先進ゲノム解析研究推進プラットフォーム

2020 Fiscal Year Annual Research Report

• Project/Area Number: 16H06279
• Research Institution: National Institute of Genetics
• Principal Investigator: 小原 雄治 国立遺伝学研究所, 先端ゲノミクス推進センター, 特任教授
• Project Period (FY): 2016 – 2021
• Keywords: 次世代DNAシーケンサー / 新規ゲノム配列決定 / リシーケンシング / エピゲノム / RNA-Seq / 1細胞解析 / メタゲノム解析 / スーパーコンピューター

Outline of Annual Research Achievements

①総括支援活動では、応募の機会増加の要望に応えるため今年度から年2回の公募とした。その結果、合計466の応募課題があり、207課題(44%)を採択した。コロナ禍の影響の中、昨年度より応募数は100件近く増加したが、支援内容の精査や支援経費の限度額設定等により、40%超の採択率を維持した。審査委員はすべてプラットフォーム外の専門家とし、評価が同程度の場合は若手、女性、少額科研費からの課題、初めての応募課題を優先した。支援課題は科研費生物系のほぼすべての分野に渡っており、支援の成果を含む論文として2020年度に161報が発表された。この中には「単核貪食細胞系の分化における遺伝子発現制御機構の包括的解明」(Nature Immunol.)、「キンギョの変異体の表現型多様性を作り上げる分子機構の理解」(Current Biol.)、「植物二次代謝経路のゲノム進化に学ぶ生合成デザイン」(Nature Comm.)など広い分野でのレベルの高い成果が含まれている。拡大班会議や情報解析講習会はオンサイト開催が必要なためにコロナ禍の中で見送ったが、WEB開催としたヒトゲノム研究倫理を考える会は5回開催し、各回約500名が参加した。
②大規模配列解析拠点ネットワーク支援活動においては、最先端技術を支援に提供するとともに、染色体レベルの高精度ゲノム配列決定、シングルセル・空間遺伝子発現解析等の支援技術高度化を進めた。
③高度情報解析支援ネットワーク活動では、支援から浮かび上がった課題を解決するソフトウェアの開発を進め、実際の課題への適用を進めた。2020年度には、超高速相同性検索ソフトウェアPZLASTの開発、Hi-Cデータを使ったゲノムアセンブリソフトウエア、ロングリードシミュレータPBSIM2の開発などを進め、②と合わせて24報の論文を発表した。

Current Status of Research Progress

2: Research has progressed on the whole more than it was originally planned.

Reason

・応募の機会増加が懸案であったが、今年度から年2回の公募を行うことができた。前年度に比べ応募数は100件近く増加し、また支援希望内容も拡大しているが、経費上限の設定や支援内容精査などにより採択率を40%以上に維持することができた。科研費のほぼ全種目から課題採択できており、同程度の評価の場合は若手・女性・少額科研費からの課題及び新たな申請者を優先するなどの措置をとり、多様な課題への支援ができた。選考の過程では、コロナ禍のために審査委員会や支援候補課題のヒアリングなどすべてオンラインで行ない、結果的に双方の負担を減らすことができた。
・コロナ禍のために試料送付の遅れや、支援拠点側の出勤抑制などが見られ、支援の遅れも生じたが、おおむね期間内に支援を完了できた。支援依頼者から要望が高かった拡大班会議と情報解析講習会はオンサイト開催が必要なために見送らざるを得なかったが、支援依頼者が自力で解析できるように解析パイプライン整備を進め支援に供した。
・支援成果を含む論文発表は2020年度は161報と順調に増加した。支援技術の高度化のための活動も大規模DNAシーケンシング支援、高度情報解析支援共に進めることができ、高度化の論文は24報発表した。また情報解析講習会内容をまとめた書籍を刊行し、好評を得ている。
・これらの活動を、当初計画通り国立遺伝学研究所を中核機関として、参加する班員が所属する主な機関を連携機関とする連携ネットワークを形成して進めることができた。

Strategy for Future Research Activity

最終年度になるので、次期体制につながるように以下の方策を進める
・最先端の技術の提供のために、支援拠点における支援技術の高度化を引き続き進める。ゲノム解析は技術進展のスピードが特に速く、2-3年で解析手法が様変わりするために、支援に確実に使われる場合は、最終年度であっても支援機器・技術の整備を工夫して進めていく。
・支援課題の採択率は、現状は予算の制限から40%台にとどまっており、より多い課題の支援が求められる。現状では、各支援課題の支援経費の上限を設けて、これを超す分は経費負担を求める形にすることで、ようやくこの採択率になっている。解析内容を精査する効果はあるが、一方でゲノム解析においては一定規模以上で支援しないと意味のある結果が出ないことも多く、若手をはじめ、経費面で敷居が高くなるケースもある。そのためにも技術高度化により、より効果的な解析技術の整備やコスト削減を図っていく必要がある。他方で、ピーク研究支援を考慮して、よりタイムリーな支援のために、支援経費自己負担で随時応募可能とする制度を整備し、ピーク作りとすそ野拡大のバランスを図る。
・大量データ解析の支援要望はますます増加していることから、解析パイプラインの整備とともに、情報解析講習会の開催を継続拡充する。また、ゲノム解析の感覚を研究者コミュニティに共有してもらうためにも、拡大班会議は重要であり、今後工夫して進めていきたい。また、実際のデータをもとに高度情報解析を行える稀な場であることから、若手の参画やon the job trainingなどを通じてインフォマティックス人材育成を継続する。また、支援で得られたデータの適切な共有/公開を進める。このために支援で得られたヒトゲノムデータはNBDCヒトゲノムDBへの格納が確実になるようにする。ヒトゲノム以外のDNA配列データはDDBJへまず格納し、そこからデータ回収してもらう方式により確実なデータ格納を進める。

Research Products

• [Int'l Joint Research] Baylor College of Medicine/NIH/Duke University School of Medicine(U.S.A.)
  • Country Name: U.S.A.
  • Counterpart Institution: Baylor College of Medicine/NIH/Duke University School of Medicine
  • # of Other Institutions: 6
• [Int'l Joint Research] The University of Queensland/Australian Institute of Marine Science/Commonwealth Scientific and Industrial Research Organisation (CSIRO)(Australia)
  • Country Name: Australia
  • Counterpart Institution: The University of Queensland/Australian Institute of Marine Science/Commonwealth Scientific and Industrial Research Organisation (CSIRO)
  • # of Other Institutions: 2
• [Int'l Joint Research] Universitas Airlangga/Universitas Muhammadiyah Surabaya/University of Indonesia(Indonesia)
  • Country Name: Indonesia
  • Counterpart Institution: Universitas Airlangga/Universitas Muhammadiyah Surabaya/University of Indonesia
  • # of Other Institutions: 2
• [Int'l Joint Research] Max Planck Institute of Molecular Cell Biology and Genetics/Helmholtz Center for Infection Research (HZI)/University of Wurzburg(Germany)
  • Country Name: Germany
  • Counterpart Institution: Max Planck Institute of Molecular Cell Biology and Genetics/Helmholtz Center for Infection Research (HZI)/University of Wurzburg
  • # of Other Institutions: 1
• [Int'l Joint Research] MRC London Institute of Medical Sciences (LMS)/University of Cambridge/University of Nottingham(UNITED KINGDOM)
  • Country Name: UNITED KINGDOM
  • Counterpart Institution: MRC London Institute of Medical Sciences (LMS)/University of Cambridge/University of Nottingham
  • # of Other Institutions: 1
• [Int'l Joint Research]
  • # of Other Countries: 23
• [Journal Article] Regulatory mechanism underlying plant tip growth inferred from conchocelis growth of the red alga Neopyropia yezoensis (2021)
  • Author(s): Mizuho Shimada, Nagisa Takada, Yuji Hiwatashi
  • Journal Title: Algal Resources Volume: 13 Pages: 33-39
  • DOI: 10.20804/jsap.13.2_33
  • Peer Reviewed / Open Access
• [Journal Article] Comparative analysis using the draft genome sequence of California poppy (Eschscholzia californica) for exploring the candidate genes involved in benzylisoquinoline alkaloid biosynthesis (2021)
  • Author(s): Yasuyuki Yamada, Hideki Hirakawa, Kentaro Hori, Yohei Minakuchi, Atsushi Toyoda, Nobukazu Shitan, Fumihiko Sato
  • Journal Title: Bioscience, Biotechnology, and Biochemistry Volume: 85 Pages: 851-859
  • DOI: 10.1093/bbb/zbaa091
  • Peer Reviewed / Open Access
• [Journal Article] Collective nuclear behavior shapes bilateral nuclear symmetry for subsequent left-right asymmetric morphogenesis in Drosophila (2021)
  • Author(s): Dongsun Shin, Mitsutoshi Nakamura, Yoshitaka Morishita, Mototsugu Eiraku, Tomoko Yamakawa, Takeshi Sasamura, Masakazu Akiyama, Mikiko Inaki, Kenji Matsuno
  • Journal Title: Development Volume: 148 Pages: dev198507.
  • DOI: 10.1242/dev.198507
  • Peer Reviewed / Open Access
• [Journal Article] A spinach genome assembly with remarkable completeness, and its use for rapid identification of candidate genes for agronomic traits. (2021)
  • Author(s): Hideki Hirakawa, Atsushi Toyoda, Takehiko Itoh, Yutaka Suzuki, Atsushi J. Nagano, Suguru Sugiyama, Yasuyuki Onodera
  • Journal Title: DNA Research Volume: 28 Pages: dsab004.
  • DOI: 10.1093/dnares/dsab004
  • Peer Reviewed / Open Access
• [Journal Article] Setdla plays pivotal roles for the survival and proliferation of retinal progenitors via histone modifications of Uhrfl (2021)
  • Author(s): Xiaoyue Deng, Toshiro Iwagawa, Masaya Fukushima, Yutaka Suzuki3, and Sumiko Watanabe
  • Journal Title: IOVS Volume: 62 Pages: 1
  • DOI: 10.1167/iovs.62.6.1
  • Peer Reviewed / Open Access
• [Journal Article] “Candidatus Mesenet longicola” : Novel Endosymbionts of Brontispa longissima that Induce Cytoplasmic Incompatibility (2021)
  • Author(s): Shun-ichiro Takano, Yasuhiro Gotoh & Tetsuya Hayashi
  • Journal Title: Microbial Ecology Volume: 82 Issue: 2 Pages: 512-522
  • DOI: 10.1007/s00248-021-01686-y
  • Peer Reviewed / Open Access
• [Journal Article] The full mitochondrial genome sequence of the greater argonaut Argonauta argo (Cephalopoda, Argonautoidea) and its phylogenetic position in Octopodiformes (2021)
  • Author(s): Kazuki Hirota, Masa-aki Yoshida, Takehiko Itoh, Atsushi Toyoda, Davin H. E. Setiamarga
  • Journal Title: Mitochondrial DNA Part B : Resources Volume: 6 Pages: 1451-1453
  • DOI: 10.1080/23802359.2021.1911710
  • Peer Reviewed / Open Access
• [Journal Article] Liquid Biopsy Cell-free DNA Biomarkers in Patients With Oligometastatic Colorectal Cancer Treated by Ablative Radiotherapy (2021)
  • Author(s): MASAKI NAKAMURA, SHUN-ICHIRO KAGEYAMA, MASAHIDE SEKI, AYAKO SUZUKI, MASAYUKI OKUMURA, HIDEHIRO HOJO, ATSUSHI MOTEGI, TETSUO AKIMOTO
  • Journal Title: Anticancer Research Volume: 41 Pages: 829-834
  • DOI: 10.21873/anticanres.14835
  • Peer Reviewed / Open Access
• [Journal Article] Decoding the transcriptome of pre-granulosa cells during the formation of primordial follicles in the mouse (2021)
  • Author(s): Kurumi Fukuda, Masafumi Muraoka, Yuzuru Kato, Yumiko Saga
  • Journal Title: Biology of Reproduction
  • DOI: 10.1093/biolre/ioab065
  • Peer Reviewed
• [Journal Article] Genome-wide survey of tandem repeats by nanopore sequencing shows that disease-associated repeats are more polymorphic in the general population (2021)
  • Author(s): Satomi Mitsuhashi, Martin C. Frith, Naomichi Matsumoto
  • Journal Title: BMC Medical Genomics Volume: 14
  • DOI: 10.1186/s12920-020-00853-3
  • Peer Reviewed / Open Access
• [Journal Article] MCM10 compensates for Myc-induced DNA replication stress in breast cancer stem-like cells (2021)
  • Author(s): Takahiko Murayama, Yasuto Takeuchi, Kaoru Yamawaki, Toyoaki Natsume, Mengjiao Li, Rojas-Chaverra N. Marcela, Yutaka Suzuki, Masato T. Kanemaki, Koji Okamoto, Arinobu Tojo, Noriko Gotoh, et al.
