 results) Journal Article (59 results) (of which Int'l Joint Research: 18 results,  Peer Reviewed: 59 results,  Open Access: 35 results) Presentation (6 results) (of which Int'l Joint Research: 6 results) Remarks (1 results) Funded Workshop (1 results)

  • [Int'l Joint Research] Max Planck Institute/Heinrich-Heine University/Universitat Potsdam(ドイツ)

    • Country Name
      GERMANY
    • Counterpart Institution
      Max Planck Institute/Heinrich-Heine University/Universitat Potsdam
    • # of Other Institutions
      1
  • [Int'l Joint Research] INRAE/Universite Paris-Saclay/Ecole Normale Superieure de Lyon(フランス)

    • Country Name
      FRANCE
    • Counterpart Institution
      INRAE/Universite Paris-Saclay/Ecole Normale Superieure de Lyon
  • [Int'l Joint Research] University of Warwick/University of Nottingham(英国)

    • Country Name
      UNITED KINGDOM
    • Counterpart Institution
      University of Warwick/University of Nottingham
  • [Int'l Joint Research] Ohio State University/University of Missouri/University of Washington(米国)

    • Country Name
      U.S.A.
    • Counterpart Institution
      Ohio State University/University of Missouri/University of Washington
    • # of Other Institutions
      2
  • [Int'l Joint Research] Agriculture Victoria/The University of Western Australia/Monash University(オーストラリア)

    • Country Name
      AUSTRALIA
    • Counterpart Institution
      Agriculture Victoria/The University of Western Australia/Monash University
  • [Int'l Joint Research]

    • # of Other Countries
      8
  • [Journal Article] Fungal-Type Terpene Synthases in Marchantia polymorpha Are Involved in Sesquiterpene Biosynthesis in Oil Body Cells2021

    • Author(s)
      Takizawa Ryosuke、Hatada Miki、Moriwaki Yuta、Abe Sachika、Yamashita Yuko、Arimitsu Ryoma、Yamato Katsuyuki T、Nishihama Ryuichi、Kohchi Takayuki、Koeduka Takao、Chen Feng、Matsui Kenji
    • Journal Title

      Plant and Cell Physiology

      Volume: 62 Pages: 528~537

    • DOI

      10.1093/pcp/pcaa175

    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] 3-Phenyllactic acid, a root-promoting substance isolated from Bokashi fertilizer, exhibits synergistic effects with tryptophan2021

    • Author(s)
      Maki Yuko、Soejima Hiroshi、Kitamura Toru、Sugiyama Tamizi、Sato Takeo、Watahiki Masaaki K.、Yamaguchi Junji
    • Journal Title

      Plant Biotechnology

      Volume: 38 Pages: 9~16

    • DOI

      10.5511/plantbiotechnology.20.0727a

    • Peer Reviewed
  • [Journal Article] A BLUS1 kinase signal and a decrease in intercellular CO2 concentration are necessary for stomatal opening in response to blue light2021

    • Author(s)
      Hosotani Sakurako、Yamauchi Shota、Kobayashi Haruki、Fuji Saashia、Koya Shigekazu、Shimazaki Ken-ichiro、Takemiya Atsushi
    • Journal Title

      The Plant Cell

      Volume: 33 Pages: 1813~1827

    • DOI

      10.1093/plcell/koab067

    • Peer Reviewed / Open Access
  • [Journal Article] A Pulse-chase EdU Method for Detection of Cell Division Orientation in Arabidopsis and Juncus prismatocarpus Leaf Primordia2021

    • Author(s)
      Yin Xiaofeng、Tsukaya Hirokazu
    • Journal Title

      BIO-PROTOCOL

      Volume: 11 Pages: e3882

    • DOI

      10.21769/BioProtoc.3882

    • Peer Reviewed / Open Access
  • [Journal Article] A Role for Auxin in Triggering Lamina Outgrowth of Unifacial Leaves2021

    • Author(s)
      Nukazuka Akira、Yamaguchi Takahiro、Tsukaya Hirokazu
    • Journal Title

      Plant Physiology

      Volume: 186 Pages: 1013~1024

    • DOI

      10.1093/plphys/kiab087

    • Peer Reviewed
  • [Journal Article] AGC kinases and MAB4/MEL proteins maintain PIN polarity by limiting lateral diffusion in plant cells2021

