Information physics of living matters

2022 Fiscal Year Annual Research Report

• Project Area: Information physics of living matters
• Project/Area Number: 19H05794
• Research Institution: The University of Tokyo
• Principal Investigator: 岡田 康志 東京大学, 大学院医学系研究科(医学部), 教授 (50272430)
• Co-Investigator(Kenkyū-buntansha): 佐々 真一 京都大学, 理学研究科, 教授 (30235238) ; 石島 秋彦 大阪大学, 大学院生命機能研究科, 教授 (80301216) ; 沙川 貴大 東京大学, 大学院工学系研究科(工学部), 教授 (60610805) ; 伊藤 創祐 東京大学, 大学院理学系研究科(理学部), 准教授 (00771221) ; 小林 徹也 東京大学, 生産技術研究所, 教授 (90513359) ; 澤井 哲 東京大学, 大学院総合文化研究科, 教授 (20500367) ; 竹内 一将 東京大学, 大学院理学系研究科(理学部), 准教授 (50622304) ; 川口 喬吾 国立研究開発法人理化学研究所, 開拓研究本部, 理研白眉研究チームリーダー (00787319) ; 青木 一洋 大学共同利用機関法人自然科学研究機構(新分野創成センター、アストロバイオロジーセンター、生命創成探究, 生命創成探究センター, 教授 (80511427) ; 松岡 里実 大阪大学, 大学院生命機能研究科, 助教 (00569733) ; 神原 丈敏 国立研究開発法人理化学研究所, 生命機能科学研究センター, 技師 (40451637) ; 榎 佐和子 (苙口佐和子) 東京大学, 大学院理学系研究科(理学部), 特任助教 (50467635) ; 池崎 圭吾 東京大学, 大学院理学系研究科(理学部), 助教 (10722960) ; 福岡 創 大阪大学, 大学院生命機能研究科, 准教授 (50447190) ; 蔡 栄淑 大阪大学, 大学院生命機能研究科, 助教 (40378716) ; 森下 喜弘 国立研究開発法人理化学研究所, 生命機能科学研究センター, チームリーダー (00404062) ; 岩城 光宏 国立研究開発法人理化学研究所, 生命機能科学研究センター, 客員研究員 (30432503) [Withdrawn]
• Project Period (FY): 2019-06-28 – 2024-03-31
• Keywords: 情報熱力学

Outline of Annual Research Achievements

本領域は、生命現象を題材として、情報を力、エネルギーなどと同列に物理的対象として議論する新しい物理学を構築することが目標である。その理論的支柱である情報の物理学の深化発展と、実験対象たる生命現象における情報の計測を車の両輪として推進する。従って、基本的な戦略は、「情報の物理学」理論研究と「生命現象における情報」の実験・計測の融合である。そのため、異分野融合推進のための施策が総括班の活動の中心となる。
2022年度には、コロナ禍による対面での交流イベント開催への制限も緩和され、6月には第5回領域会議を淡路夢舞台国際会議場で開催することができた。公募班も含めた領域全メンバーが集結する最初の領域会議とであり、計画班を中心とした口頭発表と全参加ラボからのポスター発表を行い、対面ならではの研究交流で大いに盛り上がることとなった。引き続き、23年3月には、第6回領域会議をアクロス福岡で開催した。領域研究賞および領域奨励賞による表彰も継続した。
対面でのイベント復活により、領域計画当初から企画していた実験勉強会、理論勉強会を10月に東京大学で開催することができた。
また、異分野融合促進の中核的な事業として、理論研究者が実験現場に入り、実験研究者が理論研究室を訪れるという人材交流を推奨し、領域としてサポートしてきた。2022年度にも、共同研究のサポートを継続するとともに、共同研究の成果発表のためのサポートもスタートし、領域内共同研究が期待通りに成果をあげつつあることが確認された。
領域活動の広報としては、日本生物物理学会など関連学会でのシンポジウムや、分子モーター討論会などの関連分野の集会の共催を積極的に行うとともに、本領域の領域会議での勉強会の内容を発展させた情報熱力学の教科書を沙川が出版し、理工系専門書としては異例の売り上げを達成した。

Current Status of Research Progress

1: Research has progressed more than it was originally planned.

Reason

コロナ禍の影響から脱し、対面での領域会議の再開など、実験勉強会、理論勉強会の開催など、当初から計画していた活動を漸く行うことができた。これまでの連携強化の方策も奏功し、領域内で多くの共同研究が進められるとともに、成果も出始めており、最終年度に向けて期待される。

Strategy for Future Research Activity

コロナ禍の影響から脱したので、23年度も引き続き、対面での領域会議、実験勉強会、理論勉強会などの企画を継続発展させる。また、コロナ禍で実施できていない国際交流についても、今後強化していきたい。

Research Products

• [Journal Article] Structure-function Relationship of the Fastest Myosin (2023)
  • Author(s): ITO Kohji、HARAGUCHI Takeshi、TAMANAHA Masanori、SUZUKI Kano、MURATA Takeshi
  • Journal Title: Seibutsu Butsuri Volume: 63 Pages: 91～96
  • DOI: 10.2142/biophys.63.91
  • Peer Reviewed
• [Journal Article] <i>Trans</i>-<i>cis</i>isomerization kinetics of cyanine dyes reports on the folding states of exogeneous RNA G-quadruplexes in live cells (2023)
  • Author(s): Kitamura Akira、Tornmalm Johan、Demirbay Baris、Piguet Joachim、Kinjo Masataka、Widengren Jerker
  • Journal Title: Nucleic Acids Research Volume: 51 Pages: e27～e27
  • DOI: 10.1093/nar/gkac1255
  • Peer Reviewed
• [Journal Article] Intracellular Conformation of Amyotrophic Lateral Sclerosis-Causative TDP-43 (2023)
  • Author(s): Kitamura Akira、Yuno Sachiko、Kawamura Rintaro、Kinjo Masataka
  • Journal Title: International Journal of Molecular Sciences Volume: 24 Pages: 5513～5513
  • DOI: 10.3390/ijms24065513
  • Peer Reviewed
• [Journal Article] Geometric thermodynamics for the Fokker?Planck equation: stochastic thermodynamic links between information geometry and optimal transport (2023)
  • Author(s): Ito Sosuke
  • Journal Title: Information Geometry Volume: 7 Pages: 441～483
  • DOI: 10.1007/s41884-023-00102-3
  • Peer Reviewed
• [Journal Article] Origin, prospective identification, and function of circulating endothelial colony-forming cells in mice and humans (2023)
  • Author(s): Lin Yang、Banno Kimihiko、Gil Chang-Hyun、Myslinski Jered、Hato Takashi、Shelley William C.、Gao Hongyu、Xuei Xiaoling、Liu Yunlong、Basile David P.、Yoshimoto Momoko、Prasain Nutan、Tarnawsky Stefan P.、Adams Ralf H.、Naruse Katsuhiko、Yoshida Junko、Murphy Michael P.、Horie Kyoji、Yoder Mervin C.