  • Journal Title: Cancer Science Volume: 112 Pages: 1209-1224
  • DOI: 10.1111/cas.14776
  • Peer Reviewed / Open Access
• [Journal Article] Biological significance of KRAS mutant allele expression in ovarian endometriosis (2021)
  • Author(s): Nozomi Yachida, Kosuke Yoshihara, Kazuaki Suda, Hirofumi Nakaoka, Haruka Ueda, Kentaro Sugino, Ryo Tamura, Tatsuya Ishiguro, Hiroaki Kase, Teiichi Motoyama, Takayuki Enomoto, et al.
  • Journal Title: Cancer Science
  • DOI: 10.1111/cas.14871
  • Peer Reviewed / Open Access
• [Journal Article] MeCP2 controls neural stem cell fate specification through miR-199a-mediated inhibition of BMP- Smad signaling (2021)
  • Author(s): Nakashima H., Tsujimura K., Irie K., Imamura T., Trujillo CA., Ishizu M., Uesaka M., Pan M., Noguchi H., Okata K., Aoyagi K., Ando-Noda T., Okano H., Muotri AR., Nakashima K.
  • Journal Title: Cell Reports
  • Peer Reviewed / Open Access / Int'l Joint Research
• [Journal Article] Genomic profiling reveals heterogeneous populations of ductal carcinoma in situ of the breast (2021)
  • Author(s): Satoi Nagasawa, Yuta Kuze, Ichiro Maeda, Yasuyuki Kojima, Ai Motoyoshi, Tatsuya Onishi, Hibiki Seino, Ayako Suzuki, Masahide Seki, Eisuke Inoue, Koichiro Tsugawa, Tomohiko Ohta, Yutaka Suzuki, et al.
  • Journal Title: Communications Biology Volume: 4
  • DOI: 10.1038/s42003-021-01959-9
  • Peer Reviewed / Open Access
• [Journal Article] A corset function of exoskeletal ECM promotes body elongation in Drosophila (2021)
  • Author(s): Reiko Tajiri, Haruhiko Fujiwara, Tetsuya Kojima
  • Journal Title: Communications Biology Volume: 4 Pages: 88
  • DOI: 10.1038/s42003-020-01630-9
  • Peer Reviewed / Open Access
• [Journal Article] De novo genome assembly of two tomato ancestors, Solanum pimpinellifolium and Solanum lycopersicum var. cerasiforme, by long-read sequencing (2021)
  • Author(s): Hitomi Takei, Kenta Shirasawa, Kosuke Kuwabara, Atsushi Toyoda, Yuma Matsuzawa, Shinji Iioka, Tohru Ariizumi
  • Journal Title: DNA Research Volume: 28
  • DOI: 10.1093/dnares/dsaa029
  • Peer Reviewed / Open Access
• [Journal Article] Ezh1 regulates expression of Cpg15/Neuritin in mouse cortical neurons (2021)
  • Author(s): Shun Utsunomiya, Yusuke Kishi, Masafumi Tsuboi, Daichi Kawaguchi, Yukiko Gotoh, Manabu Abe, Kenji Sakimura, Kazuma Maeda, Hiroshi Takemoto
  • Journal Title: Drug Discoveries & Therapeutics
  • DOI: 10.5582/ddt.2021.01017
  • Peer Reviewed / Open Access
• [Journal Article] Characterization of histone H3 lysine 4 and 36 tri-methylation in Brassica rapa L. (2021)
  • Author(s): Mehraj H, Takahashi S, Miyaji N, Akter A, Suzuki Y, Seki M, Dennis ES, Fujimoto R
  • Journal Title: Front Plant Sci
  • DOI: 10.3389/fpls.2021.659634
  • Peer Reviewed / Open Access / Int'l Joint Research
• [Journal Article] Institutional and Social Issues Surrounding Genetic Counselors in Japan : Current Challenges and Implications for the Global Community (2021)
  • Author(s): Yayoi Aizawa, Atsushi Watanabe, Kazuto Kato
  • Journal Title: Frontiers in Genetics Volume: 12
  • DOI: 10.3389/fgene.2021.646177
  • Peer Reviewed / Open Access
• [Journal Article] Frequent Tumor Burden Monitoring of Esophageal Squamous Cell Carcinoma With Circulating Tumor DNA Using Individually Designed Digital Polymerase Chain Reaction (2021)
  • Author(s): Takeshi Iwaya, Fumitaka Endo, Fumiaki Takahashi, Takashi Tokino, Yasushi Sasaki, Satoshi S. Nishizuka
  • Journal Title: Gastroenterology Volume: 160 Pages: 463-465.e4
  • DOI: 10.1053/j.gastro.2020.09.035
  • Peer Reviewed
• [Journal Article] Effects of mitoTALENs-Directed Double-Strand Breaks on Plant Mitochondrial Genomes (2021)
  • Author(s): Shin-ichi Arimura
  • Journal Title: Genes Volume: 12 Pages: 153
  • DOI: 10.3390/genes12020153
  • Peer Reviewed / Open Access
• [Journal Article] Aberrant splicing isoforms detected by full-length transcriptome sequencing as transcripts of potential neoantigens in non-small cell lung cancer (2021)
  • Author(s): Miho Oka, Liu Xu, Toshihiro Suzuki, Toshiaki Yoshikawa, Hiromi Sakamoto, Hayato Uemura, Akiyasu C. Yoshizawa, Yutaka Suzuki, Tetsuya Nakatsura, Yasushi Ishihama, Ayako Suzuki, Masahide Seki
  • Journal Title: Genome Biology Volume: 22
  • DOI: 10.1186/s13059-020-02240-8
  • Peer Reviewed / Open Access
• [Journal Article] Nanopore direct RNA sequencing detects DUX4-activated repeats and isoforms in human muscle cells (2021)
  • Author(s): Satomi Mitsuhashi, So Nakagawa, Mitsuru Sasaki-Honda, Hidetoshi Sakurai, Martin C Frith, Hiroaki Mitsuhashi
  • Journal Title: Human Molecular Genetics
  • DOI: 10.1093/hmg/ddab063
  • Peer Reviewed / Open Access
• [Journal Article] Genetic analyses of a secondary poroma and trichoblastoma in a HRAS-mutated sebaceous nevus (2021)
  • Author(s): Minowa, Tomoyuki ; Kamiya, Takafumi ; Hida, Tokimasa ; Okura, Masae ; Kato, Junji ; Idogawa, Masashi ; Tange, Shoichiro ; Hirano, Tomomi ; Tokino, Takashi ; Uhara, Hisashi,
  • Journal Title: J Dermatol
  • DOI: 10.1111/1346-8138.15919
  • Peer Reviewed / Open Access
• [Journal Article] KDM2B is involved in the epigenetic regulation of TGF-β-induced epithelial-mesenchymal transition in lung and pancreatic cancer cell lines (2021)
  • Author(s): Sasithorn Wanna-Udom, Minoru Terashima, Kusuma Suphakhong, Akihiko Ishimura, Takahisa Takino, Takeshi Suzuki
  • Journal Title: Journal of Biological Chemistry Volume: 296 Pages: 100213
  • DOI: 10.1074/jbc.ra120.015502
  • Peer Reviewed / Open Access
• [Journal Article] Centriole and PCM cooperatively recruit CEP192 to spindle poles to promote bipolar spindle assembly (2021)
  • Author(s): Takumi Chinen, Kaho Yamazaki, Kaho Hashimoto, Ken Fujii, Koki Watanabe, Yutaka Takeda, Shohei Yamamoto, Yuka Nozaki, Yuki Tsuchiya, Daisuke Takao, Daiju Kitagawa
  • Journal Title: Journal of Cell Biology Volume: 220
  • DOI: 10.1083/jcb.202006085
  • Peer Reviewed / Open Access
• [Journal Article] Serum Helicobacter pylori antibody reactivity in seven Asian countries using an automated latex aggregation turbidity assay (2021)
  • Author(s): Junko Akada, Evariste Tshibangu-Kabamba, Vo Phuoc Tuan, Shusaku Kurogi, Yuichi Matsuo, Shamshul Ansari, Dalla Doohan, Bui Hoang Phuc, Phawinee Subsomwong, Yoshio Yamaoka, et al.
  • Journal Title: Journal of Gastroenterology and Hepatology
  • DOI: 10.1111/jgh.15467
  • Peer Reviewed / Int'l Joint Research
• [Journal Article] A global phylogenetic analysis of Japanese tonsil-derived Epstein-Barr virus strains by using viral whole-genome cloning and long-read sequencing (2021)
  • Author(s): Misako Yajima, Risako Kakuta, Yutaro Saito, Shiori Kitaya, Atsushi Toyoda, Kazufumi Ikuta, Jun Yasuda, Nobuo Ohta, and Teru Kanda
  • Journal Title: Journal of General Virology Volume: 102
  • DOI: 10.1099/jgv.0.001549
  • Peer Reviewed
• [Journal Article] オオカミやヤマイヌと呼ばれたシーボルトが残したニホンオオカミ標本の謎 (2021)
  • Author(s): 石黒直隆、松村秀一、寺井洋平、本郷一美
  • Journal Title: Journal of the Japan Veterinary Medical Association
  • Peer Reviewed
• [Journal Article] Comparative genomics of Glandirana rugosa using unsupervised AI reveals a high CG frequency (2021)
  • Author(s): Yukako Katsura, Toshimichi Ikemura, Rei Kajitani, Atsushi Toyoda, Takehiko Itoh, Mitsuaki Ogata, Ikuo Miura, Kennosuke Wada, Yoshiko Wada, Yoko Satta
  • Journal Title: Life Science Alliance Volume: 4 Pages: e202000905
  • DOI: 10.26508/lsa.202000905
  • Peer Reviewed / Open Access
• [Journal Article] Z-ring-associated proteins regulate clustering of the replication terminus-binding protein ZapT in Caulobacter Crescentus. (2021)
  • Author(s): Ozaki Shogo, Wakasugi Yasutaka, Tsutomu Katayama
  • Journal Title: mBio
  • DOI: 10.1128/mBio.02196-20
  • Peer Reviewed / Open Access
• [Journal Article] Draft Genome Sequence of Medusavirus Stheno, Isolated from the Tatakai River of Uji, Japan (2021)
  • Author(s): Koki Yoshida, Ruixuan Zhang, Kimberly G. Garcia, Hisashi Endo, Yasuhiro Gotoh, Tetsuya Hayashi, Masaharu Takemura, Hiroyuki Ogata
  • Journal Title: Microbiology Resource Announcements Volume: 10
  • DOI: 10.1128/mra.01323-20
  • Peer Reviewed / Open Access
• [Journal Article] Association analysis of repetitive elements and R-loop formation across species (2021)
  • Author(s): Chao Zeng, Masahiro Onoguchi, Michiaki Hamada
  • Journal Title: Mobile DNA Volume: 12
  • DOI: 10.1186/s13100-021-00231-5
  • Peer Reviewed / Open Access
• [Journal Article] Genomic Signatures for Species-Specific Adaptation in Lake Victoria Cichlids Derived from Large-Scale Standing Genetic Variation (2021)
  • Author(s): Haruna Nakamura, Mitsuto Aibara, Rei Kajitani, Hillary D J Mrosso, Semvua I Mzighani, Atsushi Toyoda, Takehiko Itoh, Norihiro Okada, Masato Nikaido
  • Journal Title: Molecular Biology and Evolution
  • DOI: 10.1093/molbev/msab084
  • Peer Reviewed / Open Access / Int'l Joint Research
• [Journal Article] A single m6A modification in U6 snRNA diversifies exon sequence at the 5' splice site (2021)
  • Author(s): Yuma Ishigami, Takayuki Ohira, Yui Isokawa, Yutaka Suzuki and Tsutomu Suzuki
  • Journal Title: Nature Communications
  • Peer Reviewed / Open Access
• [Journal Article] Selectivity of mRNA degradation by autophagy in yeast (2021)
  • Author(s): Shiho Makino, Tomoko Kawamata, Shintaro Iwasaki, Yoshinori Ohsumi
  • Journal Title: Nature Communications Volume: 12
  • DOI: 10.1038/s41467-021-22574-6
  • Peer Reviewed / Open Access
• [Journal Article] Genome editing reveals fitness effects of a gene for sexual dichromatism in Sulawesian fishes (2021)
  • Author(s): Satoshi Ansai, Koji Mochida, Shingo Fujimoto, Daniel F. Mokodongan, Bayu Kreshna Adhitya Sumarto, Kawilarang W. A. Masengi, Atsushi Toyoda, Kiyoshi Naruse, Kazunori Yamahira, Jun Kitano, et al.