    • Author(s)
      Matous Glanc, Kasper Van Gelderen, Lukas Hoermayer, Shutang Tan, Satoshi Naramoto, Xixi Zhang, David Domjan, Ludmila Vcelarova, Robert Hauschil, Alexander Johnson, Edward de Koning, Maritza van Dop, Eike Rademacher, Stef Janson, Xiaoyu Wei, Gergely Molnar, Matyas Fendrych, Bert De Rybel, Remko Offringa, Jiri Friml
    • Journal Title

      Current Biology

      Volume: 31 Pages: 1918~1930.e5

    • DOI

      10.1016/j.cub.2021.02.028

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Cargo sorting zones in the trans-Golgi network visualized by super-resolution confocal live imaging microscopy in plants2021

    • Author(s)
      Shimizu Yutaro、Takagi Junpei、Ito Emi、Ito Yoko、Ebine Kazuo、Komatsu Yamato、Goto Yumi、Sato Mayuko、Toyooka Kiminori、Ueda Takashi、Kurokawa Kazuo、Uemura Tomohiro、Nakano Akihiko
    • Journal Title

      Nature Communications

      Volume: 12 Pages: 1901

    • DOI

      10.1038/s41467-021-22267-0

    • Peer Reviewed / Open Access
  • [Journal Article] Desmethyl butenolides are optimal ligands for karrikin receptor proteins2021

    • Author(s)
      Yao Jiaren、Scaffidi Adrian、Meng Yongjie、Melville Kim T.、Komatsu Aino、Khosla Aashima、Nelson David C.、Kyozuka Junko、Flematti Gavin R.、Waters Mark T.
    • Journal Title

      New Phytologist

      Volume: 230 Pages: 1003~1016

    • DOI

      10.1111/nph.17224

    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Dynamics of the cell fate specifications during female gametophyte development in Arabidopsis2021

    • Author(s)
      Susaki Daichi、Suzuki Takamasa、Maruyama Daisuke、Ueda Minako、Higashiyama Tetsuya、Kurihara Daisuke
    • Journal Title

      PLOS Biology

      Volume: 19 Pages: e3001123

    • DOI

      10.1371/journal.pbio.3001123

    • Peer Reviewed / Open Access
  • [Journal Article] Endogenous gibberellins affect root nodule symbiosis via transcriptional regulation of NODULE INCEPTION in Lotus japonicus2021

    • Author(s)
      Akamatsu Akira、Nagae Miwa、Nishimura Yuka、Romero Montero Daniela、Ninomiya Satsuki、Kojima Mikiko、Takebayashi Yumiko、Sakakibara Hitoshi、Kawaguchi Masayoshi、Takeda Naoya
    • Journal Title

      The Plant Journal

      Volume: 105 Pages: 1507~1520

    • DOI

      10.1111/tpj.15128

    • Peer Reviewed
  • [Journal Article] Genome-wide analysis of spatiotemporal expression patterns during rice leaf development2021

    • Author(s)
      Miya Masayuki、Yoshikawa Takanori、Sato Yutaka、Itoh Jun-Ichi
    • Journal Title

      BMC Genomics

      Volume: 22 Pages: 169

    • DOI

      10.1186/s12864-021-07494-5

    • Peer Reviewed / Open Access
  • [Journal Article] Hierarchical modeling of mechano-chemical dynamics of epithelial sheets across cells and tissue2021

    • Author(s)
      Asakura Yoshifumi、Kondo Yohei、Aoki Kazuhiro、Naoki Honda
    • Journal Title

      Scientific Reports

      Volume: 11 Pages: 4069

    • DOI

      10.1038/s41598-021-83396-6

    • Peer Reviewed / Open Access
  • [Journal Article] Identification of a Devernalization Inducer by Chemical Screening Approaches in Arabidopsis thaliana2021

    • Author(s)
      Shirakawa Makoto、Morisaki Yukaho、Gan Eng-Seng、Sato Ayato、Ito Toshiro
    • Journal Title

      Frontiers in Plant Science

      Volume: 12 Pages: 634068

    • DOI

      10.3389/fpls.2021.634068

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Identification of genes involved in Meloidogyne incognita-induced gall formation processes in Arabidopsis thaliana2021

    • Author(s)
      Suzuki Reira、Ueda Takashi、Wada Takuji、Ito Masaki、Ishida Takashi、Sawa Shinichiro
    • Journal Title