  • Journal Title: JCI Insight Volume: 8 Pages: -
  • DOI: 10.1172/jci.insight.164781
  • Peer Reviewed
• [Journal Article] Nonthermal Fluctuation Accelerates Molecular Motor Kinesin (2023)
  • Author(s): ARIGA Takayuki、TATEISHI Keito、TOMISHIGE Michio、MIZUNO Daisuke
  • Journal Title: Seibutsu Butsuri Volume: 63 Pages: 86～90
  • DOI: 10.2142/biophys.63.86
  • Peer Reviewed
• [Journal Article] Optical Control of Cell Signaling with Red/Far-Red Light-Responsive Optogenetic Tools in <i>Caenorhabditis elegans</i> (2023)
  • Author(s): Oda Shigekazu、Sato-Ebine Emi、Nakamura Akinobu、Kimura Koutarou D.、Aoki Kazuhiro
  • Journal Title: ACS Synthetic Biology Volume: 12 Pages: 700～708
  • DOI: 10.1021/acssynbio.2c00461
  • Peer Reviewed
• [Journal Article] Impaired factor V?related anticoagulant mechanisms and deep vein thrombosis associated with A2086D and W1920R mutations (2023)
  • Author(s): Shimonishi Naruto、Ogiwara Kenichi、Yoshida Junko、Horie Kyoji、Nakajima Yuto、Furukawa Shoko、Takeyama Masahiro、Nogami Keiji
  • Journal Title: Blood Advances Volume: 7 Pages: 2831～2842
  • DOI: 10.1182/bloodadvances.2022008918
  • Peer Reviewed
• [Journal Article] Decoding cellular deformation from pseudo-simultaneously observed Rho GTPase activities (2023)
  • Author(s): Kunida Katsuyuki、Takagi Nobuhiro、Aoki Kazuhiro、Ikeda Kazushi、Nakamura Takeshi、Sakumura Yuichi
  • Journal Title: Cell Reports Volume: 42 Pages: 112071～112071
  • DOI: 10.1016/j.celrep.2023.112071
  • Peer Reviewed
• [Journal Article] In vivo expression vector derived from anhydrobiotic tardigrade genome enables live imaging in Eutardigrada (2023)
  • Author(s): Tanaka Sae、Aoki Kazuhiro、Arakawa Kazuharu
  • Journal Title: Proceedings of the National Academy of Sciences Volume: 120 Pages: -
  • DOI: 10.1073/pnas.2216739120
  • Peer Reviewed
• [Journal Article] Deep Reinforcement Learning for Preparation of Thermal and Prethermal Quantum States (2023)
  • Author(s): Baba Shotaro Z.、Yoshioka Nobuyuki、Ashida Yuto、Sagawa Takahiro
  • Journal Title: Physical Review Applied Volume: 19 Pages: -
  • DOI: 10.1103/PhysRevApplied.19.014068
  • Peer Reviewed
• [Journal Article] Filamentous structures in the cell envelope are associated with bacteroidetes gliding machinery (2023)
  • Author(s): Shibata Satoshi、Tahara Yuhei O.、Katayama Eisaku、Kawamoto Akihiro、Kato Takayuki、Zhu Yongtao、Nakane Daisuke、Namba Keiichi、Miyata Makoto、McBride Mark J.、Nakayama Koji
  • Journal Title: Communications Biology Volume: 6 Pages: -
  • DOI: 10.1038/s42003-023-04472-3
  • Peer Reviewed
• [Journal Article] Forward-Backward Sweep Method for the System of HJB-FP Equations in Memory-Limited Partially Observable Stochastic Control (2023)
  • Author(s): Tottori Takehiro、Kobayashi Tetsuya J.
  • Journal Title: Entropy Volume: 25 Pages: 208～208
  • DOI: 10.3390/e25020208
  • Peer Reviewed
• [Journal Article] Housekeeping and excess entropy production for general nonlinear dynamics (2023)
  • Author(s): Yoshimura Kohei、Kolchinsky Artemy、Dechant Andreas、Ito Sosuke
  • Journal Title: Physical Review Research Volume: 5 Pages: -
  • DOI: 10.1103/physrevresearch.5.013017
  • Peer Reviewed
• [Journal Article] Loss of Flagella-Related Genes Enables a Nonflagellated, Fungal-Predating Bacterium To Strengthen the Synthesis of an Antifungal Weapon (2023)
  • Author(s): Xiong Dan、Yang Zixiang、He Xueting、He Weimei、Shen Danyu、Wang Lu、Lin Long、Murero Aprodisia、Minamino Tohru、Shao Xiaolong、Qian Guoliang
  • Journal Title: Microbiology Spectrum Volume: 11 Pages: -
  • DOI: 10.1128/spectrum.04149-22
  • Peer Reviewed
• [Journal Article] Quasi-two-dimensional bacterial swimming around pillars: Enhanced trapping efficiency and curvature dependence (2023)
  • Author(s): Takaha Yuki、Nishiguchi Daiki
  • Journal Title: Physical Review E Volume: 107 Pages: -
  • DOI: 10.1103/physreve.107.014602
  • Peer Reviewed
• [Journal Article] Asymptotic solutions to nonlinear Hawkes processes: A systematic classification of the steady-state solutions (2023)
  • Author(s): Kanazawa Kiyoshi、Sornette Didier
  • Journal Title: Physical Review Research Volume: 5 Pages: -
  • DOI: 10.1103/PhysRevResearch.5.013067
  • Peer Reviewed
• [Journal Article] Rational social distancing in epidemics with uncertain vaccination timing (2023)
  • Author(s): Schnyder Simon K.、Molina John J.、Yamamoto Ryoichi、Turner Matthew S.
  • Journal Title: PLOS ONE Volume: 18 Pages: e0288963-3
  • DOI: 10.1371/journal.pone.0288963
  • Peer Reviewed
• [Journal Article] Simulating Reaction Time for Eureka Effect in Visual Object Recognition Using Artificial Neural Network (2023)
  • Author(s): Hosoda Kazufumi、Seno Shigeto、Murata Tsutomu
  • Journal Title: IIAI Letters on Informatics and Interdisciplinary Research Volume: 3 Pages: 1～1
  • DOI: 10.52731/liir.v003.060
  • Peer Reviewed
• [Journal Article] Sphingomyelin metabolism underlies Ras excitability for efficient cell migration and chemotaxis (2023)
  • Author(s): Shin Da Young、Takagi Hiroaki、Hiroshima Michio、Matsuoka Satomi、Ueda Masahiro
  • Journal Title: Cell Structure and Function Volume: 48 Pages: 145～160
  • DOI: 10.1247/csf.23045
  • Peer Reviewed
• [Journal Article] Theoretical Computational Analysis Predicts Interaction Changes Due to Differences of a Single Molecule in DNA (2022)
  • Author(s): Koseki Jun、Hirose Haruka、Konno Masamitsu、Shimamura Teppei
  • Journal Title: Applied Sciences Volume: 13 Pages: 510～510
  • DOI: 10.3390/app13010510
  • Peer Reviewed
• [Journal Article] Interference of flagellar rotation up-regulates the expression of small RNA contributing to <i>Bordetella pertussis</i> infection (2022)
  • Author(s): Hiramatsu Yukihiro、Nishida Takashi、Nugraha Dendi Krisna、Osada-Oka Mayuko、Nakane Daisuke、Imada Katsumi、Horiguchi Yasuhiko
  • Journal Title: Science Advances Volume: 8 Pages: -
  • DOI: 10.1126/sciadv.ade8971
  • Peer Reviewed
• [Journal Article] Tilt-induced polar order and topological defects in growing bacterial populations (2022)
  • Author(s): Shimaya Takuro、Takeuchi Kazumasa A
  • Journal Title: PNAS Nexus Volume: 1 Pages: -
  • DOI: 10.1093/pnasnexus/pgac269
  • Peer Reviewed
• [Journal Article] The Chemoreceptor Sensory Adaptation System Produces Coordinated Reversals of the Flagellar Motors on an Escherichia coli Cell (2022)
  • Author(s): Uchida Yumiko、Hamamoto Tatsuki、Che Yong-Suk、Takahashi Hiroto、Parkinson John S.、Ishijima Akihiko、Fukuoka Hajime
  • Journal Title: Journal of Bacteriology Volume: 204 Pages: -
  • DOI: 10.1128/jb.00278-22
  • Peer Reviewed
• [Journal Article] LapTrack: linear assignment particle tracking with tunable metrics (2022)
  • Author(s): Fukai Yohsuke T、Kawaguchi Kyogo
  • Journal Title: Bioinformatics Volume: 39 Pages: -
  • DOI: 10.1093/bioinformatics/btac799
  • Peer Reviewed
• [Journal Article] cGMP dynamics that underlies thermosensation in temperature-sensing neuron regulates thermotaxis behavior in C. elegans (2022)
  • Author(s): Aok Ichiro、Shiota Makoto、Tsukada Yuki、Nakano Shunji、Mori Ikue
  • Journal Title: PLOS ONE Volume: 17 Pages: e0278343
  • DOI: 10.1371/journal.pone.0278343
  • Peer Reviewed
• [Journal Article] Interscale entanglement production in a quantum system simulating classical chaos (2022)
  • Author(s): Haga Taiki、Sasa Shin-ich
  • Journal Title: Journal of Statistical Mechanics: Theory and Experiment Volume: 2022 Pages: 123102～123102
  • DOI: 10.1088/1742-5468/aca2a1
  • Peer Reviewed
• [Journal Article] Comparison of CRISPR-Cas9-mediated megabase-scale genome deletion methods in mouse embryonic stem cells (2022)
  • Author(s): Miyata Masayuki、Yoshida Junko、Takagishi Itsuki、Horie Kyoji
  • Journal Title: DNA Research Volume: 30 Pages: -
  • DOI: 10.1093/dnares/dsac045
  • Peer Reviewed
• [Journal Article] Self‐Assembled Micro‐Sized Hexagons Built from Short DNA in a Crowded Environment (2022)
  • Author(s): Makino Tetsunao、Nakane Daisuke、Tanaka Makiko
  • Journal Title: ChemBioChem Volume: 23 Pages: -
  • DOI: 10.1002/cbic.202200360
  • Peer Reviewed
• [Journal Article] Gradual differentiation uncoupled from cell cycle exit generates heterogeneity in the epidermal stem cell layer (2022)
  • Author(s): Cockburn Katie、Annusver Karl、Gonzalez David G.、Ganesan Smirthy、May Dennis P.、Mesa Kailin R.、Kawaguchi Kyogo、Kasper Maria、Greco Valentina
  • Journal Title: Nature Cell Biology Volume: 24 Pages: 1692～1700
  • DOI: 10.1038/s41556-022-01021-8
  • Peer Reviewed
• [Journal Article] Memory-Limited Partially Observable Stochastic Control and Its Mean-Field Control Approach (2022)
  • Author(s): Tottori Takehiro、Kobayashi Tetsuya J.