  • Journal Title: Nature Communications Volume: 12
  • DOI: 10.1038/s41467-021-21697-0
  • Peer Reviewed / Open Access / Int'l Joint Research
• [Journal Article] Rpd3/CoRest-mediated activity-dependent transcription regulates the flexibility in memory updating in Drosophila (2021)
  • Author(s): Mai Takakura, Reiko Nakagawa, Takeshi Ota, Yoko Kimura, Man Yung NG, Abdalla G. Alia, Hiroyuki Okuno, Yukinori Hirano
  • Journal Title: Nature Communications Volume: 12
  • DOI: 10.1038/s41467-021-20898-x
  • Peer Reviewed / Open Access
• [Journal Article] Chromosome-level genome assembly of Ophiorrhiza pumila reveals the evolution of camptothecin biosynthesis (2021)
  • Author(s): Amit Rai, Hideki Hirakawa, Ryo Nakabayashi, Shinji Kikuchi, Koki Hayashi, Megha Rai, Hiroshi Tsugawa, Taiki Nakaya, Atsushi Toyoda, Shoko Hikosaka, Eiji Goto, Kazuki Saito, Mami Yamazaki, et al.
  • Journal Title: Nature Communications Volume: 12
  • DOI: 10.1038/s41467-020-20508-2
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• [Journal Article] Long-read metagenomics using PromethION uncovers oral bacteriophages and their interaction with host bacteria (2021)
  • Author(s): Koji Yahara, Masato Suzuki, Aki Hirabayashi, Wataru Suda, Masahira Hattori, Yutaka Suzuki, Yusuke Okazaki
  • Journal Title: Nature Communications Volume: 12
  • DOI: 10.1038/s41467-020-20199-9
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• [Journal Article] A RUNX-CBF β-driven enhancer directs the Irf8 dose-dependent lineage choice between DCs and monocytes (2021)
  • Author(s): Koichi Murakami, Haruka Sasaki, Akira Nishiyama, Daisuke Kurotaki, Wataru Kawase, Tatsuma Ban, Jun Nakabayashi, Satoko Kanzaki, Yoichi Sekita, Hideaki Nakajima, Keiko Ozato, Tohru Kimura, Tomohiko Tamura
  • Journal Title: Nature Immunology Volume: 22 Pages: 301-311
  • DOI: 10.1038/s41590-021-00871-y
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• [Journal Article] Hamster PIWI proteins bind to piRNAs with stage-specific size variations during oocyte maturation (2021)
  • Author(s): Kyoko Ishino, Hidetoshi Hasuwa, Jun Yoshimura, Yuka W Iwasaki, Hidenori Nishihara, Naomi M Seki, Yasubumi Sakakibara, Atsushi Toyoda, Takehiko Itoh, Mikiko C Siomi, Shinichi Morishita, Haruhiko Siomi, et al.
  • Journal Title: Nucleic Acids Research Volume: 49 Pages: 2700-2720
  • DOI: 10.1093/nar/gkab059
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• [Journal Article] How plants grow under gravity conditions besides 1 g : perspectives from hypergravity and space experiments that employ bryophytes as a model organism (2021)
  • Author(s): Atsushi Kume, Hiroyuki Kamachi, Yusuke Onoda, Yuko T. Hanba, Yuji Hiwatashi, Ichirou Karahara, Tomomichi Fujita
  • Journal Title: Plant Molecular Biology
  • DOI: 10.1007/s11103-021-01146-8
  • Peer Reviewed
• [Journal Article] Molecular dissection of haustorium development in Orobanchaceae parasitic plants (2021)
  • Author(s): Kaori Miyashima Furuta, Lei Xiang, Songkui Cui, Satoko Yoshida
  • Journal Title: Plant Physiology
  • DOI: 10.1093/plphys/kiab153
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• [Journal Article] Investigating the mitochondrial genomic landscape of Arabidopsis thaliana by long-read sequencing (2021)
  • Author(s): Bansho Masutani, Shin-ichi Arimura, Shinichi Morishita
  • Journal Title: PLOS Computational Biology Volume: 17 Pages: e1008597
  • DOI: 10.1371/journal.pcbi.1008597
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• [Journal Article] Genome-wide analysis of long noncoding RNAs, 24-nt siRNAs, DNA methylation and H3K27me3 marks in Brassica rapa (2021)
  • Author(s): Hasan Mehraj, Daniel J. Shea, Satoshi Takahashi, Naomi Miyaji, Ayasha Akter, Motoaki Seki, Elizabeth S. Dennis, Ryo Fujimoto, Kenji Osabe
  • Journal Title: PLOS ONE Volume: 16 Pages: e0242530
  • DOI: 10.1371/journal.pone.0242530
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• [Journal Article] Substantial anti-gout effect conferred by common and rare dysfunctional variants of URAT1/SLC22A12 (2021)
  • Author(s): Yu Toyoda, Yusuke Kawamura, Akiyoshi Nakayama, Hirofumi Nakaoka, Toshihide Higashino, Seiko Shimizu, Ituro Inoue, Kimiyoshi Ichida, Hiroshi Suzuki, Tappei Takada, Hirotaka Matsuo, et al.
  • Journal Title: Rheumatology
  • DOI: 10.1093/rheumatology/keab327
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• [Journal Article] Global identification of RsmA/N binding sites in Pseudomonas aeruginosa by in vivo UV CLIP-seq (2021)
  • Author(s): Kotaro Chihara, Lars Barquist, Kenichi Takasugi, Naohiro Noda, Satoshi Tsuneda
  • Journal Title: RNA Biology
  • DOI: 10.1080/15476286.2021.1917184
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• [Journal Article] Vasculature-driven stem cell population coordinates tissue scaling in dynamic organs (2021)
  • Author(s): R. Ichijo, M. Kabata, H. Kidoya, F. Muramatsu, R. Ishibashi, K. Abe, K. Tsutsui, H. Kubo, Y. Iizuka, S. Kitano, H. Miyachi, Y. Kubota, H. Fujiwara, A. Sada, T. Yamamoto, F. Toyoshima
  • Journal Title: Science Advances Volume: 7 Pages: eabd2575
  • DOI: 10.1126/sciadv.abd2575
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• [Journal Article] Genetic switch in UV response of mimicry-related pale-yellow colors in Batesian mimic butterfly, Papilio polytes (2021)
  • Author(s): Shinichi Yoda, Kousuke Sakakura, Tasuku Kitamura, Yûsuke KonDo, Kazuki Sato, Ryosuke Ohnuki, Itsuki Someya, Shinya Komata, Tetsuya Kojima, Shinya Yoshioka, Haruhiko Fujiwara
  • Journal Title: Science Advances Volume: 7 Pages: eabd6475
  • DOI: 10.1126/sciadv.abd6475
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• [Journal Article] Sparsely methylated mitochondrial cell free DNA released from cardiomyocytes contributes to systemic inflammatory response accompanied by atrial fibrillation (2021)
  • Author(s): Masahiro Yamazoe, Tetsuo Sansano, Kensuke Ihara, Kentaro Takahashi, Wakana Nakamura, Naomi Takahashi, Hiroaki Komuro, Satomi Hamada, Tetsushi Furukawa
  • Journal Title: Scientific Reports Volume: 11
  • DOI: 10.1038/s41598-021-85204-7
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• [Journal Article] Genomics and transcriptomics of the green mussel explain the durability of its byssus (2021)
  • Author(s): Koji Inoue, Yuki Yoshioka, Hiroyuki Tanaka, Azusa Kinjo, Mieko Sassa, Ikuo Ueda, Chuya Shinzato, Atsushi Toyoda, Takehiko Itoh
  • Journal Title: Scientific Reports Volume: 11
  • DOI: 10.1038/s41598-021-84948-6
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• [Journal Article] Helicobacter pylori type 4 secretion systems as gastroduodenal disease markers (2021)
  • Author(s): Bui Hoang Phuc, Vo Phuoc Tuan, Ho Dang Quy Dung, Tran Thanh Binh, Pham Huu Tung, Tran Dinh Tri, Ngo Phuong Minh Thuan, Vu Van Khien, Takeshi Matsumoto, Yoshio Yamaoka, et al.
  • Journal Title: Scientific Reports Volume: 11
  • DOI: 10.1038/s41598-021-83862-1
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• [Journal Article] BMP signaling suppresses Gemcl expression and ependymal differentiation of mouse telencephalic progenitors (2021)
  • Author(s): Hanae Omiya, Shima Yamaguchi, Tomoyuki Watanabe, Takaaki Kuniya, Yujin Harada, Daichi Kawaguchi, Yukiko Gotoh
  • Journal Title: Scientific Reports Volume: 11 Pages: 613
  • DOI: 10.1038/s41598-020-79610-6
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• [Journal Article] Comparative Analysis of Patient-Matched PDOs Revealed a Reduction in OLFM4-Associated Clusters in Metastatic Lesions in Colorectal Cancer (2021)
  • Author(s): Takuya Okamoto, David duVerle, Katsuyuki Yaginuma, Yasuko Natsume, Hitomi Yamanaka, Daisuke Kusama, Mayuko Fukuda, Mayuko Yamamoto, Yutaka Suzuki, Satoshi Nagayama, Ryoji Yao, et al.
  • Journal Title: Stem Cell Reports
  • DOI: 10.1016/j.stemcr.2021.02.012
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• [Journal Article] Ligand-receptor interactions in plant hormone signaling (2021)
  • Author(s): Jun Takeuchi, Kosuke Fukui, Yoshiya Seto, Yousuke Takaoka, Masanori Okamoto
  • Journal Title: The Plant Journal Volume: 105 Pages: 290-306
  • DOI: 10.1111/tpj.15115
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• [Journal Article] Transcript Identification Through Long-Read Sequencing (2021)
  • Author(s): Masahide Seki, Miho Oka, Liu Xu, Ayako Suzuki, Yutaka Suzuki
  • Journal Title: Methods in Molecular Biology Volume: 2284 Pages: 531-541
  • DOI: 10.1007/978-1-0716-1307-8_29
• [Journal Article] The validation of the Helicobacter pylori CagA typing by immunohistochemidstry : nationwide application in Indonesia (2020)
  • Author(s): Muhammad Miftahussurur, Dalla Doohan, Ari Fahrial Syam, Iswan Abbas Nusi, Langgeng Agung Waskito, Kartika Afrida Fauzia, Yudith Annisa Ayu Rezkitha, Tomohisa Uchida, Yoshio Yamaoka, et al.
  • Journal Title: Acta Histochemica Volume: 122 Pages: 151594
  • DOI: 10.1016/j.acthis.2020.151594
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• [Journal Article] Gastric mucosal microbiota in a Mongolian population with gastric cancer and precursor conditions (2020)
  • Author(s): Boldbaatar Gantuya, Hashem B. E1 Serag, Takashi Matsumoto, Nadim J. Ajami, Tomohisa Uchida, Khasag Oyuntsetseg, Dashdorj Bolor, Yoshio Yamaoka
  • Journal Title: Alimentary Pharmacology & Therapeutics Volume: 51 Pages: 770-780
  • DOI: 10.1111/apt.15675
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• [Journal Article] A GWAS approach to find SNPs associated with salt removal in rice leaf sheath (2020)
  • Author(s): Sarin Neang, Marjorie de Ocampo, James A Egdane, John Damien Platten, Abdelbagi M Ismail, Masahide Seki, Yutaka Suzuki, Nicola Stephanie Skoulding, Mana Kano-Nakata, Akira Yamauchi, Shiro Mitsuya
  • Journal Title: Annals of Botany Volume: 126 Pages: 1193-1202
  • DOI: 10.1093/aob/mcaa139
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• [Journal Article] Finding the direct optimal RNA barrier energy and improving pathways with an arbitrary energy model (2020)
  • Author(s): Hiroki Takizawa, Junichi Iwakiri, Goro Terai, Kiyoshi Asai
  • Journal Title: Bioinformatics Volume: 36 Pages: i227-i235
  • DOI: 10.1093/bioinformatics/btaa469
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• [Journal Article] HiC-Hiker : a probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C (2020)
  • Author(s): Ryo Nakabayashi, Shinichi Morishita
  • Journal Title: Bioinformatics Volume: 36 Pages: 3966-3974
  • DOI: 10.1093/bioinformatics/btaa288
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• [Journal Article] Finding long tandem repeats in long noisy reads (2020)
  • Author(s): Shinichi Morishita, Kazuki Ichikawa, Eugene W Myers
  • Journal Title: Bioinformatics
  • DOI: 10.1093/bioinformatics/btaa865
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• [Journal Article] PBSIM2 : a simulator for long-read sequencers with a novel generative model of quality scores (2020)
  • Author(s): Yukiteru Ono, Kiyoshi Asai, Michiaki Hamada
  • Journal Title: Bioinformatics
  • DOI: 10.1093/bioinformatics/btaa835
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• [Journal Article] A Four-Dimensional Organoid System to Visualize Cancer Cell Vascular Invasion (2020)
  • Author(s): Kiminori Yanagisawa, Masamitsu Konno, Hao Liu, Shinji Irie, Tsunekazu Mizushima, Masaki Mori, Yuichiro Doki, Hidetoshi Eguchi, Michiya Matsusaki, Hideshi Ishii
  • Journal Title: Biology Volume: 9 Pages: 361
  • DOI: 10.3390/biology9110361
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• [Journal Article] Heterogeneous fluid-like movements of chromatin and their implications to transcription. (2020)
  • Author(s): Ashwin SS, Maeshima K, Sasai M.
