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2004 Fiscal Year Final Research Report Summary

Chromatin Remodeling and Epigenetics

Research Project

Project/Area Number 14208086
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Research Field Molecular biology
Research InstitutionNational Institute of Genetics

Principal Investigator

HIROSE Susumu  National Institute of Genetics, Department of Developmental Genetics, Professor, 個体遺伝研究系, 教授 (90022730)

Co-Investigator(Kenkyū-buntansha) NISHIOKA Kenichi  National Institute of Genetics, Department of Developmental Biology, Assistant Professor, 個体遺伝研究系, 助手 (80370120)
Project Period (FY) 2002 – 2005
KeywordsChromatin Remodling / Epigenetics / Drosophila / GAGA factor / FACT / Brahma Complex / Position Effect Variegation / Supercoiling Factor
Research Abstract

1) We elucidated the mechanism underlying the site-specific chromatin remodeling around the GAGA factor-binding site. First, GAGA factor recruits FACT to its binding site. Then, FACT induces a conformational change in the neighboring nucleosomes, which in turn facilitates chromatin remodeling.
2) We identified subunits of the Brahma chromatin remodeling compex as the GAGA factor-associated proteins besides FACT, suggesting that Brahma complex is involved in the GAGA factor-FACT complex induced chromatin remodeling.
3) Genetic analysis revealed that the GAGA factor-FACT complex contributes to epigenetic maintenance of Hox gene expression.
4) Genetic and biochemical analyses demonstrated that the GAGA factor-FACT complex is involved in position effect variegation.
5) We found a crucial role of Drosophila supercoiling factor in the dosage compensation of X chromosome using RNAi in vivo.

  • Research Products

    (30 results)

All 2004 2003 2002

All Journal Article (30 results)

  • [Journal Article] Nucleosomal histone kinase-1 phosphorylates H2A Thr 119 during mitosis in the early Drosophila embryo.2004

    • Author(s)
      Aihara, H.
    • Journal Title

      Genes Dev. 18

      Pages: 877-888

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Coactivator MBF1 preserves the redox-dependent AP-1 activity during oxidative stress in Drosophila.2004

    • Author(s)
      Marek, Jindra
    • Journal Title

      EMBO J. 23

      Pages: 3538-3547

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Visualization of unconstrained negative supercoils of DNA on polytene chromosomes of Drosophila.2004

    • Author(s)
      Matsumoto, K.
    • Journal Title

      J. Cell Sci. 117

      Pages: 3797-3805

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Introduction of p16INK4a inhibits telomerase activity through transcriptional suppression of human telomerase reverse transcriptase expression in human gliomas.2004

    • Author(s)
      Saito, M.
    • Journal Title

      Int. J. Oncol. 24

      Pages: 1213-1220

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Tips in analyzing antibodies directed against specific histone tail modifications.2004

    • Author(s)
      Sarma, K.
    • Journal Title

      Methods Enzymol. 376

      Pages: 255-269

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Three Arabidopsis MBF1 homologs with distinct expression profiles play roles as transcriptional co-activators.2004

    • Author(s)
      Tsuda, K.
    • Journal Title

      Plant Cell Physiol. 45

      Pages: 225-231

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Nucleosomal histone kinase-1 phosphorylates H2A Thr 119 during mitosis in the early Drosophila embryo.2004

    • Author(s)
      Aihara H, Nakagawa T, Yasui K, Ohta T, Hirose S, Dhomae N, Takio K, Kaneko M, Takeshima Y, Muramatsu M, Ito T.
    • Journal Title

      Genes Dev. 18

      Pages: 877-888

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Coactivator MBF1 preserves the redox-dependent AP-1 activity during oxidative stress in Drosophila.2004

    • Author(s)
      Marek Jindra, Ivana Gaziova, Mirka Uhlirova, Masataka Okabe, Yasushi Hiromi, Susumu Hirose.
    • Journal Title

      EMBO J. 23

      Pages: 3538-3547

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Visualization of unconstrained negative supercoils of DNA on polytene chromosomes of Drosophila.2004

    • Author(s)
      Matsumoto K., Hirose S.
    • Journal Title

      J.Cell Sci. 117

      Pages: 3797-3805

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Introduction of p16INK4a inhibits telomerase activity through transcriptional suppression of human telomerase reverse transcr ptase expression in human gliomas.2004

    • Author(s)
      Saito M, Nakagawa K., Hamada K, Hirose S, Harada H, Kohno S, Nagato S, Ohnishi T
    • Journal Title

      Int.J.Oncol. 24

      Pages: 1213-1220

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Tips in analyzing antibodies directed against specific histone tail modifications.2004

    • Author(s)
      Sarma K, Nishioka K, Reinberg D
    • Journal Title

      Methods Enzymol. 376

      Pages: 255-269

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Three Arabidopsis MBF1 homologs with distinct expression profiles play roles as transcriptional co-activators.2004

    • Author(s)
      Tsuda K, Tsuji T, Hirose S, Yamazaki K.
    • Journal Title

      Plant Cell Physiol. 45

      Pages: 225-231

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Identification of the human IAI. 3B promoter element and its use in the construction of a replication-selective adenovirus for ovarian cancer therapy.2003

