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2018 Fiscal Year Annual Research Report

Analysis of "Response zone" and " Communication zone" in mitochondria and Golgi apparatus

Planned Research

Project AreaToward an integrative understanding of functional zones in organelles
Project/Area Number 17H06414
Research InstitutionTokyo Medical and Dental University

Principal Investigator

清水 重臣  東京医科歯科大学, 難治疾患研究所, 教授 (70271020)

Co-Investigator(Kenkyū-buntansha) 田村 康  山形大学, 理学部, 准教授 (50631876)
細谷 孝充  東京医科歯科大学, 生体材料工学研究所, 教授 (60273124)
吉田 秀郎  兵庫県立大学, 生命理学研究科, 教授 (60378528)
矢木 宏和  名古屋市立大学, 大学院薬学研究科, 講師 (70565423)
Project Period (FY) 2017-06-30 – 2022-03-31
Keywordsオルガネラ
Outline of Annual Research Achievements

1つのオルガネラの中には、異なる役割を担う場が存在し、本領域ではこれをオルガネラ・ゾーンと命名している。本研究では、「ミトコンドリアとゴルジ体の応答ゾーン」、「ミトコンドリアと小胞体、ゴルジ体の連携ゾーン」を中心に解析を行なった。
1、ゴルジ体ストレス応答ゾーン:このゾーンには、ゴルジ体ストレス時に、過剰な分泌たんぱく質の蓄積を抑制するためのGOMEDゾーン、プロテオグリカン型糖鎖修飾を行うプロテオグリカン・ゾーン、ムチン経路を担うムチン・ゾーンなどが存在する。(1)GOMEDに関しては、GOMEDを誘導できる低分子化合物を発見し、この化合物の作用機序を明らかにすることにより、ゴルジ体膜で起こっているストレス応答現象を概ね理解することに成功した。 (2)プロテオグリカン・ゾーンに関しては、これを制御するエンハンサーとしてPGSE-AとPGSE-Bを同定し、PGSE-Aに結合する転写因子の候補としてKLF familyの転写因子群を見出した。 (3)ムチン・ゾーンに関しては、このゾーンを増強する標的遺伝子とエンハンサー配列MGSEを同定した。
2、ミトコンドリア・小胞体(Mt-ER)連携ゾーン: 出芽酵母またはHeLa細胞のミトコンドリア,小胞体膜上に,split-GFP分子を標的化させることで任意のオルガネラ間コンタクトサイトを可視化,定量化する実験系の構築に成功した。これを定量化し,遺伝学スクリーニングと組み合わせることで,ミトコンドリア-小胞体間連携ゾーン形成に重要な役割を果たす新規因子の同定に成功した。また、①既存のERMES複合体が会合と解離を繰り返すこと、②適切なミトコンドリア分裂が不必要なERMES複合体の会合を阻害することでコンタクトサイトの数を調節すること、③小胞体ストレスが、ミトコンドリア-小胞体間コンタクトサイトの数を顕著に増加させることを明らかにした。

Current Status of Research Progress
Current Status of Research Progress

2: Research has progressed on the whole more than it was originally planned.

Reason

ゴルジ体のストレス応答ゾーン解析においては、イメージング(膜の形態変化の捕捉)、分子生物学的解析(ゾーン形成に関わる分子の同定とシグナル伝達機構の解明)、遺伝学的解析(ゾーン形成ができないマウスの作成)、転写レベルでの解析、数理解析などが順調に進行し、多方面からの解析による相乗的効果が現れ、実態解明が急速に進行した。Mt-ER連携ゾーン解析に関しても、split GFPを用いた可視化ツールの開発に成功した他、ゾーン構成因子の構造解析(ERMES複合体の構造)、遺伝学的解析(酵母の遺伝学)、細胞生物学的解析が進み、実態解明が急速に進行した。

Strategy for Future Research Activity

ゴルジストレス応答ゾーンやMt-ER連携ゾーンの解析に関しては、様々な手法を駆使して研究が進んでいる。研究代表者と分担者の間での共同研究も有機的に機能しており、現在の研究を引き続き進めることにより、応答ゾーン、連携ゾーンの実態解明に至るものと考えている。また、新たなオルガネラ間の連携も複数見出されており、これらの実態解明も行っていく予定である。