      Plant Biotechnology

      Volume: 38 Pages: 1~8

    • DOI

      10.5511/plantbiotechnology.20.0716a

    • Peer Reviewed
  • [Journal Article] MYB3R-mediated active repression of cell cycle and growth under salt stress in Arabidopsis thaliana2021

    • Author(s)
      Okumura Toru、Nomoto Yuji、Kobayashi Kosuke、Suzuki Takamasa、Takatsuka Hirotomo、Ito Masaki
    • Journal Title

      Journal of Plant Research

      Volume: 134 Pages: 261~277

    • DOI

      10.1007/s10265-020-01250-8

    • Peer Reviewed
  • [Journal Article] Ran-GTP Is Non-essential to Activate NuMA for Mitotic Spindle-Pole Focusing but Dynamically Polarizes HURP Near Chromosomes2021

    • Author(s)
      Tsuchiya Kenta、Hayashi Hisato、Nishina Momoko、Okumura Masako、Sato Yoshikatsu、Kanemaki Masato T.、Goshima Gohta、Kiyomitsu Tomomi
    • Journal Title

      Current Biology

      Volume: 31 Pages: 115~127.e3

    • DOI

      10.1016/j.cub.2020.09.091

    • Peer Reviewed / Open Access
  • [Journal Article] Stem integrity in Arabidopsis thaliana requires a load-bearing epidermis2021

    • Author(s)
      Asaoka Mariko、Ooe Mao、Gunji Shizuka、Milani Pascale、Runel Gael、Horiguchi Gorou、Hamant Olivier、Sawa Shinichiro、Tsukaya Hirokazu、Ferjani Ali
    • Journal Title

      Development

      Volume: 148 Pages: 198028

    • DOI

      10.1242/dev.198028

    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Temperature-dependent fasciation mutants provide a link between mitochondrial RNA processing and lateral root morphogenesis2021

    • Author(s)
      Otsuka Kurataka、Mamiya Akihito、Konishi Mineko、Nozaki Mamoru、Kinoshita Atsuko、Tamaki Hiroaki、Arita Masaki、Saito Masato、Yamamoto Kayoko、Hachiya Takushi、Noguchi Ko、Ueda Takashi、Yagi Yusuke、Kobayashi Takehito、Nakamura Takahiro、Sato Yasushi、Hirayama Takashi、Sugiyama Munetaka
    • Journal Title

      eLife

      Volume: 10 Pages: e61611

    • DOI

      10.7554/eLife.61611

    • Peer Reviewed / Open Access
  • [Journal Article] The singularity response reveals entrainment properties of the plant circadian clock2021

    • Author(s)
      Masuda Kosaku、Tokuda Isao T.、Nakamichi Norihito、Fukuda Hirokazu
    • Journal Title

      Nature Communications

      Volume: 12 Pages: 864

    • DOI

      10.1038/s41467-021-21167-7

    • Peer Reviewed / Open Access
  • [Journal Article] Time Lag Between Light and Heat Diurnal Cycles Modulates CIRCADIAN CLOCK ASSOCIATION 1 Rhythm and Growth in Arabidopsis thaliana2021

    • Author(s)
      Masuda Kosaku、Yamada Tatsuya、Kagawa Yuya、Fukuda Hirokazu
    • Journal Title

      Frontiers in Plant Science

      Volume: 11 Pages: 614360

    • DOI

      10.3389/fpls.2020.614360

    • Peer Reviewed / Open Access
  • [Journal Article] Tissue growth constrains root organ outlines into an isometrically scalable shape2021

    • Author(s)
      Fujiwara Motohiro、Goh Tatsuaki、Tsugawa Satoru、Nakajima Keiji、Fukaki Hidehiro、Fujimoto Koichi
    • Journal Title

      Development

      Volume: 148 Pages: dev196253

    • DOI

      10.1242/dev.196253

    • Peer Reviewed / Open Access
  • [Journal Article] Trade-off between Plasticity and Velocity in Mycelial Growth2021

    • Author(s)
      Fukuda Sayumi、Yamamoto Riho、Yanagisawa Naoki、Takaya Naoki、Sato Yoshikatsu、Riquelme Meritxell、Takeshita Norio
    • Journal Title

      mBio

      Volume: 12 Pages: e03196-20

    • DOI

      10.1128/mBio.03196-20

    • Peer Reviewed
  • [Journal Article] Two atypical ANGUSTIFOLIA without a plant-specific C-terminus regulate gametophore and sporophyte shapes in the moss Physcomitrium (Physcomitrella) patens2021