  • Journal Title: Entropy Volume: 24 Pages: 1599～1599
  • DOI: 10.3390/e24111599
  • Peer Reviewed
• [Journal Article] Activation mechanism of the bacterial flagellar dual-fuel protein export engine (2022)
  • Author(s): Minamino Tohru、Kinoshita Miki、Morimoto Yusuke V.、Namba Keiichi
  • Journal Title: Biophysics and Physicobiology Volume: 19 Pages: -
  • DOI: 10.2142/biophysico.bppb-v19.0046
  • Peer Reviewed
• [Journal Article] Quasi-static Decomposition and the Gibbs Factorial in Small Thermodynamic Systems (2022)
  • Author(s): Sasa Shin-ichi、Hiura Ken、Nakagawa Naoko、Yoshida Akira
  • Journal Title: Journal of Statistical Physics Volume: 189 Pages: -
  • DOI: 10.1007/s10955-022-02991-7
  • Peer Reviewed
• [Journal Article] An explainable deep learning-based algorithm with an attention mechanism for predicting the live birth potential of mouse embryos (2022)
  • Author(s): Tokuoka Yuta、Yamada Takahiro G.、Mashiko Daisuke、Ikeda Zenki、Kobayashi Tetsuya J.、Yamagata Kazuo、Funahashi Akira
  • Journal Title: Artificial Intelligence in Medicine Volume: 134 Pages: 102432～102432
  • DOI: 10.1016/j.artmed.2022.102432
  • Peer Reviewed
• [Journal Article] Tracing the developmental origin of tissue stem cells (2022)
  • Author(s): Morita Ritsuko、Fujiwara Hironobu
  • Journal Title: Development, Growth &amp; Differentiation Volume: 64 Pages: 566～576
  • DOI: 10.1111/dgd.12816
  • Peer Reviewed
• [Journal Article] Cytoplasmic delivery of siRNA using human-derived membrane penetration-enhancing peptide (2022)
  • Author(s): Nakamura Momoko、Fujiwara Kei、Doi Nobuhide
  • Journal Title: Journal of Nanobiotechnology Volume: 20 Pages: -
  • DOI: 10.1186/s12951-022-01667-4
  • Peer Reviewed
• [Journal Article] Controlling the Periodicity of a Reaction?Diffusion Wave in Artificial Cells by a Two-Way Energy Supplier (2022)
  • Author(s): Takada Sakura、Yoshinaga Natsuhiko、Doi Nobuhide、Fujiwara Kei
  • Journal Title: ACS Nano Volume: 16 Pages: 16853～16861
  • DOI: 10.1021/acsnano.2c06756
  • Peer Reviewed
• [Journal Article] Information-geometric structure for chemical thermodynamics: An explicit construction of dual affine coordinates (2022)
  • Author(s): Ohga Naruo、Ito Sosuke
  • Journal Title: Physical Review E Volume: 106 Pages: -
  • DOI: 10.1103/physreve.106.044131
  • Peer Reviewed
• [Journal Article] Riemannian geometry of optimal driving and thermodynamic length and its application to chemical reaction networks (2022)
  • Author(s): Loutchko Dimitri、Sughiyama Yuki、Kobayashi Tetsuya J.
  • Journal Title: Physical Review Research Volume: 4 Pages: -
  • DOI: 10.1103/physrevresearch.4.043049
  • Peer Reviewed
• [Journal Article] Application of time lags between light and temperature cycles for growth control based on the circadian clock of Lactuca sativa L. seedlings (2022)
  • Author(s): Masuda Kosaku、Yamada Tatsuya、Kagawa Yuya、Fukuda Hirokazu
  • Journal Title: Frontiers in Plant Science Volume: 13 Pages: -
  • DOI: 10.3389/fpls.2022.994555
  • Peer Reviewed
• [Journal Article] Cell-Size Space Regulates the Behavior of Confined Polymers: From Nano- and Micromaterials Science to Biology (2022)
  • Author(s): Yanagisawa Miho、Watanabe Chiho、Yoshinaga Natsuhiko、Fujiwara Kei
  • Journal Title: Langmuir Volume: 38 Pages: 11811～11827
  • DOI: 10.1021/acs.langmuir.2c01397
  • Peer Reviewed
• [Journal Article] Scaling and spontaneous symmetry restoring of topological defect dynamics in liquid crystal (2022)
  • Author(s): Zushi Yohei、Takeuchi Kazumasa A.
  • Journal Title: Proceedings of the National Academy of Sciences Volume: 119 Pages: -
  • DOI: 10.1073/pnas.2207349119
  • Peer Reviewed
• [Journal Article] A genetically encoded far‐red fluorescent calcium ion biosensor derived from a biliverdin‐binding protein (2022)
  • Author(s): Hashizume Rina、Fujii Hajime、Mehta Sohum、Ota Keisuke、Qian Yong、Zhu Wenchao、Drobizhev Mikhail、Nasu Yusuke、Zhang Jin、Bito Haruhiko、Campbell Robert E.
  • Journal Title: Protein Science Volume: 31 Pages: -
  • DOI: 10.1002/pro.4440
  • Peer Reviewed
• [Journal Article] A feedback loop between lamellipodial extension and HGF-ERK signaling specifies leader cells during collective cell migration (2022)
  • Author(s): Hino Naoya、Matsuda Kimiya、Jikko Yuya、Maryu Gembu、Sakai Katsuya、Imamura Ryu、Tsukiji Shinya、Aoki Kazuhiro、Terai Kenta、Hirashima Tsuyoshi、Trepat Xavier、Matsuda Michiyuki
  • Journal Title: Developmental Cell Volume: 57 Pages: 2290～2304.e7
  • DOI: 10.1016/j.devcel.2022.09.003
  • Peer Reviewed
• [Journal Article] Phase Growth with Heat Diffusion in a Stochastic Lattice Model (2022)
  • Author(s): Hiraizumi Mao、Ohta Hiroki、Sasa Shin-ichi
  • Journal Title: Journal of Statistical Physics Volume: 189 Pages: -
  • DOI: 10.1007/s10955-022-02990-8
  • Peer Reviewed
• [Journal Article] Reconstitution of microtubule into GTP-responsive nanocapsules (2022)
  • Author(s): Uchida Noriyuki、Kohata Ai、Okuro Kou、Cardellini Annalisa、Lionello Chiara、Zizzi Eric A.、Deriu Marco A.、Pavan Giovanni M.、Tomishige Michio、Hikima Takaaki、Aida Takuzo
  • Journal Title: Nature Communications Volume: 13 Pages: -
  • DOI: 10.1038/s41467-022-33156-5
  • Peer Reviewed
• [Journal Article] Hessian geometry of nonequilibrium chemical reaction networks and entropy production decompositions (2022)
  • Author(s): Kobayashi Tetsuya J.、Loutchko Dimitri、Kamimura Atsushi、Sughiyama Yuki
  • Journal Title: Physical Review Research Volume: 4 Pages: -
  • DOI: 10.1103/physrevresearch.4.033208
  • Peer Reviewed
• [Journal Article] Genetic screens identified dual roles of microtubule-associated serine threonine kinase and CREB within a single thermosensory neuron in the regulation of <i>Caenorhabditis elegans</i> thermotaxis behavior (2022)
  • Author(s): Nakano Shunji、Nakayama Airi、Kuroyanagi Hiroo、Yamashiro Riku、Tsukada Yuki、Mori Ikue
  • Journal Title: G3 Genes|Genomes|Genetics Volume: 12 Pages: -
  • DOI: 10.1093/g3journal/jkac248
  • Peer Reviewed
• [Journal Article] An analysis modality for vascular structures combining tissue-clearing technology and topological data analysis (2022)
  • Author(s): Takahashi Kei、Abe Ko、Kubota Shimpei I.、Fukatsu Noriaki、Morishita Yasuyuki、Yoshimatsu Yasuhiro、Hirakawa Satoshi、Kubota Yoshiaki、Watabe Tetsuro、Ehata Shogo、Ueda Hiroki R.、Shimamura Teppei、Miyazono Kohei
  • Journal Title: Nature Communications Volume: 13 Pages: -
  • DOI: 10.1038/s41467-022-32848-2
  • Peer Reviewed
• [Journal Article] Chemical thermodynamics for growing systems (2022)
  • Author(s): Sughiyama Yuki、Kamimura Atsushi、Loutchko Dimitri、Kobayashi Tetsuya J.
