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2008 Fiscal Year Final Research Report

Experimental and mathematical analyses of biological pattern formation

Research Project

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Project/Area Number 16GS0307
Research Category

Grant-in-Aid for Creative Scientific Research

Allocation TypeSingle-year Grants
Research InstitutionOsaka University (2008)
Nagoya University (2004-2007)

Principal Investigator

KONDO Shigeru  Osaka University, 大学院・生命機能研究科, 教授 (10252503)

Co-Investigator(Kenkyū-buntansha) KAWAKAMI Koichi  国立遺伝学研究所, 個体遺伝研究系初期発生研究部門, 教授 (70195048)
WATANABE Masakatsu  大阪大学, 大学院・生命機能研究科, 准教授 (90323807)
MIYAZAWA Seita  大阪大学, 大学院・生命機能研究科, 助教 (10377905)
Project Period (FY) 2004 – 2008
Keywordsゼブラフィッシュ / 反応拡散 / チューリング / パターン形成 / 色素細胞
Research Abstract

The following results were obtained for Zebra fish's skin pattern formation mechanism.
1) The network of the interaction among the pigment cells was clarified.
2) The computational simulation that built in the network reproduced the process of skin pattern formation accurately.
3) The responsible genes for the mutants were identified
4) The cloned genes were K channel and a gap junction.
5) By making the transgenics fish with the genes or modified ones, the pattern was changed in many different way, suggesting that the genes were core factors of the pattern formation.
6) The ion channels and the small molecules play the key rolein the pattern formation. From above, we have come close to the clarification of the mechanism of pigment pattern formation.

  • Research Products

    (60 results)

All 2010 2009 2008 2007 2006 2005 2004 Other

All Journal Article (33 results) (of which Peer Reviewed: 19 results) Presentation (25 results) Book (1 results) Remarks (1 results)

  • [Journal Article] Efficient transient rescue of hematopoietic mutant phenotypes in zebrafish using Tol2-mediated transgenesis2010

    • Author(s)
      Takeuchi M, Kaneko H, Nishikawa K, Kawakami K, Yamamoto M, Kobayashi M
    • Journal Title

      Development Growth & Differentiation 52

      Pages: 245-250

    • Peer Reviewed
  • [Journal Article] Interactions between zebrafish pigment cells responsible for the generation of Turing patterns2009

    • Author(s)
      Nakamasu A, Takahashi G, Kanbe A, Kondo S
    • Journal Title

      Proceedings of the National Academy of Sciences 106

      Pages: 8429-8434

    • Peer Reviewed
  • [Journal Article] How animals get their skin patterns: fish pigment pattern as a live Turing wave2009

    • Author(s)
      Kondo S, Iwashita M, Yamaguchi M
    • Journal Title

      International Journal of Developmental Biology 53

      Pages: 851-856

  • [Journal Article] Extensive analysis of EST sequences reveals that all cichlid species in Lake Victoria share almost identical transcript sets2009

    • Author(s)
      Kobayashi N, Watanabe M, Horiike T, Kohara Y, Okada N
    • Journal Title

      GENE 441

      Pages: 187-191

    • Peer Reviewed
  • [Journal Article] The Tol2-mediated Gal4-UAS method for gene and enhancer trapping in zebrafish2009

    • Author(s)
      Asakawa K, Kawakami K
    • Journal Title

      Methods 49(3)

      Pages: 275-281

    • Peer Reviewed
  • [Journal Article] Analysis of genes and genome by the tol2-mediated gene and enhancer trap methods2009

    • Author(s)
      Urasaki A, Kawakami K
    • Journal Title

      Methods in Molecular Biology 546

      Pages: 85-102

  • [Journal Article] Transient and stable transgenesis using tol2 transposon vectors2009

    • Author(s)
      Kikuta H, Kawakami K
    • Journal Title

      Methods in Molecular Biology 546

      Pages: 69-84

  • [Journal Article] Theoretical analysis of mechanisms that generate the pigmentation pattern of animals2009

    • Author(s)
      Kondo S, Shirota H
    • Journal Title

      Seminors in Cell and Developmental Biology 20(1)

      Pages: 82-89

  • [Journal Article] Melanophores in the stripes of adult zebrafish do not have the nature to gather, but disperse when they have the space to move2008

    • Author(s)
      Takahashi G, Kondo S
    • Journal Title

      Pigment Cell Research Volume21Issue6

      Pages: 677-686

    • Peer Reviewed
  • [Journal Article] Efficient transposition of the Tol2 transposable element from a single-copy donor in zebrafish2008