  • Journal Title: Biophys Rev. Volume: 12 Issue: 2 Pages: 461-468
  • DOI: 10.1007/s12551-020-00675-8
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• [Journal Article] RintC : fast and accuracy-aware decomposition of distributions of RNA secondary structures with extended logsumexp (2020)
  • Author(s): Hiroki Takizawa, Junichi Iwakiri, Kiyoshi Asai
  • Journal Title: BMC Bioinformatics Volume: 21
  • DOI: 10.1186/s12859-020-3535-5
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• [Journal Article] MoAIMS : efficient software for detection of enriched regions of MeRIP-Seq (2020)
  • Author(s): Yiqian Zhang, Michiaki Hamada
  • Journal Title: BMC Bioinformatics Volume: 21 Pages: 103
  • DOI: 10.1186/s12859-020-3430-0
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• [Journal Article] Multiple waves of freshwater colonization of the three-spined stickleback in the Japanese Archipelago (2020)
  • Author(s): Ryo Kakioka, Seiichi Mori, Tomoyuki Kokita, Takuya K. Hosoki, Atsushi J. Nagano, Asano Ishikawa, Manabu Kume, Atsushi Toyoda, Jun Kitano
  • Journal Title: BMC Evolutionary Biology Volume: 20
  • DOI: 10.1186/s12862-020-01713-5
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• [Journal Article] An improved de novo genome assembly of the common marmoset genome yields improved contiguity and increased mapping rates of sequence data (2020)
  • Author(s): Vasanthan Jayakumar, Hiromi Ishii, Misato Seki, Wakako Kumita, Takashi Inoue, Sumitaka Hase, Kengo Sato, Hideyuki Okano, Erika Sasaki, Yasubumi Sakakibara
  • Journal Title: BMC Genomics Volume: 21 Pages: 243
  • DOI: 10.1186/s12864-020-6657-2
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• [Journal Article] Tissue-specific expression analysis of Na+ and C1- transporter genes associated with salt removal ability in rice leaf sheath (2020)
  • Author(s): Sarin Neang, Itsuki Goto, Nicola Stephanie Skoulding, Joyce A. Cartagena, Mana Kano-Nakata, Akira Yamauchi, Shiro Mitsuya
  • Journal Title: BMC Plant Biology Volume: 20
  • DOI: 10.1186/s12870-020-02718-4
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• [Journal Article] One-carbon metabolism for cancer diagnostic and therapeutic approaches (2020)
  • Author(s): Ayumu Asai, Masamitsu Konno, Jun Koseki, Masateru Taniguchi, Andrea Vecchione, Hideshi Ishii
  • Journal Title: Cancer Letters Volume: 470 Pages: 141-148
  • DOI: 10.1016/j.canlet.2019.11.023
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• [Journal Article] Clonal lineage from normal endometrium to ovarian clear cell carcinoma through ovarian endometriosis (2020)
  • Author(s): Kazuaki Suda, Luis Antonio Cruz Diaz, Kosuke Yoshihara, Hirofumi Nakaoka, Nozomi Yachida, Teiichi Motoyama, Ituro Inoue, Takayuki Enomoto
  • Journal Title: Cancer Science Volume: 111 Pages: 3000-3009
  • DOI: 10.1111/cas.14507
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• [Journal Article] Combination of KRAS and SMAD4 mutations in formalin-fixed paraffin-embedded tissues as a biomarker for pancreatic cancer (2020)
  • Author(s): Takahiro Yokose, Minoru Kitago, Sachiko Matsuda, Yasushi Sasaki, Yohei Masugi, Yuki Nakamura, Masahiro Shinoda, Hiroshi Yagi, Takashi Tokino, Yuko Kitagawa, et al.
  • Journal Title: Cancer Science Volume: 111 Pages: 2174-2182
  • DOI: 10.1111/cas.14425
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• [Journal Article] Pathogenesis of multiple pancreatic cancers involves multicentric carcinogenesis and intrapancreatic metastasis (2020)
  • Author(s): Yusuke Fujita, Sachiko Matsuda, Yasushi Sasaki, Yohei Masugi, Minoru Kitago, Hiroshi Yagi, Yuta Abe, Masahiro Shinoda, Takashi Tokino, Michiie Sakamoto, Yuko Kitagawa
  • Journal Title: Cancer Science Volume: 111 Pages: 739-748
  • DOI: 10.1111/cas.14268
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• [Journal Article] Essentiality of CENP-A Depends on Its Binding Mode to HJURP (2020)
  • Author(s): Tetsuya Hori, JingHui Cao, Kohei Nishimura, Mariko Ariyoshi, Yasuhiro Arimura, Hitoshi Kurumizaka, Tatsuo Fukagawa
  • Journal Title: Cell Reports Volume: 33 Pages: 108388
  • DOI: 10.1016/j.celrep.2020.108388
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• [Journal Article] Setdla Insufficiency in Mice Attenuates Excitatory Synaptic Function and Recapitulates Schizophrenia-Related Behavioral Abnormalities (2020)
  • Author(s): Kenichiro Nagahama, Kazuto Sakoori, Takaki Watanabe, Yusuke Kishi, Keita Kawaji, Michinori Koebis, Kazuki Nakao, Yukiko Gotoh, Atsu Aiba, Naofumi Uesaka, Masanobu Kano
  • Journal Title: Cell Reports Volume: 32 Pages: 108126
  • DOI: 10.1016/j.celrep.2020.108126
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• [Journal Article] Multiomics Investigation Revealing the Characteristics of HIV-1-Infected Cells In Vivo (2020)
  • Author(s): Hirofumi Aso, Shumpei Nagaoka, Eiryo Kawakami, Jumpei Ito, Saiful Islam, Benjy Jek Yang Tan, Shinji Nakaoka, Koichi Ashizaki, Katsuyuki Shiroguchi, Yutaka Suzuki, Yorifumi Satou, Yoshio Koyanagi, Kei Sato
  • Journal Title: Cell Reports Volume: 32 Pages: 107887
  • DOI: 10.1016/j.celrep.2020.107887
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• [Journal Article] Systematic Analysis of Targets of Pumilio-mediated mRNA Decay Reveals that PUM1 Repression by DNA Damage Activates Translesion Synthesis (2020)
  • Author(s): Yamada T., Imamachi N., Imamura K., Taniue K., Kawamura T., Suzuki Y., Nagahama M., Akimitsu N.
  • Journal Title: Cell Reports Volume: 31 Pages: 107542
  • DOI: 10.1016/j.celrep.2020.107542
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• [Journal Article] RNA Recognition and Immunity-Innate Immune Sensing and Its Posttranscriptional Regulation Mechanisms (2020)
  • Author(s): Takuya Uehata, Osamu Takeuchi
  • Journal Title: Cells Volume: 9 Pages: 1701
  • DOI: 10.3390/cells9071701
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• [Journal Article] Immuno-Surgical Management of Pancreatic Cancer with Analysis of Cancer Exosomes (2020)
  • Author(s): Yu Takeda, Shogo Kobayashi, Masatoshi Kitakaze, Daisaku Yamada, Hirofumi Akita, Ayumu Asai, Masamitsu Konno, Takahiro Arai, Yuichiro Doki, Hidetoshi Eguchi, Hideshi Ishii, et al.
  • Journal Title: Cells Volume: 9 Pages: 1645
  • DOI: 10.3390/cells9071645
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• [Journal Article] The effects of codon bias and optimality on mRNA and protein regulation (2020)
  • Author(s): Fabian Hia, Osamu Takeuchi
  • Journal Title: Cellular and Molecular Life Sciences Volume: 78 Pages: 1909-1928
  • DOI: 10.1007/s00018-020-03685-7
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• [Journal Article] Functional Role of the L396R Mutation of Tks5 Identified by an Exome-Wide Association Study in Atrial Fibrillation (2020)
  • Author(s): Xiaoxi Yang, Tetsuo Sasano, Yusuke Ebana, Jun K. Takeuchi, Kensuke Ihara, Masahiro Yamazoe, Tetsushi Furukawa
  • Journal Title: Circulation Journal Volume: 84 Pages: 2148-2157
  • DOI: 10.1253/circj.cj-20-0101
  • Peer Reviewed
• [Journal Article] Granulocyte-colony stimulating factor-producing uterine cervical cancer treated with chemoradiotherapy : A case report with mutation analysis and literature review (2020)
  • Author(s): Shintaro Shiba, Takahiro Oike, Ken Ando, Yuya Yoshimoto, Yoshiyasu Takayama, Tatsuya Ohno
  • Journal Title: Clinical Case Reports Volume: 9 Pages: 185-192
  • DOI: 10.1002/ccr3.3495
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• [Journal Article] Ancient Jomon genome sequence analysis sheds light on migration patterns of early East Asian populations (2020)
  • Author(s): Takashi Gakuhari, Shigeki Nakagome, Simon Rasmussen, Morten E. Allentoft, Takehiro Sato, Thorfinn Korneliussen, Atsushi Toyoda, Tsunehiko Hanihara, Eske Willerslev, Martin Sikora, Hiroki Oota, et al.
  • Journal Title: Communications Biology Volume: 3
  • DOI: 10.1038/s42003-020-01162-2
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• [Journal Article] The Genetic Basis of Morphological Diversity in Domesticated Goldfish (2020)
  • Author(s): Tetsuo Kon, Yoshihiro Omori, Kentaro Fukuta, Hironori Wada, Masakatsu Watanabe, Zelin Chen, Miki Iwasaki, Atsushi Toyoda, Shawn M. Burgess, Hideki Noguchi, Takahisa Furukawa, et al.
  • Journal Title: Current Biology Volume: 30 Pages: 2260-2274.e6
  • DOI: 10.1016/j.cub.2020.04.034
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• [Journal Article] Genetic and structural analysis of the in vivo functional redundancy between murine NANOS2 and NANOS3 (2020)
  • Author(s): Danelle Wright, Makoto Kiso, Yumiko Saga
  • Journal Title: Development Volume: 148 Pages: dev191916
  • DOI: 10.1242/dev.191916
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• [Journal Article] An auxin transport network underlies xylem bridge formation between the hemi-parasitic plant Phtheirospermum japonicum and host Arabidopsis (2020)
  • Author(s): Takanori Wakatake, Satoshi Ogawa, Satoko Yoshida, Ken Shirasu
  • Journal Title: Development Volume: 147 Pages: dev187781
  • DOI: 10.1242/dev.187781
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• [Journal Article] A genome database for a Japanese population of the larvacean Oikopleura dioica (2020)
  • Author(s): Kai Wang, Ryo Tomura, Wei Chen, Miho Kiyooka, Hinako Ishizaki, Tomoyuki Aizu, Yohei Minakuchi, Masahide Seki, Yutaka Suzuki, Takehiko Itoh, Atsushi Toyoda, Hiroki Nishida, Takeshi A. Onuma, et al.