  • Journal Title: Physical Review Research Volume: 4 Pages: -
  • DOI: 10.1103/physrevresearch.4.033191
  • Peer Reviewed
• [Journal Article] Stress-dependent cell stiffening by tardigrade tolerance proteins that reversibly form a filamentous network and gel (2022)
  • Author(s): Tanaka Akihiro、Nakano Tomomi、Watanabe Kento、Masuda Kazutoshi、Honda Gen、Kamata Shuichi、Yasui Reitaro、Kozuka-Hata Hiroko、Watanabe Chiho、Chinen Takumi、Kitagawa Daiju、Sawai Satoshi、Oyama Masaaki、Yanagisawa Miho、Kunieda Takekazu
  • Journal Title: PLOS Biology Volume: 20 Pages: e3001780
  • DOI: 10.1371/journal.pbio.3001780
  • Peer Reviewed
• [Journal Article] Probing the rules of cell coordination in live tissues by interpretable machine learning based on graph neural networks (2022)
  • Author(s): Yamamoto Takaki、Cockburn Katie、Greco Valentina、Kawaguchi Kyogo
  • Journal Title: PLOS Computational Biology Volume: 18 Pages: e1010477
  • DOI: 10.1371/journal.pcbi.1010477
  • Peer Reviewed
• [Journal Article] PHi-C2: interpreting Hi-C data as the dynamic 3D genome state (2022)
  • Author(s): Shinkai Soya、Itoga Hiroya、Kyoda Koji、Onami Shuichi
  • Journal Title: Bioinformatics Volume: 38 Pages: 4984～4986
  • DOI: 10.1093/bioinformatics/btac613
  • Peer Reviewed
• [Journal Article] Competition between cell types under cell cycle regulation with apoptosis (2022)
  • Author(s): Li Jintao、Schnyder Simon K.、Turner Matthew S.、Yamamoto Ryoichi
  • Journal Title: Physical Review Research Volume: 4 Pages: -
  • DOI: 10.1103/PhysRevResearch.4.033156
  • Peer Reviewed
• [Journal Article] Unique extension of the maximum entropy principle to phase coexistence in heat conduction (2022)
  • Author(s): Nakagawa Naoko、Sasa Shin-ichi
  • Journal Title: Physical Review Research Volume: 4 Pages: -
  • DOI: 10.1103/physrevresearch.4.033155
  • Peer Reviewed
• [Journal Article] Geometric decomposition of entropy production into excess, housekeeping, and coupling parts (2022)
  • Author(s): Dechant Andreas、Sasa Shin-ichi、Ito Sosuke
  • Journal Title: Physical Review E Volume: 106 Pages: -
  • DOI: 10.1103/physreve.106.024125
  • Peer Reviewed
• [Journal Article] Conserved GYXLI Motif of FlhA Is Involved in Dynamic Domain Motions of FlhA Required for Flagellar Protein Export (2022)
  • Author(s): Minamino Tohru、Kinoshita Miki、Inoue Yumi、Kitao Akio、Namba Keiichi
  • Journal Title: Microbiology Spectrum Volume: 10 Pages: -
  • DOI: 10.1128/spectrum.01110-22
  • Peer Reviewed
• [Journal Article] Kinetic derivation of the Hessian geometric structure in chemical reaction networks (2022)
  • Author(s): Kobayashi Tetsuya J.、Loutchko Dimitri、Kamimura Atsushi、Sughiyama Yuki
  • Journal Title: Physical Review Research Volume: 4 Pages: -
  • DOI: 10.1103/physrevresearch.4.033066
  • Peer Reviewed
• [Journal Article] Hessian geometric structure of chemical thermodynamic systems with stoichiometric constraints (2022)
  • Author(s): Sughiyama Yuki、Loutchko Dimitri、Kamimura Atsushi、Kobayashi Tetsuya J.
  • Journal Title: Physical Review Research Volume: 4 Pages: -
  • DOI: 10.1103/physrevresearch.4.033065
  • Peer Reviewed
• [Journal Article] Comparative Study of Repertoire Classification Methods Reveals Data Efficiency of k-mer Feature Extraction (2022)
  • Author(s): Katayama Yotaro、Kobayashi Tetsuya J.
  • Journal Title: Frontiers in Immunology Volume: 13 Pages: -
  • DOI: 10.3389/fimmu.2022.797640
  • Peer Reviewed
• [Journal Article] Quantum hydrodynamics from local thermal pure states (2022)
  • Author(s): Tsutsui Shoichiro、Hongo Masaru、Sato Shintaro、Sagawa Takahiro
  • Journal Title: Physical Review Research Volume: 4 Pages: -
  • DOI: 10.1103/physrevresearch.4.033059
  • Peer Reviewed
• [Journal Article] Machine Learning Approaches to TCR Repertoire Analysis (2022)
  • Author(s): Katayama Yotaro、Yokota Ryo、Akiyama Taishin、Kobayashi Tetsuya J.
  • Journal Title: Frontiers in Immunology Volume: 13 Pages: -
  • DOI: 10.3389/fimmu.2022.858057
  • Peer Reviewed
• [Journal Article] Cell shape controls rheotaxis in small parasitic bacteria (2022)
  • Author(s): Nakane Daisuke、Kabata Yoshiki、Nishizaka Takayuki
  • Journal Title: PLOS Pathogens Volume: 18 Pages: e1010648
  • DOI: 10.1371/journal.ppat.1010648
  • Peer Reviewed
• [Journal Article] Calcium sparks enhance the tissue fluidity within epithelial layers and promote apical extrusion of transformed cells (2022)
  • Author(s): Kuromiya Keisuke et al.
  • Journal Title: Cell Reports Volume: 40 Pages: 111078～111078
  • DOI: 10.1016/j.celrep.2022.111078
  • Peer Reviewed
• [Journal Article] Active colloid with externally induced periodic bipolar motility and its cooperative motion (2022)
  • Author(s): Kato Airi N.、Takeuchi Kazumasa A.、Sano Masaki
  • Journal Title: Soft Matter Volume: 18 Pages: 5435～5445
  • DOI: 10.1039/d2sm00363e
  • Peer Reviewed
• [Journal Article] The trunk?tail junctional region in <i>Ciona</i> larvae autonomously expresses tail-beating bursts at ?20?second intervals (2022)
  • Author(s): Hara Takashi、Hasegawa Shuya、Iwatani Yasushi、Nishino Atsuo S.