    • Author(s)
      Urasaki A, Asakawa K, Kawakami K
    • Journal Title

      Proceedings of the National Academy of Sciences 105

      Pages: 19827-19832

    • Peer Reviewed
  • [Journal Article] Transposition of the vertebrate Tol2 transposableelement in Drosophila melanogaster2008

    • Author(s)
      Urasaki A, Mito T, Noji S, Ueda R, Kawakami K
    • Journal Title

      GENE 425

      Pages: 64-68

    • Peer Reviewed
  • [Journal Article] Targeted gene expression by the Gal4-UAS system in zebrafish2008

    • Author(s)
      Asakawa K, Kawakami K
    • Journal Title

      Development Growth & Differentiation 59

      Pages: 391-399

    • Peer Reviewed
  • [Journal Article] a maternal effect gene identified by transposon-mediated insertional mutagenesis in zebrafish that is essential for the somite boundary maintenance2008

    • Author(s)
      Kotani T, Kawakami K, Misty somites
    • Journal Title

      Developmental Biology 16

      Pages: 383-396

    • Peer Reviewed
  • [Journal Article] Tol2: a versatile gene transfer vector in vertebrates2008

    • Author(s)
      Kawakami K
    • Journal Title

      Genome Biology 8

      Pages: P7

    • Peer Reviewed
  • [Journal Article] 脊椎動物におけるトランスポゾンを用いた遺伝学的方法論2007

    • Author(s)
      浦崎明宏, 川上浩一
    • Journal Title

      実験医学 25

      Pages: 2507-2512

  • [Journal Article] Tol2トランスポゾンを用いたゼブラフィッシュGaL4エンハンサートラップ法の確立2007

    • Author(s)
      浅川和秀, 川上浩一
    • Journal Title

      バイオテクノロジージャーナル 7

      Pages: 603-606

  • [Journal Article] Pattern regulation in the stripe of zebrafish suggests an underlying dynamic and autonomous mechanism2007

    • Author(s)
      Yamaguchi M, Yoshimoto E, Kondo S
    • Journal Title

      PNAS vol.104,no.12

      Pages: 4790-4793

    • Peer Reviewed
  • [Journal Article] Functional diversification of kir7. 1 in cichlids accelerated by gene duplication2007

    • Author(s)
      Watanabe M, Hiraide K,, Okada N
    • Journal Title

      GENE 399

      Pages: 46-52

    • Peer Reviewed
  • [Journal Article] たかがゲノムされどゲノム2007

    • Author(s)
      近藤滋
    • Journal Title

      現代科学

      Pages: 46-47

  • [Journal Article] 振動現象の生物学:リズムと波が生み出す動的な世界2007

    • Author(s)
      近藤滋
    • Journal Title

      細胞工学 vol.26,no.7

  • [Journal Article] Pigment Pattern in jaguar/obelix zebrafish is caused by a Kir7. 1 mutation:implications for the regulation of melanosome movement2006

    • Author(s)
      Iwashita M, Watanabe M, Ishii M, Chen T, Stephen L. Johnson, Kurachi Y, Okada N, Kondo S
    • Journal Title

      PlosGenetics 2(11)

      Pages: e197

    • Peer Reviewed
  • [Journal Article] Noise-resistant and synchronized oscillation of the segmentation clock2006

    • Author(s)
      Horikawa K, Ishimatsu K, Yoshimoto E, Kondo S, Takeda H
    • Journal Title

      Nature 441

      Pages: 719-723

    • Peer Reviewed
  • [Journal Article] Spot pattern of leopard Danio is caused by mutation in the zebrafish connexin41. 8 gene2006

    • Author(s)
      Watanabe M, Iwashita M, Ishii M, Kurachi Y, Kawakami A, Kondo S, Okada N
    • Journal Title

      EMBO Rep. 7(9)

      Pages: 893-897

    • Peer Reviewed
  • [Journal Article] 私が名付けた遺伝子hagoromo2006

    • Author(s)
      川上浩一
    • Journal Title

      実験医学 24,4

      Pages: 540-542

  • [Journal Article] Transposon-mediated gene trapping in zebrafish2006

    • Author(s)
      Kotani T, Nagayoshi S, Urasaki A, Kawakami K
    • Journal Title

      Methods 39

      Pages: 199-206

    • Peer Reviewed
  • [Journal Article] Functional dissection of the Tol2 transposable element identified the minimal cis-sequence and a highly repetitive sequence in the subterminal region essential for transposition2006