    • Author(s)
      Hamada, K
    • Journal Title

      Cancer Res. 63

      Pages: 2506-2512

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Facile synthesis of site-specifically acetylated and methylated histone proteins : reagents for evaluation of the histone code hypothesis.2003

    • Author(s)
      He, S.
    • Journal Title

      Proc. Natl. Acad. Sci. USA 100

      Pages: 12033-12038

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Drosophila MBF1 is a co-activator for Tracheae Defective and contributes to the formation of tracheal and nervous systems.2003

    • Author(s)
      Liu, Q. -X.
    • Journal Title

      Development 130

      Pages: 719-728

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Methods and tips for the purification of human histone methyltransferases.2003

    • Author(s)
      Nishioka, K
    • Journal Title

      Methods 31

      Pages: 49-58

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Tracking FACT and RNA polymerase II elongation complex through chromatin in vivo.2003

    • Author(s)
      Saunder, A.
    • Journal Title

      Science 301

      Pages: 1094-1096

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Drosophila FACT contributes to Hox gene expression through physical and functional interactions with GAGA factor.2003

    • Author(s)
      Simojima, T.
    • Journal Title

      Genes Dev. 17

      Pages: 1605-1616

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Histone lysine methylation : a signature for chromatin function.2003

    • Author(s)
      Sims, R. J. 3rd
    • Journal Title

      Trends Genet 19

      Pages: 629-639

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Cloning of Cyc (Bmal-1) homolog in Bombyx mori ; Structural analyses and the tissue specific distributions.2003

    • Author(s)
      Markova, E. P.
    • Journal Title

      Comp. Biochem. Physiol. B 10

      Pages: 535-542

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Identification of the human IAI.3B promoter element and its use in the construction of a replication-selective adenovirus for ovarian cancer therapy.2003

    • Author(s)
      Hamada, K., Kohno, S., Iwamoto, M., Yokota, H., Okada, M., Tagawa, M., Hirose, S., Yamasaki, K., Shirakata, Y., Hashimoto, K., Ito, M.
    • Journal Title

      Cancer Res. 63

      Pages: 2506-2512

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Facile synthesis of site-specifically acetylated and methylated histone proteins: reagents for evaluation of the histone code hypothesis.2003

    • Author(s)
      He, S., Bauman, D., Davis, J.S., Loyola, A., Nishioka, K., Gronlund, J.L., Reinberg, D., Meng, F., Kelleher, N., McCafferty, D.G.
    • Journal Title

      Proc. Natl. Acad. Sci. USA. 100

      Pages: 12033-12038

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Drosophila MBF1 is a co-activator for Tracheae Defective and contributes to the formation of tracheal and nervous systems.2003

    • Author(s)
      Liu, Q.-X., Jindra, M., Ueda, H., Hiromi, Y., Hirose, S.
    • Journal Title

      Development 130

      Pages: 719-728

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Methods and tips for the purification of human histone methyltransferases.2003

    • Author(s)
      Nishioka, K., Reinberg, D.
    • Journal Title

      Methods 31

      Pages: 49-58

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Tracking FACT and RNA polymerase II elongation complex. through chromatin in vivo.2003

    • Author(s)
      Saunders, A., Werner, J., Andrulis, E.D., Nakayama, T., Hirose, S., Reinberg, D., Lis, J.T.
    • Journal Title

      Science 301

      Pages: 1094-1096

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Drosophila FACT contributes to Hox gene expression through physical and functional interactions with GAGA factor.2003

    • Author(s)
      Simojima, T., Okada, M., Nakayama, T., Ueda, H., Okawa, K., Iwamatsu, A., Handa, H., Hirose, S.
    • Journal Title

      Genes Dev. 17

      Pages: 1605-1616

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Histone lysine methylation: a signature for chromatin function.2003

    • Author(s)
      Sims, R.J.3rd, Nishioka, K., Reinberg, D.
    • Journal Title

      Trends Genet. 19

      Pages: 629-639

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Cloning of Cyc (Bmal-1) homolog in Bombyx mori ; Structural analyses and the tissue specific distributions.2003

    • Author(s)
      Markova, E.P, Ueda, H., Sakamoto, K., Oishi, K., Shimada, Takeda, M.
    • Journal Title

      Comp.Biochem.Physiol.B. 134,10

      Pages: 535-542

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] βFTZ-F1 dependent and independent activation of Edg78E, apupal cuticle gene, during the early metamorphic period in Drosophila melanogaster.2002

    • Author(s)
      Kawasaki, H
    • Journal Title

      Develop. Growth Differ. 44

      Pages: 419-425

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] βFTZ-F1 dependent and independent activation of Edg78E, a pupal cuticle gene, during the early metamorphic period in Drosophila melanogaster.2002

    • Author(s)
      Kawasaki, H., Hirose, S., Ueda, H.
    • Journal Title

      Develop. Growth. Differ. 44

      Pages: 419-425

    • Description
      「研究成果報告書概要(欧文)」より

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Published: 2006-07-11  

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