  • Journal Title: Journal of Experimental Biology Volume: 225 Pages: -
  • DOI: 10.1242/jeb.243828
  • Peer Reviewed
• [Journal Article] A highly photostable and bright green fluorescent protein (2022)
  • Author(s): Hirano Masahiko、Ando Ryoko、Shimozono Satoshi、Sugiyama Mayu、Takeda Noriyo、Kurokawa Hiroshi、Deguchi Ryusaku、Endo Kazuki、Haga Kei、Takai-Todaka Reiko、Inaura Shunsuke、Matsumura Yuta、Hama Hiroshi、Okada Yasushi、Fujiwara Takahiro、Morimoto Takuya、Katayama Kazuhiko、Miyawaki Atsushi
  • Journal Title: Nature Biotechnology Volume: 40 Pages: 1132～1142
  • DOI: 10.1038/s41587-022-01278-2
  • Peer Reviewed
• [Journal Article] c-Src?mediated phosphorylation and activation of kinesin KIF1C promotes elongation of invadopodia in cancer cells (2022)
  • Author(s): Saji Takeshi、Nishita Michiru、Ikeda Kazuho、Endo Mitsuharu、Okada Yasushi、Minami Yasuhiro
  • Journal Title: Journal of Biological Chemistry Volume: 298 Pages: 102090～102090
  • DOI: 10.1016/j.jbc.2022.102090
  • Peer Reviewed
• [Journal Article] Thermodynamic role of main reaction pathway and multi-body information flow in membrane transport (2022)
  • Author(s): Yoshida Satoshi、Okada Yasushi、Muneyuki Eiro、Ito Sosuke
  • Journal Title: Physical Review Research Volume: 4 Pages: -
  • DOI: 10.1103/physrevresearch.4.023229
  • Peer Reviewed
• [Journal Article] Exceptional mode topological surface laser (2022)
  • Author(s): Sone Kazuki、Ashida Yuto、Sagawa Takahiro
  • Journal Title: Physical Review B Volume: 105 Pages: -
  • DOI: 10.1103/physrevb.105.235426
  • Peer Reviewed
• [Journal Article] Characterizing the Asymmetry in Hardness between Synthesis and Destruction of Heteropolymers (2022)
  • Author(s): Kobayashi Ikumi、Sasa Shin-ichi
  • Journal Title: Physical Review Letters Volume: 128 Pages: -
  • DOI: 10.1103/physrevlett.128.247801
  • Peer Reviewed
• [Journal Article] Topological synchronization of coupled nonlinear oscillators (2022)
  • Author(s): Sone Kazuki、Ashida Yuto、Sagawa Takahiro
  • Journal Title: Physical Review Research Volume: 4 Pages: -
  • DOI: 10.1103/physrevresearch.4.023211
  • Peer Reviewed
• [Journal Article] Mode selection mechanism in traveling and standing waves revealed by Min wave reconstituted in artificial cells (2022)
  • Author(s): Takada Sakura、Yoshinaga Natsuhiko、Doi Nobuhide、Fujiwara Kei
  • Journal Title: Science Advances Volume: 8 Pages: -
  • DOI: 10.1126/sciadv.abm8460
  • Peer Reviewed
• [Journal Article] A mechanism with severing near barbed ends and annealing explains structure and dynamics of dendritic actin networks (2022)
  • Author(s): Holz Danielle、Hall Aaron R、Usukura Eiji、Yamashiro Sawako、Watanabe Naoki、Vavylonis Dimitrios
  • Journal Title: eLife Volume: 11 Pages: -
  • DOI: 10.7554/eLife.69031
  • Peer Reviewed
• [Journal Article] Macroscopic Stability of Time Evolution of Gibbs Measures (2022)
  • Author(s): Lefevere Rapha?l、Sasa Shin-ichi
  • Journal Title: Journal of Statistical Physics Volume: 188 Pages: -
  • DOI: 10.1007/s10955-022-02943-1
  • Peer Reviewed
• [Journal Article] Regulation of spermatogenic stem cell homeostasis by mitogen competition in an open niche microenvironment (2022)
  • Author(s): Kitadate Yu、Yoshida Shosei
  • Journal Title: Genes &amp; Genetic Systems Volume: 97 Pages: 15～25
  • DOI: 10.1266/ggs.21-00062
  • Peer Reviewed
• [Journal Article] Single-nucleosome imaging reveals steady-state motion of interphase chromatin in living human cells (2022)
  • Author(s): Iida Shiori、Shinkai Soya、Itoh Yuji、Tamura Sachiko、Kanemaki Masato T.、Onami Shuichi、Maeshima Kazuhiro
  • Journal Title: Science Advances Volume: 8 Pages: -
  • DOI: 10.1126/sciadv.abn5626
  • Peer Reviewed
• [Journal Article] Asynchronous division at 4?8-cell stage of preimplantation embryos affects live birth through ICM/TE differentiation (2022)
  • Author(s): Mashiko Daisuke、Ikeda Zenki、Tokoro Mikiko、Hatano Yu、Yao Tatsuma、Kobayashi Tetsuya J.、Fukunaga Noritaka、Asada Yoshimasa、Yamagata Kazuo
  • Journal Title: Scientific Reports Volume: 12 Pages: -
  • DOI: 10.1038/s41598-022-13646-8
  • Peer Reviewed
• [Journal Article] In utero electroporation and cranial window implantation for in vivo wide-field two-photon calcium imaging using G-CaMP9a transgenic mice (2022)
  • Author(s): Sakamoto Masayuki、Ota Keisuke、Kondo Yayoi、Okamura Michiko、Fujii Hajime、Bito Haruhiko
  • Journal Title: STAR Protocols Volume: 3 Pages: 101421～101421
  • DOI: 10.1016/j.xpro.2022.101421
  • Peer Reviewed
• [Journal Article] The Structural Rule Distinguishing a Superfold: A Case Study of Ferredoxin Fold and the Reverse Ferredoxin Fold (2022)
  • Author(s): Nishina Takumi、Nakajima Megumi、Sasai Masaki、Chikenji George
  • Journal Title: Molecules Volume: 27 Pages: 3547～3547
  • DOI: 10.3390/molecules27113547
  • Peer Reviewed
• [Journal Article] MARK2 regulates directed cell migration through modulation of myosin II contractility and focal adhesion organization (2022)
  • Author(s): Pasapera Ana M.、Heissler Sarah M.、Eto Masumi、Nishimura Yukako、Fischer Robert S.、Thiam Hawa R.、Waterman Clare M.