    • Author(s)
      Urasaki A, Morvan G, Kawakami K
    • Journal Title

      Genetics 174

      Pages: 639-649

    • Peer Reviewed
  • [Journal Article] Cell-cell Interaction Network That Generates the Skin Pattern of animal2005

    • Author(s)
      Kondo S
    • Journal Title

      Genome Informatics 2005 vol.16,No.2

      Pages: 287-291

  • [Journal Article] Pigment cell Distributions in Different Tissues of the Zebrafish, With Special Reference to the Sriped Pigment Pattern2005

    • Author(s)
      Hirata M, Nakamura K, Kondo S
    • Journal Title

      Dev. Dyn 234

      Pages: 293-300

    • Peer Reviewed
  • [Journal Article] Transposon tools and methods in zebrafish2005

    • Author(s)
      Kawakami K
    • Journal Title

      Developmental Dynamics

      Pages: 244-254

    • Peer Reviewed
  • [Journal Article] Turing波2004

    • Author(s)
      近藤滋
    • Journal Title

      生体の科学 55巻5号

      Pages: 498-499

  • [Journal Article] 生物のパターン形成と振動現象2004

    • Author(s)
      近藤滋
    • Journal Title

      計測と制御 vol.43

      Pages: 594-598

  • [Journal Article] ゼブラフィッシュの時空間特異的遺伝子発現2004

    • Author(s)
      小谷友也、川上浩一
    • Journal Title

      蛋白質核酸酵素 49

      Pages: 2111-2116

  • [Journal Article] Transgenesis and gene trap methods in zebrafish by using the Tol2 transposable element2004

    • Author(s)
      Kawakami K
    • Journal Title

      Methods in Cell Biolog 77

      Pages: 201-222

  • [Presentation] From gene to function a quest with a transposon2010

    • Author(s)
      Kawakami K
    • Organizer
      zebrafish 2010 11th Australia& NewZealand Workshop
    • Place of Presentation
      Sydney, Australia
    • Year and Date
      2010-02-03
  • [Presentation] Transposon-mediated gene trapping, enhancer trapping and insertional mutagenesis2009

    • Author(s)
      Kawakami K
    • Organizer
      The4th Asia- Oceania Zebrafish Meeting
    • Place of Presentation
      済州島, 韓国
    • Year and Date
      20090831-20090902
  • [Presentation] Functional analysis of Zebrafish connexin41. 8 for pattern formation2009

    • Author(s)
      Watanabe M
    • Organizer
      6th European Zebrafish Genetics and Development Meeting
    • Place of Presentation
      Roma, Italy
    • Year and Date
      20090715-20090719
  • [Presentation] Tol2-mediated transgenesis in zebrafish and mice2009

    • Author(s)
      Kawakami K
    • Organizer
      Conference on Genome Engineering
    • Place of Presentation
      Minneapolis, USA
    • Year and Date
      20090621-20090626
  • [Presentation] Turing pattern in the skin of animals2009

    • Author(s)
      Kondo S
    • Organizer
      Gordon Research Conference
    • Place of Presentation
      Boston, USA
    • Year and Date
      20090621-20090626
  • [Presentation] Genetic methods using the Tol2 transposable element in zebrafish2009

    • Author(s)
      Kawakami K
    • Organizer
      International symposium on Marine Genomics 2009
    • Place of Presentation
      沖縄県那覇市
    • Year and Date
      2009-12-16
  • [Presentation] Connexin41. 8による体表模様の制御2009

    • Author(s)
      渡邉正勝
    • Organizer
      第32回日本分子生物学会
    • Place of Presentation
      神奈川県横浜市
    • Year and Date
      2009-12-10
  • [Presentation] コネキシンはゼブラフィッシュのストライプ幅も規定する2009

    • Author(s)
      渡邉正勝
    • Organizer
      日本動物学会第80回大会静岡
    • Place of Presentation
      静岡県静岡市
    • Year and Date
      2009-09-19
  • [Presentation] Connexin41. 8 contributes melanophore development in zebrafish2009

    • Author(s)
      Watanabe M
    • Organizer
      第36回国際生理学会世界大会
    • Place of Presentation
      京都府京都市
    • Year and Date
      2009-07-30
  • [Presentation] Recent advances in the Tol2 transposon technology in zebrafish2009

    • Author(s)
      Kawakami K
    • Organizer
      3rd Strategic Conference of Zebrafish Investigators
    • Place of Presentation
      Asilomar, USA
    • Year and Date
      2009-01-24
  • [Presentation] Interactions among the zebrafish pigment cells that makes the stripe pattern2008