    • Author(s)
      Takechi Katsuaki、Nagase Hiroaki、Furuya Tomoyuki、Hattori Koro、Sato Yoshikatsu、Miyajima Kensuke、Higuchi Tomofumi、Matsuda Ryuya、Takio Susumu、Tsukaya Hirokazu、Takano Hiroyoshi
    • Journal Title

      The Plant Journal

      Volume: 105 Pages: 1390~1399

    • DOI

      10.1111/tpj.15121

    • Peer Reviewed
  • [Journal Article] Using linkage logic theory to control dynamics of a gene regulatory network of a chordate embryo2021

    • Author(s)
      Kobayashi Kenji、Maeda Kazuki、Tokuoka Miki、Mochizuki Atsushi、Satou Yutaka
    • Journal Title

      Scientific Reports

      Volume: 11 Pages: 4001

    • DOI

      10.1038/s41598-021-83045-y

    • Peer Reviewed / Open Access
  • [Journal Article] Wound-inducible ANAC071 and ANAC096 transcription factors promote cambial cell formation in incised Arabidopsis flowering stems2021

    • Author(s)
      Matsuoka Keita、Sato Ryosuke、Matsukura Yuki、Kawajiri Yoshiki、Iino Hiromi、Nozawa Naoyuki、Shibata Kyomi、Kondo Yuki、Satoh Shinobu、Asahina Masashi
    • Journal Title

      Communications Biology

      Volume: 4 Pages: 369

    • DOI

      10.1038/s42003-021-01895-8

    • Peer Reviewed / Open Access
  • [Journal Article] ZEITLUPE enhances expression of PIF4 and YUC8 in the upper aerial parts of Arabidopsis seedlings to positively regulate hypocotyl elongation2021

    • Author(s)
      Saitoh Aya、Takase Tomoyuki、Abe Hiroshi、Watahiki Masaaki、Hirakawa Yuki、Kiyosue Tomohiro
    • Journal Title

      Plant Cell Reports

      Volume: 40 Pages: 479~489

    • DOI

      10.1007/s00299-020-02643-8

    • Peer Reviewed
  • [Journal Article] Fused Thiophene-S,S-dioxide-Based Super-Photostable Fluorescent Marker for Lipid Droplets2020

    • Author(s)
      Taki Masayasu、Kajiwara Keiji、Yamaguchi Eriko、Sato Yoshikatsu、Yamaguchi Shigehiro
    • Journal Title

      ACS Materials Letters

      Volume: 3 Pages: 42~49

    • DOI

      10.1021/acsmaterialslett.0c00451

    • Peer Reviewed
  • [Journal Article] A new role for histone demethylases in the maintenance of plant genome integrity2020

    • Author(s)
      Antunez-Sanchez Javier、Naish Matthew、Ramirez-Prado Juan Sebastian、Ohno Sho、Huang Ying、Dawson Alexander、Opassathian Korawit、Manza-Mianza Deborah、Ariel Federico、Raynaud Cecile、Wibowo Anjar、Daron Josquin、Ueda Minako、Latrasse David、Slotkin R Keith、Weigel Detlef、Benhamed Moussa、Gutierrez-Marcos Jose
    • Journal Title

      eLife

      Volume: 9 Pages: e58533

    • DOI

      10.7554/eLife.58533

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] A Peptide Pair Coordinates Regular Ovule Initiation Patterns with Seed Number and Fruit Size2020

    • Author(s)
      Kawamoto Nozomi、Del Carpio Dunia Pino、Hofmann Alexander、Mizuta Yoko、Kurihara Daisuke、Higashiyama Tetsuya、Uchida Naoyuki、Torii Keiko U.、Colombo Lucia、Groth Georg、Simon Rudiger
    • Journal Title

      Current Biology

      Volume: 30 Pages: 4352~4361.e4

    • DOI

      10.1016/j.cub.2020.08.050

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] A super-sensitive auxin-inducible degron system with an engineered auxin-TIR1 pair2020

    • Author(s)
      Nishimura Kohei、Yamada Ryotaro、Hagihara Shinya、Iwasaki Rie、Uchida Naoyuki、Kamura Takumi、Takahashi Koji、Torii Keiko U、Fukagawa Tatsuo
    • Journal Title

      Nucleic Acids Research

      Volume: 48 Pages: e108~e108

    • DOI

      10.1093/nar/gkaa748

    • Peer Reviewed
  • [Journal Article] An Artificial Conversion of Roots into Organs with Shoot Stem Characteristics by Inducing Two Transcription Factors2020