  • Journal Title: Current Biology Volume: 32 Pages: 2704～2718.e6
  • DOI: 10.1016/j.cub.2022.04.088
  • Peer Reviewed
• [Journal Article] Thermosynechococcus switches the direction of phototaxis by a c-di-GMP-dependent process with high spatial resolution (2022)
  • Author(s): Nakane Daisuke、Enomoto Gen、B?hre Heike、Hirose Yuu、Wilde Annegret、Nishizaka Takayuki
  • Journal Title: eLife Volume: 11 Pages: -
  • DOI: 10.7554/eLife.73405
  • Peer Reviewed
• [Journal Article] Design Principles of the Rotary Type 9 Secretion System (2022)
  • Author(s): Trivedi Abhishek、Gosai Jitendrapuri、Nakane Daisuke、Shrivastava Abhishek
  • Journal Title: Frontiers in Microbiology Volume: 13 Pages: -
  • DOI: 10.3389/fmicb.2022.845563
  • Peer Reviewed
• [Journal Article] Nonlinear master relation in microscopic mechanical response of semiflexible biopolymer networks (2022)
  • Author(s): Honda N、Shiraki K、van Esterik F、Inokuchi S、Ebata H、Mizuno D
  • Journal Title: New Journal of Physics Volume: 24 Pages: 053031～053031
  • DOI: 10.1088/1367-2630/ac6902
  • Peer Reviewed
• [Journal Article] Insight Into Distinct Functional Roles of the Flagellar ATPase Complex for Flagellar Assembly in Salmonella (2022)
  • Author(s): Minamino Tohru、Kinoshita Miki、Namba Keiichi
  • Journal Title: Frontiers in Microbiology Volume: 13 Pages: -
  • DOI: 10.3389/fmicb.2022.864178
  • Peer Reviewed
• [Journal Article] Generation of dynamic three-dimensional genome structure through phase separation of chromatin (2022)
  • Author(s): Fujishiro Shin、Sasai Masaki
  • Journal Title: Proceedings of the National Academy of Sciences Volume: 119 Pages: -
  • DOI: 10.1073/pnas.2109838119
  • Peer Reviewed
• [Journal Article] Exact Solution to Two-Body Financial Dealer Model: Revisited from the Viewpoint of Kinetic Theory (2022)
  • Author(s): Kanazawa Kiyoshi、Takayasu Hideki、Takayasu Misako
  • Journal Title: Journal of Statistical Physics Volume: 190 Pages: -
  • DOI: 10.1007/s10955-022-03022-1
  • Peer Reviewed
• [Journal Article] Quantitative live-cell imaging of GPCR downstream signaling dynamics (2022)
  • Author(s): Tany Ryosuke、Goto Yuhei、Kondo Yohei、Aoki Kazuhiro
  • Journal Title: Biochemical Journal Volume: 479 Pages: 883～900
  • DOI: 10.1042/BCJ20220021
  • Peer Reviewed
• [Journal Article] Quantum Fluctuation Theorem under Quantum Jumps with Continuous Measurement and Feedback (2022)
  • Author(s): Yada Toshihiro、Yoshioka Nobuyuki、Sagawa Takahiro
  • Journal Title: Physical Review Letters Volume: 128 Pages: -
  • DOI: 10.1103/physrevlett.128.170601
  • Peer Reviewed
• [Journal Article] XY model for cascade transfer (2022)
  • Author(s): Tanogami Tomohiro、Sasa Shin-ichi
  • Journal Title: Physical Review Research Volume: 4 Pages: -
  • DOI: 10.1103/physrevresearch.4.l022015
• [Presentation] Molecular a;Functional Analysis of;myosin with chiral activity (2023)
  • Author(s): 伊藤 光二
  • Organizer: 2023 Ajou-Chiba Joint Symposium Chiba University
  • Invited
• [Presentation] Molecular and Functional Analysis of myosin with chiral activity (2023)
  • Author(s): 伊藤 光二
  • Organizer: Yamada Conference LXXV: Origin of left‐right asymmetry in animals
  • Invited
• [Presentation] 機械学習・人工知能を活用したライブセルイメージング (2023)
  • Author(s): 岡田 康志
  • Organizer: 第128回日本解剖学会総会・全国学術集会
  • Invited
• [Presentation] 蛍光ライブセルイメージングの限界への挑戦 (2023)
  • Author(s): 岡田 康志
  • Organizer: 大阪大学微生物病研究所アドバンストセミナー
  • Invited
• [Presentation] 蛍光ライブセルイメージングの限界への挑戦 (2023)
  • Author(s): 岡田 康志
  • Organizer: 光塾
  • Invited
• [Presentation] 場のマスター方程式を用いた非マルコフ点過程の漸近解法：非線形ホークス過程とその拡張 (2023)
  • Author(s): 金澤 輝代士
  • Organizer: 情報処理学会北海道支部主催講演会
  • Invited
• [Presentation] 量子測定の基礎と量子熱力学への応用 (2023)
  • Author(s): 沙川 貴大
  • Organizer: 量子ICTフォーラム 量子計測・センシング基礎講座
  • Invited
• [Presentation] 量子連続制御下の情報熱力学 (2023)
  • Author(s): 沙川 貴大
  • Organizer: KEK 素核研・物構研 連携研究会
  • Invited
• [Presentation] Three Approaches to Quantum Thermodynamics (2023)
  • Author(s): 沙川 貴大
  • Organizer: 量子情報と量子基礎論の諸側面
  • Invited
• [Presentation] 生命とは何か、何がわかれば嬉しいのだろうか：人工細胞、人工生態系、人工知能を例に (2023)
  • Author(s): 細田 一史
  • Organizer: 第16回生物学基礎論研究会
  • Invited
• [Presentation] Force transmission via dynamic stretching of Talin as revealed by live-cell single-molecule imaging (2023)
  • Author(s): 山城 佐和子
  • Organizer: American Physical Society March Meeting
  • Invited
• [Presentation] リソース制約部分観測最適制御理論：生体情報処理の理解にむけた自由エネルギー原理とは違うルート (2023)
  • Author(s): 小林 徹也
  • Organizer: 「あいまい脳」 班会議
  • Invited
• [Presentation] Noise generation by sphingomyelin metabolism optimizes Ras excitability for cell migration (2023)
  • Author(s): 松岡 里実
  • Organizer: Gordon Research Conference: Directed Cell Migration
  • Invited
• [Presentation] "Telescope model” for coordinated organ morphogenesis and stem cell formation (2023)
  • Author(s): 森田 梨津子
  • Organizer: The 4th RIKEN BDR-Kobe University Joint Symposium
  • Invited
• [Presentation] アクティブ乱流の気持ち：如何にして秩序化し、如何にして乱れるか？ (2023)
  • Author(s): 西口 大貴
  • Organizer: 統計物理学懇談会（第10回）
  • Invited
• [Presentation] Route from vortex order to active turbulence (2023)
  • Author(s): 西口 大貴
  • Organizer: Japan-France joint seminar "Physics of dense and active disordered materials"
  • Invited
• [Presentation] Quantitative analysis of cell cycle by live-cell imaging and optogenetics (2023)
  • Author(s): 青木 一洋
  • Organizer: The 3rd NINS-Princeton Joint Symposium EMERGING LIFE SCIENCES
  • Invited
• [Presentation] 蛍光プローブと光遺伝学を用いた細胞周期の定量解析 (2023)
  • Author(s): 青木 一洋
  • Organizer: イメージングブートキャンプ2022
  • Invited
• [Presentation] 細胞内シグナル伝達系の可視化と光操作 (2023)
  • Author(s): 青木 一洋
  • Organizer: EVIDENT Creative Forum 2023 Online 『次世代研究者と語る、これからのライブイメージング - New ERA of Live Cell Imaging with EVIDENT -』
  • Invited
• [Presentation] Topology and active matter physics in cultured nematic cells (2023)
  • Author(s): 川口 喬吾
  • Organizer: The University of Cambridge Morphogenesis Seminar Series
  • Invited
• [Presentation] On the origin of appetite: GLWamide in jellyfish represents an ancestral satiety neuropeptide (2023)
  • Author(s): 谷本 拓
  • Organizer: 第19回国際シンポジウム”味覚嗅覚の分子神経機構”
  • Invited
• [Presentation] 単一神経細胞内のシナプスの多様性とその制御 (2023)
  • Author(s): 谷本 拓
  • Organizer: 2022年度生理研研究会 ナノ・メゾスケールから捉えるシナプス制御機構の新展開
  • Invited
• [Presentation] Bacterial Glass (2023)
  • Author(s): 竹内 一将
  • Organizer: Japan-France joint seminar "Physics of dense and active disordered materials"
  • Invited
• [Presentation] 細菌のドリル戦車 (2023)
  • Author(s): 中根 大介
  • Organizer: 第96回 日本細菌学会総会