  • Journal Title: Development, Growth & Differentiation Volume: 62 Pages: 450-461
  • DOI: 10.1111/dgd.12689
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• [Journal Article] Notch signaling (2020)
  • Author(s): Kenji Matsuno
  • Journal Title: Development, Growth & Differentiation Volume: 62
  • DOI: 10.1111/dgd.12642
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• [Journal Article] State-of-the-Art Technology of Model Organisms for Current Human Medicine (2020)
  • Author(s): Masamitsu Konno, Ayumu Asai, Toru Kitagawa, Masami Yabumoto, Ken Ofusa, Takahiro Arai, Takaaki Hirotsu, Yuichiro Doki, Hidetoshi Eguchi, Hideshi Ishii
  • Journal Title: Diagnostics Volume: 10 Pages: 392
  • DOI: 10.3390/diagnostics10060392
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• [Journal Article] The physiological potential of anammox bacteria as revealed by their core genome structure (2020)
  • Author(s): Takashi Okubo, Atsushi Toyoda, Kohei Fukuhara, Ikuo Uchiyama, Yuhki Harigaya, Megumi Kuroiwa, Takuma Suzuki, Yuka Murakami, Yuichi Suwa, Hideto Takami
  • Journal Title: DNA Research Volume: 28
  • DOI: 10.1093/dnares/dsaa028
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• [Journal Article] Comparative genomic analyses illuminate the distinct evolution of megabats within Chiroptera (2020)
  • Author(s): Masato Nikaido, Shinji Kondo, Zicong, Zhang, Jiaqi Wu, Hidenori Nishihara, Yoshihito Niimura, Yutaka Suzuki, Atsushi Toyoda, Asao Fujiyama, Sumio Sugano, Misako Yoneda, Chieko Kai, et al.
  • Journal Title: DNA Research Volume: 27
  • DOI: 10.1093/dnares/dsaa021
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• [Journal Article] Profibrotic function of pulmonary group 2 innate lymphoid cells is controlled by Regnase-1 (2020)
  • Author(s): Yoshinari Nakatsuka, Ai Yaku, Tomohiro Handa, Alexis Vandenbon, Yuki Hikichi, Yasutaka Motomura, Yutaka Suzuki, Takuya Uehata, Takashi Mino, Tohru Tsujimura, Kazuyo Moro, Osamu Takeuchi, et al.
  • Journal Title: European Respiratory Journal Volume: 57 Pages: 2000018
  • DOI: 10.1183/13993003.00018-2020
  • Peer Reviewed
• [Journal Article] Integrative genomic phylogeography reveals signs of mitonuclear incompatibility in a natural hybrid goby population (2020)
  • Author(s): Shotaro Hirase, Ayumi Tezuka, Atsushi J. Nagano, Mana Sato, Sho Hosoya, Kiyoshi Kikuchi, Wataru Iwasaki
  • Journal Title: Evolution Volume: 75 Pages: 176-194
  • DOI: 10.1111/evo.14120
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• [Journal Article] Single-cell sequencing techniques from individual to multiomics analyses (2020)
  • Author(s): Yukie Kashima, Yoshitaka Sakamoto, Keiya Kaneko, Masahide Seki, Yutaka Suzuki, Ayako Suzuki
  • Journal Title: Experimental & Molecular Medicine Volume: 52 Pages: 1419-1427
  • DOI: 10.1038/s12276-020-00499-2
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• [Journal Article] Ten Years of Provenance Trials and Application of Multivariate Random Forests Predicted the Most Preferable Seed Source for Silviculture of Abies sachalinensis in Hokkaido, Japan (2020)
  • Author(s): Ikutaro Tsuyama, Wataru Ishizuka, Keiko Kitamura, Haruhiko Taneda, Susumu Goto
  • Journal Title: Forests Volume: 11 Pages: 1058
  • DOI: 10.3390/f11101058
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• [Journal Article] Role of BgaA as a Pneumococcal Virulence Factor Elucidated by Molecular Evolutionary Analysis (2020)
  • Author(s): Masaya Yamaguchi, Moe Takemura, Kotaro Higashi, Kana Goto, Yujiro Hirose, Tomoko Sumitomo, Masanobu Nakata, Narikazu Uzawa, Shigetada Kawabata
  • Journal Title: Frontiers in Microbiology Volume: 11
  • DOI: 10.3389/fmicb.2020.582437
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• [Journal Article] Corrigendum : Networking and Specificity-Changing DNA Methyltransferases in Helicobacter pylori (2020)
  • Author(s): Hirokazu Yano, Md. Zobaidul Alam, Emiko Rimbara, Tomoko F. Shibata, Masaki Fukuyo, Yoshikazu Furuta, Atsushi Toyoda, Yutaka Suzuki, Sumio Sugano, Keigo Shibayama, Ichizo Kobayashi, et al.
  • Journal Title: Frontiers in Microbiology Volume: 11
  • DOI: 10.3389/fmicb.2020.596598
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• [Journal Article] Genomic and Physiological Characteristics of a Novel Nitrite-Oxidizing Nitrospira Strain Isolated From a Drinking Water Treatment Plant (2020)
  • Author(s): Hirotsugu Fujitani, Kengo Momiuchi, Kento Ishii, Manami Nomachi, Shuta Kikuchi, Norisuke Ushiki, Yuji Sekiguchi, Satoshi Tsuneda
  • Journal Title: Frontiers in Microbiology Volume: 11
  • DOI: 10.3389/fmicb.2020.545190
  • Peer Reviewed / Open Access
• [Journal Article] Networking and Specificity-Changing DNA Methyltransferases in Helicobacter pylori (2020)
  • Author(s): Hirokazu Yano, Md. Zobaidul Alam, Emiko Rimbara, Tomoko F. Shibata, Masaki Fukuyo, Yoshikazu Furuta, Atsushi Toyoda, Yutaka Suzuki, Sumio Sugano, Keigo Shibayama, Ichizo Kobayashi, et al.
  • Journal Title: Frontiers in Microbiology Volume: 11
  • DOI: 10.3389/fmicb.2020.01628
  • Peer Reviewed / Open Access
• [Journal Article] Diploid Male Gametes Circumvent Hybrid Sterility Between Asian and African Rice Species (2020)
  • Author(s): Daichi Kuniyoshi, Itaru Masuda, Yoshitaka Kanaoka, Yuki Shimazaki-Kishi, Yoshihiro Okamoto, Hideshi Yasui, Toshio Yamamoto, Kiyotaka Nagaki, Yoichiro Hoshino, Yohei Koide, Itsuro Takamure, Yuji Kishima
  • Journal Title: Frontiers in Plant Science Volume: 11
  • DOI: 10.3389/fpls.2020.579305
  • Peer Reviewed / Open Access
• [Journal Article] Fertile Tetraploids : New Resources for Future Rice Breeding? (2020)
  • Author(s): Yohei Koide, Daichi Kuniyoshi, Yuji Kishima
  • Journal Title: Frontiers in Plant Science Volume: 11
  • DOI: 10.3389/fpls.2020.01231
  • Peer Reviewed / Open Access
• [Journal Article] Parallelized Latent Dirichlet Allocation Provides a Novel Interpretability of Mutation Signatures in Cancer Genomes (2020)
  • Author(s): Taro Matsutani, Michiaki Hamada
  • Journal Title: Genes Volume: 11 Pages: 1127
  • DOI: 10.3390/genes11101127
  • Peer Reviewed / Open Access
• [Journal Article] RNA-Seq Analysis Reveals Localization-Associated Alternative Splicing across 13 Cell Lines (2020)
  • Author(s): Chao Zeng, Michiaki Hamada
  • Journal Title: Genes Volume: 11 Pages: 820
  • DOI: 10.3390/genes11070820
  • Peer Reviewed / Open Access
• [Journal Article] m6A demethylase ALKBH5 promotes proliferation of esophageal squamous cell carcinoma associated with poor prognosis (2020)
  • Author(s): Yushi Nagaki, Satoru Motoyama, Tomokazu Yamaguchi, Midori Hoshizaki, Yusuke Sato, Teruki Sato, Yukio Koizumi, Akiyuki Wakita, Yuta Kawakita, Yoshihiro Minamiya, Keiji Kuba, et al.
  • Journal Title: Genes to Cells Volume: 25 Pages: 547-561
  • DOI: 10.1111/gtc.12792
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• [Journal Article] H3K27me3 demethylase UTX regulates the differentiation of a subset of bipolar cells in the mouse retina. (2020)
  • Author(s): Umutoni, D., Iwagawa, T., Baba, Y., Tsuhako, A., Honda, H., Aihara, M, Watanabe, S.
  • Journal Title: Genes to Cells Volume: 25 Pages: 402-412
  • DOI: 10.1111/gtc.12767
  • Peer Reviewed / Open Access
• [Journal Article] mRNA Editing, Processing and Quality Control in Caenorhabditis elegans (2020)
  • Author(s): Joshua A. Arribere, Hidehito Kuroyanagi, Heather A. Hundley
  • Journal Title: Genetics Volume: 215 Pages: 531-568
  • DOI: 10.1534/genetics.119.301807
  • Peer Reviewed / Int'l Joint Research
• [Journal Article] A pipeline for complete characterization of complex germline rearrangements from long DNA reads (2020)
  • Author(s): Satomi Mitsuhashi, Sachiko Ohori, Kazutaka Katoh, Martin C. Frith, Naomichi Matsumoto
  • Journal Title: Genome Medicine Volume: 12
  • DOI: 10.1186/s13073-020-00762-1
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• [Journal Article] Long-read sequencing for non-small-cell lung cancer genomes (2020)
  • Author(s): Yoshitaka Sakamoto, Liu Xu, Masahide Seki, Toshiyuki T. Yokoyama, Masahiro Kasahara, Yukie Kashima, Akihiro Ohashi, Yoko Shimada, Takashi Kohno, Yuichi Shiraishi, Ayako Suzuki, Yutaka Suzuki, et al.
  • Journal Title: Genome Research Volume: 30 Pages: 1243-1257
  • DOI: 10.1101/gr.261941.120
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• [Journal Article] Metabolic labeling of RNA using multiple ribonucleoside analogs enables the simultaneous evaluation of RNA synthesis and degradation rates (2020)
  • Author(s): Kentaro Kawata, Hiroyasu Wakida, Toshimichi Yamada, Kenzui Taniue, Han Han, Masahide Seki, Yutaka Suzuki, Nobuyoshi Akimitsu
  • Journal Title: Genome Research Volume: 30 Pages: 1481-1491
  • DOI: 10.1101/gr.264408.120
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• [Journal Article] Epigenetic regulation for acquiring glial identity by neural stem cells during cortical development (2020)
  • Author(s): Takumi Nakagawa, Yoshikuni Wada, Sayako Katada, Yusuke Kishi
  • Journal Title: Glia Volume: 68 Pages: 1554-1567
  • DOI: 10.1002/glia.23818
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• [Journal Article] Mutation profiling of uterine cervical cancer patients treated with definitive radiotherapy (2020)
  • Author(s): Yuya Yoshimoto, Yasushi Sasaki, Kazutoshi Murata, Shin-ei Noda, Yuhei Miyasaka, Junko Hamamoto, Mio Furuya, Junko Hirato, Yoshiyuki Suzuki, Tatsuya Ohno, Takashi Tokino, Takahiro Oike, Takashi Nakano
  • Journal Title: Gynecologic Oncology Volume: 159 Pages: 546-553
  • DOI: 10.1016/j.ygyno.2020.08.020
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• [Journal Article] Gastric microbiota and Helicobacter pylori in Indonesian population (2020)
  • Author(s): Muhammad Miftahussurur, Langgeng Agung Waskito, Hashem B E1-Serag, Nadim J. Ajami, Iswan Abbas Nusi, Ari Fahrial Syam, Titong Sugihartono, Tomohisa Uchida, Yoshio Yamaoka, et al.