  • Research Products

    (38 results)

All 2019 2018

All Journal Article (38 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 38 results)

  • [Journal Article] Beclin 1 regulates recycling endosome and is required for skin development in mice2019

    • Author(s)
      Noguchi Saori、Honda Shinya、Saitoh Tatsuya、Matsumura Hiroyuki、Nishimura Emi、Akira Shizuo、Shimizu Shigeomi
    • Journal Title

      Communications Biology

      Volume: 2 Pages: 37

    • DOI

      10.1038/s42003-018-0279-0

    • Peer Reviewed
  • [Journal Article] Synthesis of Alkynyl Sulfides by Copper-Catalyzed Thiolation of Terminal Alkynes Using Thiosulfonates2019

    • Author(s)
      Kanemoto Kazuya、Yoshida Suguru、Hosoya Takamitsu
    • Journal Title

      Organic Letters

      Volume: 21 Pages: 3172~3177

    • DOI

      10.1021/acs.orglett.9b00875

    • Peer Reviewed
  • [Journal Article] Facile Synthesis of Diverse o-Iodoaryl Triflates from o-Silylaryl Triflates by Aluminum-Mediated Desilyliodination.2019

    • Author(s)
      Yoshida S, Hazama Y, Kanemoto K, Nakamura Y, *Hosoya T
    • Journal Title

      Chem. Lett

      Volume: 印刷中 Pages: 印刷中

    • Peer Reviewed
  • [Journal Article] Modular Synthesis of Unsymmetrical Doubly-ring-fused Benzene Derivatives Based on a Sequential Ring Construction Strategy Using Oxadiazinones as a Platform Molecule2019

    • Author(s)
      Meguro Tomohiro、Chen Shengnan、Kanemoto Kazuya、Yoshida Suguru、Hosoya Takamitsu
    • Journal Title

      Chemistry Letters

      Volume: 印刷中 Pages: 印刷中

    • DOI

      10.1246/cl.190118

    • Peer Reviewed
  • [Journal Article] A facile preparation of functional cycloalkynes via an azide-to-cycloalkyne switching approach2019

    • Author(s)
      Yoshida Suguru、Kuribara Tomoko、Ito Harumi、Meguro Tomohiro、Nishiyama Yoshitake、Karaki Fumika、Hatakeyama Yasutomo、Koike Yuka、Kii Isao、Hosoya Takamitsu
    • Journal Title

      Chemical Communications

      Volume: 55 Pages: 3556~3559

    • DOI

      10.1039/c9cc01113g

    • Peer Reviewed
  • [Journal Article] Divergent Synthesis of Photoaffinity Probe Candidates by Click Reactions of Azido-Substituted Aryltrifluoromethyldiazirines2019

    • Author(s)
      Hosoya Takamitsu、Watanabe Kenji、Tsuda Junpei、Ochiai Hidenori、Niwa Takashi
    • Journal Title

      HETEROCYCLES

      Volume: 99 Pages: 1366~1366

    • DOI

      10.3987/COM-18-S(F)76

    • Peer Reviewed
  • [Journal Article] Prediction of intracellular targets of a small compound by analyzing peptides presented on MHC class I2019

    • Author(s)
      Sugimoto Yuna、Murohashi Michiko、Arakawa Satoko、Honda Shinya、Shimizu Shigeomi
    • Journal Title

      Biochemical and Biophysical Research Communications

      Volume: 508 Pages: 480~486

    • DOI

      10.1016/j.bbrc.2018.11.089

    • Peer Reviewed
  • [Journal Article] Role of cyclooxygenase-2-mediated prostaglandin E2-prostaglandin E receptor 4 signaling in cardiac reprogramming2019

    • Author(s)
      Muraoka Naoto、Nara Kaori、Tamura Fumiya、Kojima Hidenori、Yamakawa Hiroyuki、Sadahiro Taketaro、Miyamoto Kazutaka、Isomi Mari、Haginiwa Sho、Tani Hidenori、Kurotsu Shota、Osakabe Rina、Torii Satoru、Shimizu Shigeomi、Okano Hideyuki、Sugimoto Yukihiko、Fukuda Keiichi、Ieda Masaki
    • Journal Title