  • Invited
• [Presentation] 非熱的にゆらぐ細胞内環境に最適化する生体分子モーター (2023)
  • Author(s): 有賀 隆行
  • Organizer: Workshop OT 2023 最適輸送とその周辺 ? 機械学習から熱力学的最適化まで
  • Invited
• [Presentation] Did the tape run twice? Morphogenesis of amoebozoa Dictyostelium - cell polarity, cell migration and cell rearrangement (2023)
  • Author(s): 澤井 哲
  • Organizer: The 3rd NINS-Princeton Joint Symposium EMERGING LIFE SCIENCES
  • Invited
• [Presentation] 細胞・器官にキラリティを誘導するミオシンが創発するアクチン・キラリティリング (2022)
  • Author(s): 伊藤 光二
  • Organizer: 第11回分子モーター討論会
  • Invited
• [Presentation] Functional analysis of plant-specific myosin XIs (2022)
  • Author(s): 伊藤 光二
  • Organizer: ABA, APPA & TBS JOINT CONGRESS 202
  • Invited
• [Presentation] 植物成長とミオシン (2022)
  • Author(s): 伊藤 光二
  • Organizer: 第250回有機エレクトロニクス材料研究会
  • Invited
• [Presentation] Possible applications of optimal transport: From biological data processing to thermodynamics (2022)
  • Author(s): 伊藤 創祐
  • Organizer: Sendai 2022, An Update on Molecular Machines:Open Challenges and New Perspectives
  • Invited
• [Presentation] Information-geometric speed limit for biochemical information processing (2022)
  • Author(s): 伊藤 創祐
  • Organizer: The 74th Annual Meeting of the Japan Society for Cell Biology
  • Invited
• [Presentation] Optimal transport theory as a geometric theory of non-equilibrium thermodynamics (2022)
  • Author(s): 伊藤 創祐
  • Organizer: StatPhys Seminar @ UTokyoHongo
  • Invited
• [Presentation] ライブイメージングの限界を超える (2022)
  • Author(s): 岡田 康志
  • Organizer: 北海道大学ニコンイメージングセンター学術講演会
  • Invited
• [Presentation] ライブイメージングの限界を超える (2022)
  • Author(s): 岡田 康志
  • Organizer: 順天堂大学イメージングセンターキックオフシンポジウム
  • Invited
• [Presentation] 超解像・一分子顕微鏡技術を用いた細胞内分子動態の計測 (2022)
  • Author(s): 岡田 康志
  • Organizer: 薬物動態学会第37回年会
  • Invited
• [Presentation] 基礎研究と製品開発のニーズとシーズ (2022)
  • Author(s): 岡田 康志
  • Organizer: T-Gex研究成果エキシビション
  • Invited
• [Presentation] 超解像技術と蛍光寿命を用いた最新バイオイメージング (2022)
  • Author(s): 岡田 康志
  • Organizer: ライカオンラインセミナー
  • Invited
• [Presentation] 細胞や分子を見て、判るためのイメージング (2022)
  • Author(s): 岡田 康志
  • Organizer: 奈良県立医大特別講義
  • Invited
• [Presentation] シン・ライブセルイメージング (2022)
  • Author(s): 岡田 康志
  • Organizer: 健都イメージングサポート拠点キックオフシンポジウム『シン・ミクロの世界』
  • Invited
• [Presentation] 4次元イメージング (2022)
  • Author(s): 岡田 康志
  • Organizer: 第33回細胞生物学ワークショップ
  • Invited
• [Presentation] 分子・細胞のライブイメージングからバイオDXへ (2022)
  • Author(s): 岡田 康志
  • Organizer: 生物工学懇話会
  • Invited
• [Presentation] 実験自動化からバイオDXへ (2022)
  • Author(s): 岡田 康志
  • Organizer: 情報計算化学生物学会第433回講演会
  • Invited
• [Presentation] Toward super spatiotemporal resolution fluorescence microscope for live imaging of molecules and cells (2022)
  • Author(s): 岡田 康志
  • Organizer: OPIC, ALPS, 2022
  • Invited
• [Presentation] Unique Molecular Properties of Cardiac Myosin Essential for Heart Contraction (2022)
  • Author(s): 茅 元司
  • Organizer: World Congress of Biomechanics
  • Invited
• [Presentation] 情報理論と非平衡統計物理の融合 (2022)
  • Author(s): 沙川 貴大
  • Organizer: 学振R025委員会フォーラム
  • Invited
• [Presentation] On the existence of complete thermodynamic potentials for quantum systems (2022)
  • Author(s): 沙川 貴大
  • Organizer: Quantum resources: from mathematical foundations to operational characterization
  • Invited
• [Presentation] 情報処理の熱力学 (2022)
  • Author(s): 沙川 貴大
  • Organizer: 人工知能学会 SIGNAC 第37回研究会
  • Invited
• [Presentation] 情報熱力学入門 (2022)
  • Author(s): 沙川 貴大
  • Organizer: 第11回分子モーター討論会
  • Invited
• [Presentation] Quantum Fluctuation Theorems under Measurement and Feedback (2022)
  • Author(s): 沙川 貴大
  • Organizer: Dynamic Days Asia Pacific 12
  • Invited
• [Presentation] Thermodynamics of information (2022)
  • Author(s): 沙川 貴大
  • Organizer: ICTP-KIAS School on Statistical Physics for Life Sciences
  • Invited
• [Presentation] Quantum Fluctuation Theorem with Continuous Measurement and Feedback (2022)
  • Author(s): 沙川 貴大
  • Organizer: Stochastic Thermodynamics: Recent Developments
  • Invited
• [Presentation] Non-Hermitian and Nonlinear Topology of Active Matter (2022)
  • Author(s): 沙川 貴大
  • Organizer: Cell, Energetics, and information: New perspectives on nonequilibrium systems
  • Invited
• [Presentation] 人工知能・人工生態・起業・クラファン (2022)
  • Author(s): 細田 一史
  • Organizer: 第7回細胞生物若手の会
  • Invited
• [Presentation] 蛍光単分子イメージングで明らかにする流動力伝達の仕組み (2022)
  • Author(s): 山城 佐和子
  • Organizer: 定量生物学の会 第十回年会
  • Invited
• [Presentation] 細胞内蛍光単分子イメージングによるアクチン線維流動力伝達機構の解明 (2022)
  • Author(s): 山城 佐和子
  • Organizer: 第11回分子モーター討論会
  • Invited
• [Presentation] Information Geometry of Equilibrium and Nonequilibrium Chemical Reaction Networks (2022)
  • Author(s): 小林 徹也
  • Organizer: Workshop on Non-equilibrium Phenomena in Physics and Biology
  • Invited
• [Presentation] T細胞系の定量生物学：発生からレパトアまで (2022)
  • Author(s): 小林 徹也
  • Organizer: 第2回ASHBi 数理ヒト生物学研究会 (MathHuB研究会)
  • Invited
• [Presentation] Chemical Thermodynamics of Growing Systems (2022)
  • Author(s): 小林 徹也
  • Organizer: ICTP-KIAS School on Statistical Physics for Life Sciences
  • Invited
• [Presentation] Cell competition in a hybrid mechanochemical model (2022)
  • Author(s): 小林 徹也
  • Organizer: 25th Anniversary Symposium of German-Japanese Joint Research Project on Nonequilibrium Statistical Physics Perspectives for Future Collaboration
  • Invited
• [Presentation] グラフ・ハイパーグラフ上のダイナミクスの情報幾何学 (2022)
  • Author(s): 小林 徹也
  • Organizer: JST数学関連3領域連携WS「情報科学と拓く新しい数理科学」
  • Invited
• [Presentation] Hessian Geometric Structure of Equilibrium and Nonequilibrium Chemical Reaction Newtworks (2022)
  • Author(s): 小林 徹也
  • Organizer: 理研 iTEMSセミナー
  • Invited
• [Presentation] Polymer physics for Hi-C data reveals rheological features of chromatin (2022)
  • Author(s): 新海 創也
  • Organizer: 第45回日本分子生物学会
  • Invited
• [Presentation] 流体力学的相互作用が駆動する3次元ゲノム組織化 (2022)
  • Author(s): 新海 創也
  • Organizer: 第45回日本分子生物学会
  • Invited
• [Presentation] "Telescope model” for coordinated organ morphogenesis and stem cell formation (2022)
  • Author(s): 森田 梨津子
  • Organizer: The 45th Annual Meeting of the Molecular Biology Society of Japan
  • Invited
• [Presentation] "Telescope model” for coordinated organ morphogenesis and stem cell formation (2022)
  • Author(s): 森田 梨津子
  • Organizer: ISRB Webinars
  • Invited
• [Presentation] 毛包発生と幹細胞誘導を支える 「テレスコープモデル」 (2022)
  • Author(s): 森田 梨津子
  • Organizer: 第73回日本皮膚科学会中部支部学術大会シンポジウム
  • Invited
• [Presentation] "Telescope model” for coordinated organ morphogenesis and stem cell formation (2022)
  • Author(s): 森田 梨津子