    • Author(s)
      Kondo S
    • Organizer
      IPCC-IMRC2008
    • Place of Presentation
      Sapporo, Japan
    • Year and Date
      20080507-20080512
  • [Presentation] Pigment Pattern Formation in Zebrafish2008

    • Author(s)
      近藤滋、渡邉正勝
    • Organizer
      BMB2008 (第31回日本分子生物学会年会・第81回日本生化学会大会合同大会)
    • Place of Presentation
      神戸市
    • Year and Date
      2008-12-10
  • [Presentation] Multi-Cell Simulations of Gastrulation and Somitogenesis in Chick2008

    • Author(s)
      Kondo S
    • Organizer
      Mathematical Biosciences Institute Workshop
    • Place of Presentation
      Ohio, USA
    • Year and Date
      2008-11-18
  • [Presentation] Cell-cell interaction network that generates the skin pattern of zebrafish2008

    • Author(s)
      Kondo S
    • Organizer
      Frontiers in Development Biology
    • Place of Presentation
      Gien, France
    • Year and Date
      2008-09-16
  • [Presentation] イオンの波がゼブラフィッシュのストライプ形成に重要である2008

    • Author(s)
      近藤滋、渡邉正勝
    • Organizer
      日本動物学会第79回大会
    • Place of Presentation
      福岡市
    • Year and Date
      2008-09-05
  • [Presentation] Zebras did not get the stripes, but lost the uniform color2008

    • Author(s)
      Kondo S
    • Organizer
      Annual Meeting of Society for Mathematical Biology Conference
    • Place of Presentation
      oronto, Canada
    • Year and Date
      2008-08-01
  • [Presentation] nteraction Network of Pigment Cells Generates the Stripes in Animal's Skin2008

    • Author(s)
      Kondo S
    • Organizer
      2nd International Systems Radiation Biology Workshop
    • Place of Presentation
      Washington DC, USA
    • Year and Date
      2008-01-25
  • [Presentation] ゼブラフィッシュの黒色素胞に自己集合しようとする性質があるか?2007

    • Author(s)
      近藤滋、高橋豪
    • Organizer
      第21回日本色素細胞学会年次学術大会
    • Place of Presentation
      愛知県豊明市
    • Year and Date
      2007-12-08
  • [Presentation] 皮膚に発生する化学反応の波=動物の模様2007

    • Author(s)
      近藤滋
    • Organizer
      第6回皮膚科EBMフォーラム
    • Place of Presentation
      北海道札幌市
    • Year and Date
      2007-07-14
  • [Presentation] Nonlinear dynamics in biological pattern formation Interactions between pigment cells give rise to Turing patterns in zebrafish2007

    • Author(s)
      Kondo S
    • Organizer
      Shanghai NSA'07
    • Place of Presentation
      Shanghai, China
    • Year and Date
      2007-06-07
  • [Presentation] 動物の皮膚にできる移動波と定在波2007

    • Author(s)
      近藤滋
    • Organizer
      日本物理学会2007年春季大会
    • Place of Presentation
      鹿児島県鹿児島市
    • Year and Date
      2007-03-19
  • [Presentation] Interactions among the pigment cells give rise to the Turing2006

    • Author(s)
      Kondo S
    • Organizer
      pattern in the skin of zebrafish, 20th IUBMB
    • Place of Presentation
      Kyoto, Japan
    • Year and Date
      20060618-20060623
  • [Presentation] How does the developmental system reduce the effect of noise?-A case study in the segmentation clock2006

    • Author(s)
      石松愛、堀川一樹、吉元英一、近藤滋、武田洋幸
    • Organizer
      日本発生生物学会第39回大会
    • Place of Presentation
      広島県広島市
    • Year and Date
      2006-06-01
  • [Presentation] Interactions among the pigment cells of zebrafish give rise to Turing Pattern2005

    • Author(s)
      Kondo S
    • Organizer
      PACIFICHEM
    • Place of Presentation
      Hawaii, USA
    • Year and Date
      20051215-20051220
  • [Presentation] Interactions among the pigment cells that give raise to the stripe pattern2005

    • Author(s)
      Kondo S
    • Organizer
      2005 West Coast Zebrafish Meeting
    • Place of Presentation
      Eugene, USA
    • Year and Date
      20050909-20050910
  • [Book] Essential zebrafish method: genetics and genomics2009

    • Author(s)
      Kawakami K
    • Total Pages
      153-173
    • Publisher
      Academic Press
  • [Remarks]

    • URL

      http://www.fbs.osaka-u.ac.jp/labs/skondo/

URL: 

Published: 2011-06-18   Modified: 2016-04-21  

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