      Nature Communications

      Volume: 10 Pages: 679

    • DOI

      10.1038/s41467-019-08626-y

    • Peer Reviewed
  • [Journal Article] Porin Associates with Tom22 to Regulate the Mitochondrial Protein Gate Assembly2019

    • Author(s)
      Sakaue Haruka、Shiota Takuya、Ishizaka Naoya、Kawano Shin、Tamura Yasushi、Tan Kher Shing、Imai Kenichiro、Motono Chie、Hirokawa Takatsugu、Taki Kentaro、Miyata Non、Kuge Osamu、Lithgow Trevor、Endo Toshiya
    • Journal Title

      Molecular Cell

      Volume: 73 Pages: 1044~1055.e8

    • DOI

      10.1016/j.molcel.2019.01.003

    • Peer Reviewed
  • [Journal Article] CdsA is involved in biosynthesis of glycolipid MPIase essential for membrane protein integration in vivo2019

    • Author(s)
      Sawasato Katsuhiro、Sato Ryo、Nishikawa Hanako、Iimura Naoki、Kamemoto Yuki、Fujikawa Kohki、Yamaguchi Toshiyuki、Kuruma Yutetsu、Tamura Yasushi、Endo Toshiya、Ueda Takuya、Shimamoto Keiko、Nishiyama Ken-ichi
    • Journal Title

      Scientific Reports

      Volume: 9 Pages: 1372

    • DOI

      10.1038/s41598-018-37809-8

    • Peer Reviewed
  • [Journal Article] Myristoyl group-aided protein import into the mitochondrial intermembrane space2019

    • Author(s)
      Ueda Eri、Tamura Yasushi、Sakaue Haruka、Kawano Shin、Kakuta Chika、Matsumoto Shunsuke、Endo Toshiya
    • Journal Title

      Scientific Reports

      Volume: 9 Pages: 1185

    • DOI

      10.1038/s41598-018-38016-1

    • Peer Reviewed
  • [Journal Article] Maintenance of Cardiolipin and Crista Structure Requires Cooperative Functions of Mitochondrial Dynamics and Phospholipid Transport2019

    • Author(s)
      Kojima Rieko、Kakimoto Yuriko、Furuta Shiina、Itoh Kie、Sesaki Hiromi、Endo Toshiya、Tamura Yasushi
    • Journal Title

      Cell Reports

      Volume: 26 Pages: 518~528.e6

    • DOI

      10.1016/j.celrep.2018.12.070

    • Peer Reviewed
  • [Journal Article] PGSE Is a Novel Enhancer Regulating the Proteoglycan Pathway of the Mammalian Golgi Stress Response2019

    • Author(s)
      Sasaki Kanae、Komori Ryota、Taniguchi Mai、Shimaoka Akie、Midori Sachiko、Yamamoto Mayu、Okuda Chiho、Tanaka Ryuya、Sakamoto Miyu、Wakabayashi Sadao、Yoshida Hiderou
    • Journal Title

      Cell Structure and Function

      Volume: 44 Pages: 1~19

    • DOI

      10.1247/csf.18031

    • Peer Reviewed
  • [Journal Article] GlcNAc6ST3 is a keratan sulfate sulfotransferase for the protein-tyrosine phosphatase PTPRZ in the adult brain2019

    • Author(s)
      Narentuya、Takeda-Uchimura Yoshiko、Foyez Tahmina、Zhang Zui、Akama Tomoya O.、Yagi Hirokazu、Kato Koichi、Komatsu Yukio、Kadomatsu Kenji、Uchimura Kenji
    • Journal Title

      Scientific Reports

      Volume: 9 Pages: 4387

    • DOI

      10.1038/s41598-019-40901-2

    • Peer Reviewed
  • [Journal Article] Generation of the heterogeneity of extracellular vesicles by membrane organization and sorting machineries2019