  • Organizer: 日本遺伝学会第94回札幌大会
  • Invited
• [Presentation] 1細胞解析から明らかにする毛包発生と幹細胞誘導のしくみ (2022)
  • Author(s): 森田 梨津子
  • Organizer: シングルセルゲノミクス研究会2022
  • Invited
• [Presentation] アクティブマター物理学：集団運動の秩序とゆらぎ (2022)
  • Author(s): 西口 大貴
  • Organizer: 第67回物性若手夏の学校
  • Invited
• [Presentation] アクティブマター物理学：集団運動の秩序, ゆらぎ, 波, かたち (2022)
  • Author(s): 西口 大貴
  • Organizer: 流体若手夏の学校2022
  • Invited
• [Presentation] ミオシンとフォルミンのクロストークがアクチンストレスファイバーの形成と収縮を制御する (2022)
  • Author(s): 西村 有香子
  • Organizer: 第60回日本生物物理学会年会
  • Invited
• [Presentation] Live-cell imaging illuminates the dynamic encoding of GPCR signaling (2022)
  • Author(s): 青木 一洋
  • Organizer: 第45回日本分子生物学会年会
  • Invited
• [Presentation] p38を介したJNKの阻害による確率的な細胞死 (2022)
  • Author(s): 青木 一洋
  • Organizer: 第3回 細胞死コロキウム
  • Invited
• [Presentation] Optical control of cell signaling with red/far-red light-responsive optogenetic tools in Caenorhabditis elegans. (2022)
  • Author(s): 青木 一洋
  • Organizer: The 8th IMCR Symposium on Endocrine and Metabolism: Beyond the Frontiers of Endocrinology & Metabolism
  • Invited
• [Presentation] Optical relaxation of actomyosin contractility (2022)
  • Author(s): 青木 一洋
  • Organizer: the 15th Asia Pacific Physics Conference (APPC15)
  • Invited
• [Presentation] Visualization and manipulation of cell cycle regulation by live-cell imaging and optogenetics (2022)
  • Author(s): 青木 一洋
  • Organizer: Cell State Transitions: Approaches, Experimental Systems and Models
  • Invited
• [Presentation] 生細胞イメージングによって見えてきたGPCR シグナル伝達の動的符号化原理 (2022)
  • Author(s): 青木 一洋
  • Organizer: 第74回日本細胞生物学会大会
  • Invited
• [Presentation] Encoding and Decoding Biological Information (2022)
  • Author(s): 青木 一洋
  • Organizer: 第１０回日仏先端科学（JFFoS）シンポジウム
  • Invited
• [Presentation] 多細胞ダイナミクスや細胞内相分離現象における相互作用法則の探索 (2022)
  • Author(s): 川口 喬吾
  • Organizer: 第45回日本分子生物学会年会
  • Invited
• [Presentation] Interaction rules within multicellular dynamics and biological condensates (2022)
  • Author(s): 川口 喬吾
  • Organizer: 第60回 生物物理学会
  • Invited
• [Presentation] Chirality in the collective migration of neural progenitors (2022)
  • Author(s): 川口 喬吾
  • Organizer: World Congress of Biomechanics
  • Invited
• [Presentation] Topology and active matter physics in cultured nematic cells (2022)
  • Author(s): 川口 喬吾
  • Organizer: World Congress of Biomechanics
  • Invited
• [Presentation] 細胞間相互作用の異方性とキラリティとアクティブマター (2022)
  • Author(s): 川口 喬吾
  • Organizer: 日本細胞生物学会大会
  • Invited
• [Presentation] Probing the rules of interaction in biological agents (2022)
  • Author(s): 川口 喬吾
  • Organizer: OIST Workshop: Cells, energetics, and information
  • Invited
• [Presentation] Properties of cell-cell interactions shaping multicellular dynamics (2022)
  • Author(s): 川口 喬吾
  • Organizer: Japan-Singapore Joint Developmental Biology Meeting 2022
  • Invited
• [Presentation] On the origin of appetite (2022)
  • Author(s): 谷本 拓
  • Organizer: NIBB新規モデル生物開発共同利用研究ミニシンポジウム「エダアシクラゲを用いた新規刺胞動物モデルの研究基盤構築」
  • Invited
• [Presentation] Regulation of dopamine neurons for proper valuation (2022)
  • Author(s): 谷本 拓
  • Organizer: XXVI International Congress of Entomology
  • Invited
• [Presentation] Scaling and spontaneous symmetry restoring of topological defect dynamics in liquid crystal (2022)
  • Author(s): 竹内 一将
  • Organizer: The 12th Dynamics Days Asia Pacific (DDAP12)
  • Invited
• [Presentation] Kardar-Parisi-Zhang universality class (2022)
  • Author(s): 竹内 一将
  • Organizer: Stat&QuantPhys Autumn School 2022 (SQP2022)
  • Invited
• [Presentation] Bacterial glass (2022)
  • Author(s): 竹内 一将
  • Organizer: The 15th Asia Pacific Physics Conference (APPC15)
  • Invited
• [Presentation] アクティブマターのガラス転移とバクテリア実験 (2022)
  • Author(s): 竹内 一将
  • Organizer: 名古屋大学 大学院理学研究科 理学専攻 物理科学領域 談話会
  • Invited
• [Presentation] バクテリア集団のガラス転移 (2022)
  • Author(s): 竹内 一将
  • Organizer: 非平衡ソフトマター・アモルファス物質の 物性解明への力学的自己組織化からの挑戦
  • Invited
• [Presentation] 細菌は自然環境中でどのように動くのか？ (2022)
  • Author(s): 中根 大介
  • Organizer: 日本微生物生態学会 第35回大会
  • Invited
• [Presentation] マイコプラズマは流れに逆らって宿主表面を動いている？ (2022)
  • Author(s): 中根 大介
  • Organizer: 第49回日本マイコプラズマ学会学術集会
  • Invited
• [Presentation] 細胞内反応拡散波の人工細胞再構成系で探る細胞空間の時空間パターン形成原理 (2022)
  • Author(s): 藤原 慶
  • Organizer: 定量生物学の会第十回年会
  • Invited
• [Presentation] 人工細胞内再構成系で探る生化学システムの細胞サイズ効果 (2022)
  • Author(s): 藤原 慶
  • Organizer: 広島大学健康長寿研究拠点（HiHA）WS「サイズ生物学の探究」
  • Invited
• [Presentation] 細胞を創る研究 (ボトムアップ合成生物学) への誘い (2022)
  • Author(s): 藤原 慶
  • Organizer: TARA Seminar理論合成インシリコ生物学セミナー
  • Invited
• [Presentation] 線虫の機能的全脳イメージング: 神経回路の情報処理の理解を目指して (2022)
  • Author(s): 豊島 有
  • Organizer: UBI meeting
  • Invited
• [Presentation] Analyisis of multiplexed information coding in the nervous system of C. elegans (2022)
  • Author(s): 豊島 有
  • Organizer: 第60回日本生物物理学会年会
  • Invited
• [Presentation] Imaging and analyzing whole brain activity of C. elegans (2022)
  • Author(s): 豊島 有
  • Organizer: CREST Rising Star seminar
  • Invited
• [Presentation] Molecules and neural network underlying salt preference (2022)
  • Author(s): 豊島 有
  • Organizer: CeNeuro2022
  • Invited
• [Presentation] RNA構造変化を蛍光ブリンキングで検出する (2022)
  • Author(s): 北村 朗
  • Organizer: 第45回 日本分子生物学会年会
  • Invited
• [Presentation] Basics and applications of chromophore-assisted light inactivation (CALI) (2022)
  • Author(s): 北村 朗
  • Organizer: 第60回 日本生物物理学会年会
  • Invited
• [Presentation] FRAP法を用いた拡散係数測定―夏休みの自由研究― (2022)
  • Author(s): 北村 朗
  • Organizer: 第60回 日本生物物理学会年会
  • Invited
• [Presentation] Intracellular structure and function of chaperone RNA (2022)
  • Author(s): 北村 朗
  • Organizer: International Workshop on Fluorescence Methods and Applications 2022
  • Invited
• [Presentation] 生体分子モーターキネシンのエネルギー論とゆらぎによる加速現象 (2022)
  • Author(s): 有賀 隆行
  • Organizer: 第10回ソフトマター研究会
  • Invited
• [Presentation] Single-molecule energetics and nonthermal manipulation of molecular motor kinesin (2022)
  • Author(s): 有賀 隆行
  • Organizer: 2022 East Asian Single-Molecule Biophysics Symposium (EASMB 2022)
  • Invited
• [Presentation] アメーバ集団による細胞外建築 (2022)
  • Author(s): 澤井 哲
  • Organizer: 2022年第83回応用物理学会秋季学術講演会 分科企画シンポジウム 新領域グループ トータルバイオミメティクス研究グループ企画「群知能の新展開 生物・ロボット・材料の創発が生み出す知」
  • Invited
• [Presentation] 細胞性粘菌にみる、組織形成のロジック (2022)
  • Author(s): 澤井 哲
  • Organizer: 第30回発達腎研究会 特別講演
  • Invited
• [Presentation] 3D morphogenetic movements in the parallel world (2022)
  • Author(s): 澤井 哲
  • Organizer: The 55th Annual Meeting of the Japanese Society for Developmental Biologists
  • Invited