  • Journal Title: Helicobacter Volume: 25 Pages: e12695
  • DOI: 10.1111/hel.12695
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• [Journal Article] Population-based study of Helicobacter pylori infection and antibiotic resistance in Bhutan (2020)
  • Author(s): Ratha-korn Vilaichone, Natsuda Aumpan, Thawee Ratanachu-ek, Tomohisa Uchida, Lotay Tshering, Varocha Mahachai, Yoshio Yamaoka
  • Journal Title: International Journal of Infectious Diseases Volume: 97 Pages: 102-107
  • DOI: 10.1016/j.ijid.2020.05.077
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• [Journal Article] Helicobacter pylori Virulence Factor Cytotoxin-Associated Gene A (CagA)-Mediated Gastric Pathogenicity (2020)
  • Author(s): Shamshul Ansari, Yoshio Yamaoka
  • Journal Title: International Journal of Molecular Sciences Volume: 21 Pages: 7430
  • DOI: 10.3390/ijms21197430
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• [Journal Article] Roles of ASYMMETRIC LEAVES2 (AS2) and Nucleolar Proteins in the Adaxial-Abaxial Polarity Specification at the Perinucleolar Region in Arabidopsis (2020)
  • Author(s): Hidekazu Iwakawa, Hiro Takahashi, Yasunori Machida, Chiyoko Machida
  • Journal Title: International Journal of Molecular Sciences Volume: 21 Pages: 7314
  • DOI: 10.3390/ijms21197314
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• [Journal Article] Convolutional Neural Network Can Recognize Drug Resistance of Single Cancer Cells (2020)
  • Author(s): Kiminori Yanagisawa, Masayasu Toratani, Ayumu Asai, Masamitsu Konno, Hirohiko Niioka, Tsunekazu Mizushima, Taroh Satoh, Jun Miyake, Kazuhiko Ogawa, Andrea Vecchione, Yuichiro Doki, Hidetoshi Eguchi, Hideshi Ishii
  • Journal Title: International Journal of Molecular Sciences Volume: 21 Pages: 3166
  • DOI: 10.3390/ijms21093166
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• [Journal Article] COVID-19 Drug Discovery Using Intensive Approaches (2020)
  • Author(s): Ayumu Asai, Masamitsu Konno, Miyuki Ozaki, Chihiro Otsuka, Andrea Vecchione, Takahiro Arai, Toru Kitagawa, Ken Ofusa, Masami Yabumoto, Takaaki Hirotsu, Masateru Taniguchi, Hidetoshi Eguchi, Yuichiro Doki, Hideshi Ishii
  • Journal Title: International Journal of Molecular Sciences Volume: 21 Pages: 2839
  • DOI: 10.3390/ijms21082839
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• [Journal Article] Environmental Atlas of Prokaryotes Enables Powerful and Intuitive Habitat-Based Analysis of Community Structures (2020)
  • Author(s): Kazumori Mise, Wataru Iwasaki
  • Journal Title: iScience Volume: 23 Pages: 101624
  • DOI: 10.1016/j.isci.2020.101624
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• [Journal Article] Notch and Delta Control the Switch and Formation of Camouflage Patterns in Caterpillars (2020)
  • Author(s): Hongyuan Jin, Shinichi Yoda, Liang Liu, Tetsuya Kojima, Haruhiko Fujiwara
  • Journal Title: iScience Volume: 23 Pages: 101315
  • DOI: 10.1016/j.isci.2020.101315
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• [Journal Article] The centriole protein CEP76 negatively regulates PLK1 activity in the cytoplasm for proper mitotic progression (2020)
  • Author(s): Yutaka Takeda, Kaho Yamazaki, Kaho Hashimoto, Koki Watanabe, Takumi Chinen, Daiju Kitagawa
  • Journal Title: Journal of Cell Science Volume: 133 Pages: jcs241281
  • DOI: 10.1242/jcs.241281
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• [Journal Article] Free-Energy Calculation of Ribonucleic Inosines and Its Application to Nearest-Neighbor Parameters (2020)
  • Author(s): Shun Sakuraba, Junichi Iwakiri, Michiaki Hamada, Tomoshi Kameda, Genichiro Tsuji, Yasuaki Kimura, Hiroshi Abe, Kiyoshi Asai
  • Journal Title: Journal of Chemical Theory and Computation Volume: 16 Pages: 5923-5935
  • DOI: 10.1021/acs.jctc.0c00270
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• [Journal Article] Patterns of genomic divergence and introgression between Japanese stickleback species with overlapping breeding habitats (2020)
  • Author(s): Mark Ravinet, Manabu Kume, Asano Ishikawa, Jun Kitano
  • Journal Title: Journal of Evolutionary Biology Volume: 34 Pages: 114-127
  • DOI: 10.1111/jeb.13664
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• [Journal Article] Differences in the contributions of sex linkage and androgen regulation to sex-biased gene expression in juvenile and adult sticklebacks (2020)
  • Author(s): Jun Kitano, Ryo Kakioka, Asano Ishikawa, Atsushi Toyoda, Makoto Kusakabe
  • Journal Title: Journal of Evolutionary Biology Volume: 33 Pages: 1129-1138
  • DOI: 10.1111/jeb.13662
  • Peer Reviewed
• [Journal Article] Loss-of-function variants in NEK1 are associated with an increased risk of sporadic ALS in the Japanese population (2020)
  • Author(s): Hiroya Naruse, Hiroyuki Ishiura, Jun Mitsui, Yuji Takahashi, Takashi Matsukawa, Jun Yoshimura, Koichiro Doi, Shinichi Morishita, Jun Goto, Tatsushi Toda, Shoji Tsuji
  • Journal Title: Journal of Human Genetics Volume: 66 Pages: 237-241
  • DOI: 10.1038/s10038-020-00830-9
  • Peer Reviewed / Open Access
• [Journal Article] Targeted deep sequencing of DNA from multiple tissue types improves the diagnostic rate and reveals a highly diverse phenotype of mosaic neurofibromatosis type 2 (2020)
  • Author(s): Yu Teranishi, Satoru Miyawaki, Hiroki Hongo, Shogo Dofuku, Atsushi Okano, Shunsaku Takayanagi, Takahiro Ota, Jun Yoshimura, Wei Qu, Jun Mitsui, Hirofumi Nakatomi, Shinichi Morishita, Shoji Tsuji, Nobuhito Saito
  • Journal Title: Journal of Medical Genetics
  • DOI: 10.1136/jmedgenet-2020-106973
  • Peer Reviewed
• [Journal Article] Bioinformatics Approaches for Functional Prediction of Long Noncoding RNAs (2020)
  • Author(s): Fayaz Seifuddin, Mehdi Pirooznia
  • Journal Title: Methods in Molecular Biology Volume: 2254 Pages: 1-13
  • DOI: 10.1007/978-1-0716-1158-6_1
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• [Journal Article] Differential dynamics and impacts of prophages and plasmids on the pangenome and virulence factor repertoires of Shiga toxin-producing Escherichia coli 0145 : H28 (2020)
  • Author(s): Keiji Nakamura, Kazunori Murase, Mitsuhiko P. Sato, Atsushi Toyoda, Takehiko Itoh, Jacques Georges Mainil, Denis Piérard, Shuji Yoshino, Yasuhiro Gotoh, Yoshitoshi Ogura, Tetsuya Hayashi, et al.
  • Journal Title: Microbial Genomics Volume: 6
  • DOI: 10.1099/mgen.0.000323
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• [Journal Article] Complete Genome Sequence of Helicobacter pylori Strain ATCC 43504, a Type Strain That Can Infect Gerbils (2020)
  • Author(s): Ryo Kinoshita-Daitoku, Yoshitoshi Ogura, Kotaro Kiga, Fumito Maruyama, Tomoyo Kondo, Ichiro Nakagawa, Tetsuya Hayashi, Hitomi Mimuro
  • Journal Title: Microbiology Resource Announcements Volume: 9
  • DOI: 10.1128/mra.00105-20
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• [Journal Article] A ubiquitous subcuticular bacterial symbiont of a coral predator, the crown-of-thorns starfish, in the Indo-Pacific (2020)
  • Author(s): Naohisa Wada, Hideaki Yuasa, Rei Kajitani, Yasuhiro Gotoh, Yoshitoshi Ogura, Dai Yoshimura, Atsushi Toyoda, Sen-Lin Tang, Takehiko Itoh, Tetsuya Hayashi, Nina Yasuda, et al.
  • Journal Title: Microbiome Volume: 8
  • DOI: 10.1186/s40168-020-00880-3
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• [Journal Article] Revealing the microbial assemblage structure in the human gut microbiome using latent Dirichlet allocation (2020)
  • Author(s): Shion Hosoda, Suguru Nishijima, Tsukasa Fukunaga, Masahira Hattori, Michiaki Hamada
  • Journal Title: Microbiome Volume: 8
  • DOI: 10.1186/s40168-020-00864-3
  • Peer Reviewed / Open Access
• [Journal Article] High Antibiotic Resistance of Helicobacter pylori and Its Associated Novel Gene Mutations among the Mongolian Population (2020)
  • Author(s): Dashdorj Azzaya, Boldbaatar Gantuya, Khasag Oyuntsetseg, Duger Davaadorj, Takashi Matsumoto, Junko Akada, Yoshio Yamaoka
  • Journal Title: Microorganisms Volume: 8 Pages: 1062
  • DOI: 10.3390/microorganisms8071062
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• [Journal Article] Next-Generation Sequencing of the Whole Bacterial Genome for Tracking Molecular Insight into the Broad-Spectrum Antimicrobial Resistance of Helicobacter pylori Clinical Isolates from the Democratic Republic of Congo (2020)
  • Author(s): Evariste Tshibangu-Kabamba, Patrick de Jesus Ngoma-Kisoko, Vo Phuoc Tuan, Takashi Matsumoto, Junko Akada, Yasutoshi Kido, Ghislain Disashi-Tumba, Yoshio Yamaoka, et al.
  • Journal Title: Microorganisms Volume: 8 Pages: 887
  • DOI: 10.3390/microorganisms8060887
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• [Journal Article] Autocrine Leukemia Inhibitory Factor Promotes Esophageal Squamous Cell Carcinoma Progression via Src Family Kinase-Dependent Yes-Associated Protein Activation (2020)
  • Author(s): Tetsuro Kawazoe, Hiroshi Saeki, Eiji Oki, Yoshinao Oda, Yoshihiko Maehara, Masaki Mori, Koji Taniguchi
  • Journal Title: Molecular Cancer Research Volume: 18 Pages: 1876-1888
  • DOI: 10.1158/1541-7786.mcr-20-0186
  • Peer Reviewed
• [Journal Article] Genomic Profiling by ALaP-Seq Reveals Transcriptional Regulation by PML Bodies through DNMT3A Exclusion (2020)
  • Author(s): Misuzu Kurihara, Kagayaki Kato, Chiaki Sanbo, Yasuyuki Ohkawa, Takeshi Fuchigami, Yusuke Miyanari
  • Journal Title: Molecular Cell Volume: 78 Pages: 493-505
  • DOI: 10.1016/j.molcel.2020.04.004
  • Peer Reviewed
• [Journal Article] Complete Genome Sequence Data of Nonpathogenic Strain Rhizobium vitis VAR03-1, a Biological Control Agent for Grapevine Crown Gall Disease (2020)
  • Author(s): Yoshiteru Noutoshi, Atsushi Toyoda, Tomoya Ishii, Kirara Saito, Megumi Watanabe, Akira Kawaguchi
  • Journal Title: Molecular Plant-Microbe Interactions® Volume: 33 Pages: 1451-1453
  • DOI: 10.1094/mpmi-07-20-0181-a
  • Peer Reviewed / Open Access
• [Journal Article] Complete Genome Sequence Data of Tumorigenic Rhizobium vitis Strain VAT03-9, a Causal Agent of Grapevine Crown Gall Disease (2020)
  • Author(s): Yoshiteru Noutoshi, Atsushi Toyoda, Tomoya Ishii, Kirara Saito, Megumi Watanabe, Akira Kawaguchi
  • Journal Title: Molecular Plant-Microbe Interactions® Volume: 33 Pages: 1280-1282
  • DOI: 10.1094/mpmi-07-20-0180-a
  • Peer Reviewed / Open Access
• [Journal Article] Complete Genome Sequence Data of Nonpathogenic and Nonantagonistic Strain of Rhizobium vitis VAR06-30 Isolated From Grapevine Rhizosphere (2020)
  • Author(s): Yoshiteru Noutoshi, Atsushi Toyoda, Tomoya Ishii, Kirara Saito, Megumi Watanabe, Akira Kawaguchi
  • Journal Title: Molecular Plant-Microbe Interactions® Volume: 33 Pages: 1283-1285
  • DOI: 10.1094/mpmi-07-20-0182-a
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• [Journal Article] Reconstitution of the oocyte transcriptional network with transcription factors (2020)
  • Author(s): Nobuhiko Hamazaki, Hirohisa Kyogoku, Hiromitsu Araki, Fumihito Miura, Chisako Horikawa, Norio Hamada, So Shimamoto, Orie Hikabe, Kinichi Nakashima, Tomoya S. Kitajima, Takashi Ito, Harry G. Leitch, Katsuhiko Hayashi
  • Journal Title: Nature Volume: 589 Pages: 264-269
  • DOI: 10.1038/s41586-020-3027-9
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• [Journal Article] High-throughput laboratory evolution reveals evolutionary constraints in Escherichia coli (2020)
  • Author(s): Tomoya Maeda, Junichiro Iwasawa, Hazuki Kotani, Natsue Sakata, Masako Kawada, Takaaki Horinouchi, Aki Sakai, Kumi Tanabe, Chikara Furusawa
  • Journal Title: Nature Communications Volume: 11
  • DOI: 10.1038/s41467-020-19713-w
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• [Journal Article] The Polycomb group protein Ringl regulates dorsoventral patterning of the mouse telencephalon (2020)
  • Author(s): Hikaru Eto, Yusuke Kishi, Nayuta Yakushiji-Kaminatsui, Hiroki Sugishita, Shun Utsunomiya, Haruhiko Koseki, Yukiko Gotoh
  • Journal Title: Nature Communications Volume: 11
  • DOI: 10.1038/s41467-020-19556-5
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• [Journal Article] Transient IGF-1R inhibition combined with osimertinib eradicates AXL-low expressing EGFR mutated lung cancer (2020)
  • Author(s): Rong Wang, Tadaaki Yamada, Kenji Kita, Hirokazu Taniguchi, Sachiko Arai, Koji Fukuda, Minoru Terashima, Hisanori Uehara, Xujun Han, Kunio Matsumoto, Wei Wang, Takeshi Suzuki, Seiji Yano, et al.