    • Author(s)
      Hanano Shigeru、Tomatsu Hajime、Ohnishi Ai、Kobayashi Koichi、Kondo Yuki、Betsuyaku Shigeyuki、Takita Eiji、Ogata Yoshiyuki、Ozawa Keishi、Suda Kunihiro、Hosouchi Tsutomu、Nagase Takahiro、Suzuki Hideyuki、Sakurai Nozomu、Masumoto Hiroshi、Fukuda Hiroo、Shibata Daisuke
    • Journal Title

      iScience

      Volume: 23 Pages: 101332~101332

    • DOI

      10.1016/j.isci.2020.101332

    • Peer Reviewed / Open Access
  • [Journal Article] An energy landscape approach to understanding variety and robustness in tissue morphogenesis2020

    • Author(s)
      Takeda Hironori、Kameo Yoshitaka、Inoue Yasuhiro、Adachi Taiji
    • Journal Title

      Biomechanics and Modeling in Mechanobiology

      Volume: 19 Pages: 471~479

    • DOI

      10.1007/s10237-019-01222-5

    • Peer Reviewed / Open Access
  • [Journal Article] an3-Mediated Compensation Is Dependent on a Cell-Autonomous Mechanism in Leaf Epidermal Tissue2020

    • Author(s)
      Nozaki Mamoru、Kawade Kensuke、Horiguchi Gorou、Tsukaya Hirokazu
    • Journal Title

      Plant and Cell Physiology

      Volume: 61 Pages: 1181~1190

    • DOI

      10.1093/pcp/pcaa048

    • Peer Reviewed
  • [Journal Article] Arabidopsis GEX1 Is a Nuclear Membrane Protein of Gametes Required for Nuclear Fusion During Reproduction2020

    • Author(s)
      Nishikawa Shuh-ichi、Yamaguchi Yuki、Suzuki Chiharu、Yabe Ayaka、Sato Yuzuru、Kurihara Daisuke、Sato Yoshikatsu、Susaki Daichi、Higashiyama Tetsuya、Maruyama Daisuke
    • Journal Title

      Frontiers in Plant Science

      Volume: 11 Pages: 548032

    • DOI

      10.3389/fpls.2020.548032

    • Peer Reviewed / Open Access
  • [Journal Article] ARP2/3-independent WAVE/SCAR pathway and class XI myosin control sperm nuclear migration in flowering plants2020

    • Author(s)
      Ali Mohammad Foteh、Fatema Umma、Peng Xiongbo、Hacker Samuel W.、Maruyama Daisuke、Sun Meng-Xiang、Kawashima Tomokazu
    • Journal Title

      Proceedings of the National Academy of Sciences

      Volume: 117 Pages: 32757~32763

    • DOI

      10.1073/pnas.2015550117

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Cell-cell adhesion in plant grafting is facilitated by β-1,4-glucanases2020

    • Author(s)
      Notaguchi Michitaka、Kurotani Ken-ichi、Sato Yoshikatsu、Tabata Ryo、Kawakatsu Yaichi、Okayasu Koji、Sawai Yu、Okada Ryo、Asahina Masashi、Ichihashi Yasunori、Shirasu Ken、Suzuki Takamasa、Niwa Masaki、Higashiyama Tetsuya
    • Journal Title

      Science

      Volume: 369 Pages: 698~702

    • DOI

      10.1126/science.abc3710

    • Peer Reviewed
  • [Journal Article] Cellular requirements for PIN polar cargo clustering in Arabidopsis thaliana2020

    • Author(s)
      Li Hongjiang、Wangenheim Daniel、Zhang Xixi、Tan Shutang、Darwish‐Miranda Nasser、Naramoto Satoshi、Wabnik Krzysztof、De Rycke Riet、Kaufmann Walter A.、Gutl Daniel、Tejos Ricardo、Grones Peter、Ke Meiyu、Chen Xu、Dettmer Jan、Friml Jiri
    • Journal Title

      New Phytologist

      Volume: 229 Pages: 351~369

    • DOI

      10.1111/nph.16887

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Design principles of a minimal auxin response system2020