    • Author(s)
      Harada Yoichiro、Suzuki Takehiro、Fukushige Tomoko、Kizuka Yasuhiko、Yagi Hirokazu、Yamamoto Mika、Kondo Kiyotaka、Inoue Hiromasa、Kato Koichi、Taniguchi Naoyuki、Kanekura Takuro、Dohmae Naoshi、Maruyama Ikuro
    • Journal Title

      Biochimica et Biophysica Acta (BBA) - General Subjects

      Volume: 1863 Pages: 681~691

    • DOI

      10.1016/j.bbagen.2019.01.015

    • Peer Reviewed
  • [Journal Article] Ligand binding to human prostaglandin E receptor EP4 at the lipid-bilayer interface2018

    • Author(s)
      Toyoda Y、Morimoto K、Suno R、Horita S、Yamashita K、Hirata K、Shimizu T、Asada H、Nakane T、Shiimura Y、Nakagita T、Tsuge K、Yoshida S、Kuribara Tomoko、Hosoya Takamitsu、Sugimoto Y、Nomura N、Sato M、Hirokawa T、Kinoshita M、Murata T、Takayama K、Yamamoto M、Narumiya S、Iwata S、Kobayashi T
    • Journal Title

      Nature Chemical Biology

      Volume: 15 Pages: 18~26

    • DOI

      10.1038/s41589-018-0131-3

    • Peer Reviewed
  • [Journal Article] Association between aromatase in human brains and personality traits2018

    • Author(s)
      Takahashi Kayo、Hosoya Takamitsu、Onoe Kayo、Takashima Tadayuki、Tanaka Masaaki、Ishii Akira、Nakatomi Yasuhito、Tazawa Shusaku、Takahashi Kazuhiro、Doi Hisashi、Wada Yasuhiro、Watanabe Yasuyoshi
    • Journal Title

      Scientific Reports

      Volume: 8 Pages: 16841

    • DOI

      10.1038/s41598-018-35065-4

    • Peer Reviewed
  • [Journal Article] Further enhancement of the clickability of doubly sterically-hindered aryl azides by para-amino substitution2018

    • Author(s)
      Yoshida Suguru、Tanaka Junko、Nishiyama Yoshitake、Hazama Yuki、Matsushita Takeshi、Hosoya Takamitsu
    • Journal Title

      Chemical Communications

      Volume: 54 Pages: 13499~13502

    • DOI

      10.1039/c8cc05791e

    • Peer Reviewed
  • [Journal Article] Palladium(ii)-mediated rapid 11C-cyanation of (hetero)arylborons2018

    • Author(s)
      Zhang Zhouen、Niwa Takashi、Watanabe Yasuyoshi、Hosoya Takamitsu
    • Journal Title

      Organic & Biomolecular Chemistry

      Volume: 16 Pages: 7711~7716

    • DOI

      10.1039/c8ob02049c

    • Peer Reviewed
  • [Journal Article] Hydrosilyl Group-directed Iridium-catalyzed peri-Selective C?H Borylation of Ring-fused (Hetero)Arenes2018

    • Author(s)
      Sumida Yuto、Harada Ryu、Sumida Tomoe、Hashizume Daisuke、Hosoya Takamitsu
    • Journal Title

      Chemistry Letters

      Volume: 47 Pages: 1251~1254

    • DOI

      10.1246/cl.180594

    • Peer Reviewed
  • [Journal Article] Generation of Arynes by Selective Cleavage of a Carbon?Phosphorus Bond of o-(Diarylphosphinyl)aryl Triflates Using a Grignard Reagent2018

    • Author(s)
      Nishiyama Yoshitake、Kamada Shuhei、Yoshida Suguru、Hosoya Takamitsu
    • Journal Title

      Chemistry Letters

      Volume: 47 Pages: 1216~1219

    • DOI

      10.1246/cl.180555

    • Peer Reviewed
  • [Journal Article] Transient Protection of Organic Azides from Click Reactions with Alkynes by Phosphazide Formation2018

    • Author(s)
      Meguro Tomohiro、Yoshida Suguru、Igawa Kazunobu、Tomooka Katsuhiko、Hosoya Takamitsu
    • Journal Title