  • Journal Title: Nature Communications Volume: 11
  • DOI: 10.1038/s41467-020-18442-4
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• [Journal Article] Genome-wide association meta-analysis identifies GP2 gene risk variants for pancreatic cancer (2020)
  • Author(s): Yingsong Lin, Masahiro Nakatochi, Yasuyuki Hosono, Hidemi Ito, Yoichiro Kamatani, Akihito Inoko, Hiromi Sakamoto, Fumihiko Matsuda, Michiaki Kubo, Shogo Kikuchi, Keitaro Matsuo, et al.
  • Journal Title: Nature Communications Volume: 11
  • DOI: 10.1038/s41467-020-16711-w
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• [Journal Article] RNA interference-independent reprogramming of DNA methylation in Arabidopsis (2020)
  • Author(s): Taiko Kim To, Yuichiro Nishizawa, Soichi Inagaki, Yoshiaki Tarutani, Sayaka Tominaga, Atsushi Toyoda, Asao Fujiyama, Fédéric Berger, Tetsuji Kakutani
  • Journal Title: Nature Plants Volume: 6 Pages: 1455-1467
  • DOI: 10.1038/s41477-020-00810-z
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  • Author(s): Hirotaka Kato, Sumanth K. Mutte, Hidemasa Suzuki, Isidro Crespo, Shubhajit Das, Tatyana Radoeva, Mattia Fontana, D. Roeland Boer, Ryuichi Nishihama, Takayuki Kohchi, Dolf Weijers, et al.
  • Journal Title: Nature Plants Volume: 6 Pages: 473-482
  • DOI: 10.1038/s41477-020-0662-y
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• [Journal Article] Aberrant mucosal immunoreaction to tonsillar microbiota in immunoglobulin A nephropathy (2020)
  • Author(s): Hiroki Yamaguchi, Shin Goto, Nao Takahashi, Masafumi Tsuchida, Hirofumi Watanabe, Suguru Yamamoto, Yoshikatsu Kaneko, Koichi Higashi, Hiroshi Mori, Yukio Nakamura, Arata Horii, Ken Kurokawa, Ichiei Narita
  • Journal Title: Nephrology Dialysis Transplantation Volume: 36 Pages: 75-86
  • DOI: 10.1093/ndt/gfaa223
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• [Journal Article] Splice-site mutations in KIF5A in the Japanese case series of amyotrophic lateral sclerosis (2020)
  • Author(s): Hiroya Naruse, Hiroyuki Ishiura, Jun Mitsui, Yuji Takahashi, Takashi Matsukawa, Kaori Sakuishi, Kiyotaka Nakamagoe, Zenshi Miyake, Akira Tamaoka, Shinichi Morishita, Tatsushi Toda, Shoji Tsuji, et al.
  • Journal Title: neurogenetics Volume: 22
  • DOI: 10.1007/s10048-020-00626-1
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• [Journal Article] Orobanchaceae parasite-host interactions (2020)
  • Author(s): J. Musembi Mutuku, Songkui Cui, Satoko Yoshida, Ken Shirasu
  • Journal Title: New Phytologist Volume: 230 Pages: 46-59
  • DOI: 10.1111/nph.17083
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• [Journal Article] The Emerging Role of ncRNAs and RNA-Binding Proteins in Mitotic Apparatus Formation (2020)
  • Author(s): Kei K. Ito, Koki Watanabe, Dai ju Kitagawa
  • Journal Title: Non-Coding RNA Volume: 6 Pages: 13
  • DOI: 10.3390/ncrna6010013
  • Peer Reviewed
• [Journal Article] Exchange of endogenous and heterogeneous yeast terminators in Pichia pastoris to tune mRNA stability and gene expression (2020)
  • Author(s): Yoichiro Ito, Goro Terai, Misa Ishigami, Noriko Hashiba, Yasuyuki Nakamura, Takahiro Bamba, Ryota Kumokita, Tomohisa Hasunuma, Kiyoshi Asai, Jun Ishii, Akihiko Kondo
  • Journal Title: Nucleic Acids Research Volume: 48 Pages: 13000-13012
  • DOI: 10.1093/nar/gkaa1066
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• [Journal Article] Improving the prediction accuracy of protein abundance in Escherichia coli using mRNA accessibility (2020)
  • Author(s): Goro Terai, Kiyoshi Asai
  • Journal Title: Nucleic Acids Research Volume: 48 Pages: e81-e81
  • DOI: 10.1093/nar/gkaa481
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• [Journal Article] Hereditary pancreatitis model by blastocyst complementation in mouse (2020)
  • Author(s): Ayumu Asai, Masamitsu Konno, Koichi Kawamoto, Ayako Isotani, Masaki Mori, Hidetoshi Eguchi, Yuichiro Doki, Takahiro Arai, Hideshi Ishii
  • Journal Title: Oncotarget Volume: 11 Pages: 2061-2073
  • DOI: 10.18632/oncotarget.27595
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• [Journal Article] Escherichia coli 08 : H8 Carrying a Novel Variant of the Heat-Labile Enterotoxin LT2 Gene Caused Outbreaks of Diarrhea (2020)
  • Author(s): Kai Ishimaru, Mari Sasaki, Hiroshi Narimatsu, Yoko Arimizu, Yasuhiro Gotoh, Keiji Nakamura, Tetsuya Hayashi, Yoshitoshi Ogura
  • Journal Title: Open Forum Infectious Diseases Volume: 7 Pages: ofaa021
  • DOI: 10.1093/ofid/ofaa021
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• [Journal Article] Genome-wide patterns of divergence and introgression after secondary contact between Pungitius sticklebacks (2020)
  • Author(s): Yo Y. Yamasaki, Ryo Kakioka, Hiroshi Takahashi, Atsushi Toyoda, Atsushi J. Nagano, Yoshiyasu Machida, Peter R. Moller, Jun Kitano
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  • DOI: 10.1098/rstb.2019.0548
  • Peer Reviewed / Int'l Joint Research
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  • Journal Title: Plant and Cell Physiology Volume: 61 Pages: 1507-1516
  • DOI: 10.1093/pcp/pcaa071
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• [Journal Article] Intellectual disability-associated gain-of-function mutations in CERT1 that encodes the ceramide transport protein CERT (2020)
  • Author(s): Hiroaki Murakami, Norito Tamura, Yumi Enomoto, Kentaro Shimasaki, Kenji Kurosawa, Kentaro Hanada
  • Journal Title: PLOS ONE Volume: 15 Pages: e0243980
  • DOI: 10.1371/journal.pone.0243980
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• [Journal Article] Whole-exome sequencing of 79 xenografts as a potential approach for the identification of genetic variants associated with sensitivity to cytotoxic anticancer drugs (2020)
  • Author(s): Chihiro Udagawa, Yasushi Sasaki, Yasuhiro Tanizawa, Hiroshi Suemizu, Yasuyuki Ohnishi, Yasukazu Nakamura, Takashi Tokino, Hitoshi Zembutsu
  • Journal Title: PLOS ONE Volume: 15 Pages: e0239614
  • DOI: 10.1371/journal.pone.0239614
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• [Journal Article] Serum pepsinogens as a gastric cancer and gastritis biomarker in South and Southeast Asian populations (2020)
  • Author(s): Muhammad Miftahussurur, Langgeng Agung Waskito, Hafeza Aftab, Ratha-korn Vilaichone, Phawinee Subsomwong, Iswan Abbas Nusi, Ari Fahrial Syam, Varocha Mahachai, Yoshio Yamaoka, et al.
  • Journal Title: PLOS ONE Volume: 15 Pages: e0230064
  • DOI: 10.1371/journal.pone.0230064
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• [Journal Article] Non-pathogenic Escherichia coli acquires virulence by mutating a growth-essential LPS transporter (2020)
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  • Journal Title: PLOS Pathogens Volume: 16 Issue: 4 Pages: e1008469
  • DOI: 10.1371/journal.ppat.1008469
  • Peer Reviewed / Open Access
• [Journal Article] HMGB1-mediated chromatin remodeling attenuatesI124gene expression for the protection from allergic contact dermatitis (2020)
  • Author(s): Naoyuki Senda, Hideyuki Yanai, Sana Hibino, Lei Li, Yu Mizushima, Tomomitsu Miyagaki, Mai Saeki, Yusuke Kishi, Sho Hangai, Junko Nishio, Makoto Sugaya, Tadatsugu Taniguchi, Shinichi Sato
  • Journal Title: Proceedings of the National Academy of Sciences Volume: 118 Pages: e2022343118
  • DOI: 10.1073/pnas.2022343118
  • Peer Reviewed
• [Journal Article] Fruit setting rewires central metabolism via gibberellin cascades (2020)
  • Author(s): Yoshihito Shinozaki, Bertrand P. Beauvoit, Masaru Takahara, Shuhei Hao, Kentaro Ezura, Yutaka Suzuki, Satoshi Kuhara, Camille Bénard, Duyen Prodhomme, Yves Gibon, Hiroshi Ezura, Tohru Ariizumi, et al.
  • Journal Title: Proceedings of the National Academy of Sciences Volume: 117 Pages: 23970-23981
  • DOI: 10.1073/pnas.2011859117
  • Peer Reviewed / Int'l Joint Research
• [Journal Article] Rapid and ongoing evolution of repetitive sequence structures in human centromeres (2020)
  • Author(s): Yuta Suzuki, Eugene W. Myers, Shinichi Morishita
  • Journal Title: Science Advances Volume: 6 Pages: eabd9230
  • DOI: 10.1126/sciadv.abd9230
  • Peer Reviewed / Open Access / Int'l Joint Research
• [Journal Article] Ethylene signaling mediates host invasion by parasitic plants (2020)
  • Author(s): Songkui Cui, Tomoya Kubota, Tomoaki Nishiyama, Juliane K. Ishida, Shuji Shigenobu, Tomoko F. Shibata, Atsushi Toyoda, Mitsuyasu Hasebe, Ken Shirasu, Satoko Yoshida
  • Journal Title: Science Advances Volume: 6 Pages: eabc2385
  • DOI: 10.1126/sciadv.abc2385
  • Peer Reviewed / Open Access
• [Journal Article] Staphylococcus Agr virulence is critical for epidermal colonization and associates with atopic dermatitis development (2020)
  • Author(s): Yuumi Nakamura, Hiroki Takahashi, Akiko Takaya, Yuzaburo Inoue, Yuki Katayama, Yoko Kusuya, Tatsuma Shoji, Sanami Takada, Hiroyuki Matsue, Gabriel Núñez, Naoki Shimojo, et al.
  • Journal Title: Science Translational Medicine Volume: 12 Pages: eaay4068
  • DOI: 10.1126/scitranslmed.aay4068
  • Peer Reviewed / Int'l Joint Research
• [Journal Article] Batesian mimicry has evolved with deleterious effects of the pleiotropic gene doublesex (2020)
  • Author(s): Shinya Komata, Tasuku Kitamura, Haruhiko Fujiwara
  • Journal Title: Scientific Reports Volume: 10
  • DOI: 10.1038/s41598-020-78055-1
  • Peer Reviewed / Open Access
• [Journal Article] Expression profiling of sexually dimorphic genes in the Japanese quail, Coturnix japonica (2020)
  • Author(s): Miki Okuno, Shuntaro Miyamoto, Takehiko Itoh, Masahide Seki, Yutaka Suzuki, Shusei Mizushima, Asato Kuroiwa
  • Journal Title: Scientific Reports Volume: 10
  • DOI: 10.1038/s41598-020-77094-y
  • Peer Reviewed / Open Access
• [Journal Article] ARID1A protein expression is retained in ovarian endometriosis with ARID1A loss-of-function mutations : implication for the two-hit hypothesis (2020)
  • Author(s): Nozomi Yachida, Kosuke Yoshihara, Kazuaki Suda, Hirofumi Nakaoka, Haruka Ueda, Kentaro Sugino, Manako Yamaguchi, Yutaro Mori, Kaoru Yamawaki, Ituro Inoue, Takayuki Enomoto, et al.