    • Author(s)
      Kato Hirotaka、Mutte Sumanth K.、Suzuki Hidemasa、Crespo Isidro、Das Shubhajit、Radoeva Tatyana、Fontana Mattia、Yoshitake Yoshihiro、Hainiwa Emi、van den Berg Willy、Lindhoud Simon、Ishizaki Kimitsune、Hohlbein Johannes、Borst Jan Willem、Boer D. Roeland、Nishihama Ryuichi、Kohchi Takayuki、Weijers Dolf
    • Journal Title

      Nature Plants

      Volume: 6 Pages: 473~482

    • DOI

      10.1038/s41477-020-0662-y

    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Early Endosomal Trafficking Component BEN2/VPS45 Plays a Crucial Role in Internal Tissues in Regulating Root Growth and Meristem Size in Arabidopsis2020

    • Author(s)
      Matsuura Yuki、Fukasawa Narumi、Ogita Kosuke、Sasabe Michiko、Kakimoto Tatsuo、Tanaka Hirokazu
    • Journal Title

      Frontiers in Plant Science

      Volume: 11 Pages: 1027

    • DOI

      10.3389/fpls.2020.01027

    • Peer Reviewed / Open Access
  • [Journal Article] Excess Pyrophosphate Restrains Pavement Cell Morphogenesis and Alters Organ Flatness in Arabidopsis thaliana2020

    • Author(s)
      Gunji Shizuka、Oda Yoshihisa、Takigawa-Imamura Hisako、Tsukaya Hirokazu、Ferjani Ali
    • Journal Title

      Frontiers in Plant Science

      Volume: 11 Pages: 31

    • DOI

      10.3389/fpls.2020.00031

    • Peer Reviewed / Open Access
  • [Journal Article] Expression Profiles of ANGUSTIFOLIA3 and SHOOT MERISTEMLESS, Key Genes for Meristematic Activity in a One-Leaf Plant Monophyllaea glabra, Revealed by Whole-Mount In Situ Hybridization2020

    • Author(s)
      Kinoshita Ayaka、Koga Hiroyuki、Tsukaya Hirokazu
    • Journal Title

      Frontiers in Plant Science

      Volume: 11 Pages: 1160

    • DOI

      10.3389/fpls.2020.01160

    • Peer Reviewed / Open Access
  • [Journal Article] Improvement of Phycocyanobilin Synthesis for Genetically Encoded Phytochrome-Based Optogenetics2020

    • Author(s)
      Uda Youichi、Miura Haruko、Goto Yuhei、Yamamoto Kei、Mii Yusuke、Kondo Yohei、Takada Shinji、Aoki Kazuhiro
    • Journal Title

      ACS Chemical Biology

      Volume: 15 Pages: 2896~2906

    • DOI

      10.1021/acschembio.0c00477

    • Peer Reviewed
  • [Journal Article] Induction of Multichotomous Branching by CLAVATA Peptide in Marchantia polymorpha2020

    • Author(s)
      Hirakawa Yuki、Fujimoto Toko、Ishida Sakiko、Uchida Naoyuki、Sawa Shinichiro、Kiyosue Tomohiro、Ishizaki Kimitsune、Nishihama Ryuichi、Kohchi Takayuki、Bowman John L.
    • Journal Title

      Current Biology

      Volume: 30 Pages: 3833~3840.e4

    • DOI

      10.1016/j.cub.2020.07.016

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Longin R-SNARE is retrieved from the plasma membrane by ANTH domain-containing proteins in Arabidopsis2020

    • Author(s)
      Fujimoto Masaru、Ebine Kazuo、Nishimura Kohji、Tsutsumi Nobuhiro、Ueda Takashi
    • Journal Title

      Proceedings of the National Academy of Sciences

      Volume: 117 Pages: 25150~25158

    • DOI

      10.1073/pnas.2011152117

    • Peer Reviewed / Open Access
  • [Journal Article] Maximum weighted matching with few edge crossings for 2-layered bipartite graph2020

    • Author(s)
      Haraguchi Kazuya、Torii Kotaro、Endo Motomu
    • Journal Title

      Discrete Applied Mathematics

      Volume: 287 Pages: 40~52

    • DOI

      10.1016/j.dam.2020.07.017

    • Peer Reviewed
  • [Journal Article] Mitochondrial dynamics and segregation during the asymmetric division of Arabidopsis zygotes2020

    • Author(s)
      Kimata Yusuke、Higaki Takumi、Kurihara Daisuke、Ando Naoe、Matsumoto Hikari、Higashiyama Tetsuya、Ueda Minako
    • Journal Title