      Organic Letters

      Volume: 20 Pages: 4126~4130

    • DOI

      10.1021/acs.orglett.8b01692

    • Peer Reviewed
  • [Journal Article] Expanding the synthesizable multisubstituted benzo[b]thiophenes via 6,7-thienobenzynes generated from o-silylaryl triflate-type precursors2018

    • Author(s)
      Yoshida Suguru、Kuribara Tomoko、Morita Takamoto、Matsuzawa Tsubasa、Morimoto Kazushi、Kobayashi Takuya、Hosoya Takamitsu
    • Journal Title

      RSC Advances

      Volume: 8 Pages: 21754~21758

    • DOI

      10.1039/C8RA04035D

    • Peer Reviewed
  • [Journal Article] Staudinger reaction using 2,6-dichlorophenyl azide derivatives for robust aza-ylide formation applicable to bioconjugation in living cells2018

    • Author(s)
      Meguro Tomohiro、Terashima Norikazu、Ito Harumi、Koike Yuka、Kii Isao、Yoshida Suguru、Hosoya Takamitsu
    • Journal Title

      Chemical Communications

      Volume: 54 Pages: 7904~7907

    • DOI

      10.1039/C8CC00179K

    • Peer Reviewed
  • [Journal Article] Slow luminescence kinetics of semi-synthetic aequorin: expression, purification and structure determination of cf3-aequorin2018

    • Author(s)
      Inouye Satoshi、Tomabechi Yuri、Hosoya Takamitsu、Sekine Shun-ichi、Shirouzu Mikako
    • Journal Title

      The Journal of Biochemistry

      Volume: 164 Pages: 247~255

    • DOI

      10.1093/jb/mvy049

    • Peer Reviewed
  • [Journal Article] CDK9 Inhibitor FIT-039 Suppresses Viral Oncogenes E6 and E7 and Has a Therapeutic Effect on HPV-Induced Neoplasia2018

    • Author(s)
      Ajiro Masahiko、Sakai Hiroyuki、Onogi Hiroshi、Yamamoto Makoto、Sumi Eriko、Sawada Teruo、Nomura Takashi、Kabashima Kenji、Hosoya Takamitsu、Hagiwara Masatoshi
    • Journal Title

      Clinical Cancer Research

      Volume: 24 Pages: 4518~4528

    • DOI

      10.1158/1078-0432.CCR-17-3119

    • Peer Reviewed
  • [Journal Article] Synthesis of Diverse Phenothiazines by Direct Thioamination of Arynes with S-(o-Bromoaryl)-S-methylsulfilimines and Subsequent Intramolecular Buchwald?Hartwig Amination2018

    • Author(s)
      Matsuzawa Tsubasa、Uchida Keisuke、Yoshida Suguru、Hosoya Takamitsu
    • Journal Title

      Chemistry Letters

      Volume: 47 Pages: 825~828

    • DOI

      10.1246/cl.180304

    • Peer Reviewed
  • [Journal Article] Quantification of receptor activation by oxytocin and vasopressin in endocytosis-coupled bioluminescence reduction assay using nanoKAZ2018

    • Author(s)
      Kii Isao、Hirahara-Owada Shino、Yamaguchi Masataka、Niwa Takashi、Koike Yuka、Sonamoto Rie、Ito Harumi、Takahashi Kayo、Yokoyama Chihiro、Hayashi Takuya、Hosoya Takamitsu、Watanabe Yasuyoshi
    • Journal Title

      Analytical Biochemistry

      Volume: 549 Pages: 174~183

    • DOI

      10.1016/j.ab.2018.04.001

    • Peer Reviewed
  • [Journal Article] Convergent synthesis of trifunctional molecules by three sequential azido-type-selective cycloadditions2018

    • Author(s)
      Yoshida Suguru、Kanno Kimiyuki、Kii Isao、Misawa Yoshihiro、Hagiwara Masatoshi、Hosoya Takamitsu
    • Journal Title

      Chemical Communications

      Volume: 54 Pages: 3705~3708

    • DOI

      10.1039/c8cc01195h

    • Peer Reviewed
  • [Journal Article] Association Between Autophagy and Neurodegenerative Diseases2018