      Quantitative Plant Biology

      Volume: 1 Pages: e3

    • DOI

      10.1017/qpb.2020.4

    • Peer Reviewed / Open Access
  • [Journal Article] Morphological and Physiological Framework Underlying Plant Longevity in Arabidopsis thaliana2020

    • Author(s)
      Wang Yukun、Kumaishi Kie、Suzuki Takamasa、Ichihashi Yasunori、Yamaguchi Nobutoshi、Shirakawa Makoto、Ito Toshiro
    • Journal Title

      Frontiers in Plant Science

      Volume: 11 Pages: 600726

    • DOI

      10.3389/fpls.2020.600726

    • Peer Reviewed / Open Access
  • [Journal Article] Morphology of gemmae, an overlooked taxonomic trait in the genus Marchantia L. (Marchantiaceae)2020

    • Author(s)
      Zheng Tian-Xiong、Inoue Yuya、Shimamura Masaki
    • Journal Title

      The Bryologist

      Volume: 123 Pages: 601-610

    • DOI

      10.1639/0007-2745-123.4.601

    • Peer Reviewed
  • [Journal Article] Post‐Assembly Photomasking of Potassium Acyltrifluoroborates (KATs) for Two‐Photon 3D Patterning of PEG‐Hydrogels2020

    • Author(s)
      Song Haewon、Wu Dino、Mazunin Dimitry、Liu Sizhou M.、Sato Yoshikatsu、Broguiere Nicolas、Zenobi‐Wong Marcy、Bode Jeffrey W.
    • Journal Title

      Helvetica Chimica Acta

      Volume: 103 Pages: 11

    • DOI

      10.1002/hlca.202000172

    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Regulation of Photosynthetic Carbohydrate Metabolism by a Raf-Like Kinase in the Liverwort Marchantia polymorpha2020

    • Author(s)
      Koide Eri、Suetsugu Noriyuki、Iwano Megumi、Gotoh Eiji、Nomura Yuko、Stolze Sara Christina、Nakagami Hirofumi、Kohchi Takayuki、Nishihama Ryuichi
    • Journal Title

      Plant and Cell Physiology

      Volume: 61 Pages: 631~643

    • DOI

      10.1093/pcp/pcz232

    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Regulation of the Poly(A) Status of Mitochondrial mRNA by Poly(A)-Specific Ribonuclease Is Conserved among Land Plants2020

    • Author(s)
      Kanazawa Mai、Ikeda Yoko、Nishihama Ryuichi、Yamaoka Shohei、Lee Nam-Hee、Yamato Katsuyuki T、Kohchi Takayuki、Hirayama Takashi
    • Journal Title

      Plant and Cell Physiology

      Volume: 61 Pages: 470~480

    • DOI

      10.1093/pcp/pcz212

    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Root system architecture analysis in Mesembryanthemum crystallinum (ice plant) seedlings reveals characteristic root halotropic response2020

    • Author(s)
      Otsuka Mayuko、Kato Hikaru、Yamada Shyota、Nakayama Tatsuhiko、Sakaoka Satomi、Morikami Atsushi、Tsukagoshi Hironaka
    • Journal Title

      Biology Open

      Volume: 10 Pages: bio052142

    • DOI

      10.1242/bio.052142

    • Peer Reviewed / Open Access
  • [Journal Article] Root‐knot nematodes induce gall formation by recruiting developmental pathways of post‐embryonic organogenesis and regeneration to promote transient pluripotency2020

    • Author(s)
      Olmo Rocio、Cabrera Javier、Diaz-Manzano Fernando E.、Ruiz‐Ferrer Virginia、Barcala Marta、Ishida Takashi、Garcia Alejandra、Andres Maria Fe、Ruiz‐Lara Simon、Verdugo Isabel、Pernas Monica、Fukaki Hidehiro et al.
    • Journal Title

      New Phytologist

      Volume: 227 Pages: 200~215

    • DOI

      10.1111/nph.16521

    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Subnuclear gene positioning through lamina association affects copper tolerance2020

    • Author(s)
      Sakamoto Yuki、Sato Mayuko、Sato Yoshikatsu、Harada Akihito、Suzuki Takamasa、Goto Chieko、Tamura Kentaro、Toyooka Kiminori、Kimura Hiroshi、Ohkawa Yasuyuki、Hara-Nishimura Ikuko、Takagi Shingo、Matsunaga Sachihiro
    • Journal Title