    • Author(s)
      Fujikake Nobuhiro、Shin Minkyoung、Shimizu Shigeomi
    • Journal Title

      Frontiers in Neuroscience

      Volume: 12 Pages: 255

    • DOI

      10.3389/fnins.2018.00255

    • Peer Reviewed
  • [Journal Article] Organelle zones in mitochondria2018

    • Author(s)
      Shimizu Shigeomi
    • Journal Title

      The Journal of Biochemistry

      Volume: 165 Pages: 101~107

    • DOI

      10.1093/jb/mvy068

    • Peer Reviewed
  • [Journal Article] Discovery and Optimization of Inhibitors of the Parkinson’s Disease Associated Protein DJ-12018

    • Author(s)
      Tashiro Shinya、Caaveiro Jose M. M.、Nakakido Makoto、Tanabe Aki、Nagatoishi Satoru、Tamura Yasushi、Matsuda Noriyuki、Liu Dali、Hoang Quyen Q.、Tsumoto Kouhei
    • Journal Title

      ACS Chemical Biology

      Volume: 13 Pages: 2783~2793

    • DOI

      10.1021/acschembio.8b00701

    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Visualizing multiple inter-organelle contact sites using the organelle-targeted split-GFP system2018

    • Author(s)
      Kakimoto Yuriko、Tashiro Shinya、Kojima Rieko、Morozumi Yuki、Endo Toshiya、Tamura Yasushi
    • Journal Title

      Scientific Reports

      Volume: 8 Pages: 6175

    • DOI

      10.1038/s41598-018-24466-0

    • Peer Reviewed
  • [Journal Article] Structural Biological Approach to Biopharmaceuticals2018

    • Author(s)
      Kato Koichi、Yanaka Saeko、Yagi Hirokazu
    • Journal Title

      YAKUGAKU ZASSHI

      Volume: 138 Pages: 1495~1502

    • DOI

      10.1248/yakushi.18-00020-3

    • Peer Reviewed
  • [Journal Article] Structure and Dynamics of Immunoglobulin G Glycoproteins2018

    • Author(s)
      Yagi Hirokazu、Yanaka Saeko、Kato Koichi
    • Journal Title

      Adv. Exp. Med. Biol.

      Volume: 1104 Pages: 219~235

    • DOI

      10.1007/978-981-13-2158-0_11

    • Peer Reviewed
  • [Journal Article] Distinct substrate specificities of human GlcNAc-6-sulfotransferases revealed by mass spectrometry?based sulfoglycomic analysis2018

    • Author(s)
      Yu Shin-Yi、Hsiao Cheng-Te、Izawa Mineko、Yusa Akiko、Ishida Hiroji、Nakamura Shigeo、Yagi Hirokazu、Kannagi Reiji、Khoo Kay-Hooi
    • Journal Title

      Journal of Biological Chemistry

      Volume: 293 Pages: 15163~15177

    • DOI

      10.1074/jbc.RA118.001937

    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] N-glycan structures of human alveoli provide insight into influenza A virus infection and pathogenesis2018

    • Author(s)
      Sriwilaijaroen Nongluk、Nakakita Shin-ichi、Kondo Sachiko、Yagi Hirokazu、Kato Koichi、Murata Takeomi、Hiramatsu Hiroaki、Kawahara Toshio、Watanabe Yohei、Kanai Yasushi、Ono Takao、Hirabayashi Jun、Matsumoto Kazuhiko、Suzuki Yasuo
    • Journal Title

      The FEBS Journal

      Volume: 285 Pages: 1611~1634

    • DOI

      10.1111/febs.14431

    • Peer Reviewed
  • [Journal Article] Stable isotope labeling approaches for NMR characterization of glycoproteins using eukaryotic expression systems2018

    • Author(s)
      Yanaka Saeko、Yagi Hirokazu、Yogo Rina、Yagi-Utsumi Maho、Kato Koichi
    • Journal Title

      Journal of Biomolecular NMR

      Volume: 71 Pages: 193~202

    • DOI

      10.1007/s10858-018-0169-2

    • Peer Reviewed

URL: 

Published: 2019-12-27  

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