      Nature Communications

      Volume: 11 Pages: 5914

    • DOI

      10.1038/s41467-020-19621-z

    • Peer Reviewed / Open Access
  • [Journal Article] Suppression of class I compensated cell enlargement by xs2 mutation is mediated by salicylic acid signaling2020

    • Author(s)
      Fujikura Ushio、Ezaki Kazune、Horiguchi Gorou、Seo Mitsunori、Kanno Yuri、Kamiya Yuji、Lenhard Michael、Tsukaya Hirokazu
    • Journal Title

      PLOS Genetics

      Volume: 16 Pages: e1008873

    • DOI

      10.1371/journal.pgen.1008873

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] The Arabidopsis V-ATPase is localized to the TGN/EE via a seed plant-specific motif2020

    • Author(s)
      Lupanga Upendo、Rohrich Rachel、Askani Jana、Hilmer Stefan、Kiefer Christiane、Krebs Melanie、Kanazawa Takehiko、Ueda Takashi、Schumacher Karin
    • Journal Title

      eLife

      Volume: 9 Pages: e60568

    • DOI

      10.7554/eLife.60568

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] The liverwort oil body is formed by redirection of the secretory pathway2020

    • Author(s)
      Kanazawa Takehiko、Morinaka Hatsune、Ebine Kazuo、Shimada Takashi L.、Ishida Sakiko、Minamino Naoki、Yamaguchi Katsushi、Shigenobu Shuji、Kohchi Takayuki、Nakano Akihiko、Ueda Takashi
    • Journal Title

      Nature Communications

      Volume: 11 Pages: 6152

    • DOI

      10.1038/s41467-020-19978-1

    • Peer Reviewed / Open Access
  • [Journal Article] The nuclear envelope protein KAKU4 determines the migration order of the vegetative nucleus and sperm cells in pollen tubes2020

    • Author(s)
      Goto Chieko、Tamura Kentaro、Nishimaki Satsuki、Maruyama Daisuke、Hara-Nishimura Ikuko
    • Journal Title

      Journal of Experimental Botany

      Volume: 71 Pages: 6273~6281

    • DOI

      10.1093/jxb/eraa367

    • Peer Reviewed
  • [Journal Article] VISUAL-CC system uncovers the role of GSK3 as an orchestrator of vascular cell type ratio in plants2020

    • Author(s)
      Tamaki Takayuki、Oya Satoyo、Naito Makiko、Ozawa Yasuko、Furuya Tomoyuki、Saito Masato、Sato Mayuko、Wakazaki Mayumi、Toyooka Kiminori、Fukuda Hiroo、Helariutta Yka、Kondo Yuki
    • Journal Title

      Communications Biology

      Volume: 3 Pages: 184

    • DOI

      10.1038/s42003-020-0907-3

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Presentation] Feature Sharing Cooperative Network for Semantic Segmentation2021

    • Author(s)
      Ikedo, R. and Hotta, K.
    • Organizer
      VISAPP2021
    • Int'l Joint Research
  • [Presentation] Cell image segmentation by Feature Random Enhancement Module2021

    • Author(s)
      Ando, T. and Hotta, K
    • Organizer
      VISAPP2021
    • Int'l Joint Research
  • [Presentation] Leader-guiding collective cell rotation2020

    • Author(s)
      Matsushita, K., Yabunaka, S., Hashimura, H., Kuwayama, S. and Fujimoto, K
    • Organizer
      Proc. Symp. Simulation of Traffic Flow,
    • Int'l Joint Research
  • [Presentation] Feedback Attention for Cell Image Segmentation2020

    • Author(s)
      Tsuda, H., Shibuya, E. and Hotta, K.
    • Organizer
      ECCV Workshop on Bioimage Computing (BIC2020)
    • Int'l Joint Research
  • [Presentation] CNN to Capsule Network Transformation.2020

    • Author(s)
      Sato, T. and Hotta, K
    • Organizer
      DICTA2020
    • Int'l Joint Research
  • [Presentation] Feedback U-net for Cell Image Segmentation.2020

    • Author(s)
      Shibuya, E. and Hotta, K
    • Organizer
      CVPR Workshop on Computer Vision for Microscopy Image Analysis (CVMI2020)
    • Int'l Joint Research
  • [Remarks] 領域ホームーページ

    • URL

      https://plant-periodicity.org/

  • [Funded Workshop] From Cellular Dynamics to Morphology2020

URL: 

Published: 2022-12-28  

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