  • Journal Title: Scientific Reports Volume: 10
  • DOI: 10.1038/s41598-020-71273-7
  • Peer Reviewed / Open Access
• [Journal Article] A possible beneficial effect of Bacteroides on faecal lipopolysaccharide activity and cardiovascular diseases (2020)
  • Author(s): Naofumi Yoshida, Tomoya Yamashita, Shigenobu Kishino, Hikaru Watanabe, Kengo Sasaki, Daisuke Sasaki, Tokiko Tabata, Yuta Sugiyama, Takuji Yamada, Jun Ogawa, Ken-ichi Hirata, et al.
  • Journal Title: Scientific Reports Volume: 10
  • DOI: 10.1038/s41598-020-69983-z
  • Peer Reviewed / Open Access
• [Journal Article] Comprehensive investigation of RNF213 nonsynonymous variants associated with intracranial artery stenosis (2020)
  • Author(s): Hiroki Hongo, Satoru Miyawaki, Hideaki Imai, Masahiro Shimizu, Shinichi Yagi, Jun Mitsui, Hiroyuki Ishiura, Jun Yoshimura, Koichiro Doi, Wei Qu, Shinichi Morishita, Shoji Tsuji, Nobuhito Saito, et al.
  • Journal Title: Scientific Reports Volume: 10
  • DOI: 10.1038/s41598-020-68888-1
  • Peer Reviewed / Open Access
• [Journal Article] Essential factors involved in the precise targeting and insertion of telomere-specific non-LTR retrotransposon, SART1Bm (2020)
  • Author(s): Narisu Nichuguti, Haruhiko Fujiwara
  • Journal Title: Scientific Reports Volume: 10
  • DOI: 10.1038/s41598-020-65925-x
  • Peer Reviewed / Open Access
• [Journal Article] Theoretical analyses and experimental validation of the effects caused by the fluorinated substituent modification of DNA (2020)
  • Author(s): Jun Koseki, Masamitsu Konno, Ayumu Asai, Naohiro Horie, Kenta Tsunekuni, Koichi Kawamoto, Satoshi Obika, Yuichiro Doki, Masaki Mori, Hideshi Ishii
  • Journal Title: Scientific Reports Volume: 10
  • DOI: 10.1038/s41598-020-57899-7
  • Peer Reviewed / Open Access
• [Journal Article] Directed induction of alveolar type I cells derived from pluripotent stem cells via Wnt signaling inhibition (2020)
  • Author(s): Shuhei Kanagaki, Satoshi Ikeo, Takahiro Suezawa, Yuki Yamamoto, Masahide Seki, Toyohiro Hirai, Masatoshi Hagiwara, Yutaka Suzuki, Shimpei Gotoh
  • Journal Title: STEM CELLS Volume: 39 Pages: 156-169
  • DOI: 10.1002/stem.3302
  • Peer Reviewed / Open Access
• [Journal Article] Contrasting Patterns of Microbial Communities in Glacier Cryoconite of Nepali Himalaya and Greenland, Arctic (2020)
  • Author(s): Purnima Singh, Masaharu Tsuji, Shiv Mohan Singh, Nozomu Takeuchi
  • Journal Title: Sustainability Volume: 12 Pages: 6477
  • DOI: 10.3390/su12166477
  • Peer Reviewed / Open Access / Int'l Joint Research
• [Journal Article] Soil Yeasts in the Vicinity of Syowa Station, East Antarctica : Their Diversity and Extracellular Enzymes, Cold Adaptation Strategies, and Secondary Metabolites (2020)
  • Author(s): Masaharu Tsuji, Sakae Kudoh
  • Journal Title: Sustainability Volume: 12 Pages: 4518
  • DOI: 10.3390/su12114518
  • Peer Reviewed / Open Access
• [Journal Article] Statistical Validation Verifies That Enantiomorphic States of Chiral Cells Are Determinant Dictating the Left-or Right-Handed Direction of the Hindgut Rotation in Drosophila (2020)
  • Author(s): Tomoki Ishibashi, Mikiko Inaki, Kenji Matsuno
  • Journal Title: Symmetry Volume: 12 Pages: 1991
  • DOI: 10.3390/sym12121991
  • Peer Reviewed / Open Access
• [Journal Article] NUDT21 Links Mitochondrial IPS-1 to RLR-Containing Stress Granules and Activates Host Antiviral Defense (2020)
  • Author(s): Saeko Aoyama-Ishiwatari, Tomohiko Okazaki, Shun-ichiro Iemura, Tohru Natsume, Yasushi Okada, Yukiko Gotoh
  • Journal Title: The Journal of Immunology Volume: 206 Pages: 154-163
  • DOI: 10.4049/jimmunol.2000306
  • Peer Reviewed / Open Access
• [Journal Article] MeCP2 Levels Regulate the 3D Structure of Heterochromatic Foci in Mouse Neurons (2020)
  • Author(s): Aya Ito-Ishida, Steven A. Baker, Roy V. Sillitoe, Yaling Sun, Jian Zhou, Yukiteru Ono, Junichi Iwakiri, Michisuke Yuzaki, Huda Y. Zoghbi
  • Journal Title: The Journal of Neuroscience Volume: 40 Pages: 8746-8766
  • DOI: 10.1523/jneurosci.1281-19.2020
  • Peer Reviewed / Int'l Joint Research
• [Journal Article] Targeted gene disruption of ATP synthases 6-1 and 6-2 in the mitochondrial genome of Arabidopsis thaliana by mitoTALENs (2020)
  • Author(s): Shin-ichi Arimura, Hiroki Ayabe, Hajime Sugaya, Miki Okuno, Yoshiko Tamura, Yu Tsuruta, Yuta Watari, Shungo Yanase, Takaki Yamauchi, Takehiko Itoh, Atsushi Toyoda, Hideki Takanashi, Nobuhiro Tsutsumi
  • Journal Title: The Plant Journal Volume: 104 Pages: 1459-1471
  • DOI: 10.1111/tpj.15041
  • Peer Reviewed
• [Journal Article] The formation of perinucleolar bodies is important for normal leaf development and requires the zinc-finger DNA-binding motif in Arabidopsis ASYMMETRIC LEAVES2 (2020)
  • Author(s): Lilan Luo, Sayuri Ando, Yuki Sakamoto, Takanori Suzuki, Hiro Takahashi, Nanako Ishibashi, Shoko Kojima, Daisuke Kurihara, Tetsuya Higashiyama, Michiko Sasabe, Yasunori Machida, et al.
  • Journal Title: The Plant Journal Volume: 101 Pages: 1118-1134
  • DOI: 10.1111/tpj.14579
  • Peer Reviewed / Open Access
• [Journal Article] Whole Genome Sequencing Reveals Virulence Potentials of Helicobacter pylori Strain KE21 Isolated from a Kenyan Patient with Gastric Signet Ring Cell Carcinoma (2020)
  • Author(s): Catherine Mwangi, Stephen Njoroge, Evariste Tshibangu-Kabamba, Zahir Moloo, Allan Rajula, Smita Devani, Takashi Matsumoto, Kimang' a Nyerere, Samuel Kariuki, Gunturu Revathi, Yoshio Yamaoka
  • Journal Title: Toxins Volume: 12 Pages: 556
  • DOI: 10.3390/toxins12090556
  • Peer Reviewed / Open Access / Int'l Joint Research
• [Journal Article] Biofilm Formation and Antibiotic Resistance Phenotype of Helicobacter pylori Clinical Isolates (2020)
  • Author(s): Kartika Afrida Fauzia, Muhammad Miftahussurur, Ari Fahrial Syam, Langgeng Agung Waskito, Dalla Doohan, Yudith Annisa Ayu Rezkitha, Takashi Matsumoto, Shigeru Kamiya, Yoshio Yamaoka, et al.
  • Journal Title: Toxins Volume: 12 Pages: 473
  • DOI: 10.3390/toxins12080473
  • Peer Reviewed / Open Access / Int'l Joint Research
• [Journal Article] Discovery of the Gene Encoding a Novel Small Serum Protein (SSP) of Protobothrops flavoviridis and the Evolution of SSPs (2020)
  • Author(s): Kento Inamaru, Ami Takeuchi, Marie Maeda, Hiroki Shibata, Yasuyuki Fukumaki, Naoko Oda-Ueda, Shosaku Hattori, Motonori Ohno, Takahito Chijiwa
  • Journal Title: Toxins Volume: 12 Pages: 177
  • DOI: 10.3390/toxins12030177
  • Peer Reviewed / Open Access
• [Journal Article] RNA N6-Methyladenosine and the Regulation of RNA Localization and Function in the Brain (2020)
  • Author(s): Sachithrani U. Madugalle, Kate Meyer, Dan Ohtan Wang, Timothy W. Bredy
  • Journal Title: Trends in Neurosciences Volume: 43 Pages: 1011-1023
  • DOI: 10.1016/j.tins.2020.09.005
  • Peer Reviewed / Int'l Joint Research
• [Journal Article] Discovery of unique African Helicobacter pylori CagA-multimerization motif in the Dominican Republic (2020)
  • Author(s): Takaaki Ono, Modesto Cruz, Hiroyuki Nagashima, Phawinee Subsomwong, Junko Akada, Takashi Matsumoto, Tomohisa Uchida, Rumiko Suzuki, Celso Hosking, José A Jiménez Abreu, Yoshio Yamaoka
  • Journal Title: World Journal of Gastroenterology Volume: 26 Pages: 7118-7130
  • DOI: 10.3748/wjg.v26.i45.7118
  • Peer Reviewed / Open Access / Int'l Joint Research
• [Journal Article] Analysis of the Mitochondrial Genomes of Japanese Wolf Specimens in the Siebold Collection, Leiden (2020)
  • Author(s): Shuichi Matsumura, Yohey Terai, Hitomi Hongo, Naotaka Ishiguro
  • Journal Title: Zoological Science Volume: 38 Pages: 60-66
  • DOI: 10.2108/zs200019
  • Peer Reviewed / Open Access
• [Journal Article] Cooperation of Spaln and Prrn5 for Construction of Gene-Structure-Aware Multiple Sequence Alignment (2020)
  • Author(s): Osamu Gotoh
  • Journal Title: Methods in Molecular Biology Volume: 2231 Pages: 71-88
  • DOI: 10.1007/978-1-0716-1036-7_5
• [Journal Article] RNA Modifications in the Central Nervous System (2020)
  • Author(s): Dan Ohtan Wang
  • Journal Title: The Oxford Handbook of Neuronal Protein Synthesis
  • DOI: 10.1093/oxfordhb/9780190686307.013.23
  • Open Access
• [Journal Article] 実験用マウスを用いた放射線被ばくの次世代遺伝影響の解析 (2020)
  • Author(s): 佐藤康成、内村有邦
  • Journal Title: 広島医学 Volume: 73 Pages: 228-232
• [Journal Article] 染色体分配に必須なセントロメアのクロマチン構造 (2020)
  • Author(s): 堀哲也, 深川竜郎
  • Journal Title: 細胞 Volume: 52 Pages: 342-347
• [Journal Article] キンギョの多様な表現型と全ゲノム重複 : 疾患モデル動物としての展開 (2020)
  • Author(s): 大森 義裕
  • Journal Title: 生体の科学 Volume: 71 Pages: 68-73
  • DOI: 10.11477/mf.2425201122
• [Journal Article] 長寿フロントラインAlzheimer病剖検脳の神経細胞特異的メチル化解析から明らかになった、神経変性におけるDNA傷害蓄積の重要性 (2020)
  • Author(s): 間野 達雄
  • Journal Title: エイジングアンドヘルス Volume: 93 Pages: 38-41
• [Presentation] Long-read metagenomics using PromethION uncovers oral bacteriophages and their interaction with host bacteria (2021)
  • Author(s): Koji Yahara, Masato Suzuki, Aki Hirabayashi, Wataru Suda, Masahira Hattori, Yutaka Suzuki, Yusuke Okazaki
  • Organizer: Applied Bioinformatics and Public Health Microbiology
  • Int'l Joint Research
• [Presentation] Mechanisms of centriole duplication in human cells (2021)
  • Author(s): 北川大樹
  • Organizer: EMBO Centrosomes and Spindle Pole Bodies meeting
  • Int'l Joint Research / Invited
• [Presentation] Genome of Jomon people and peopling history of East Eurasians (2021)
  • Author(s): Hiroki Oota
  • Organizer: Genome Concept Centennial Conference
  • Int'l Joint Research / Invited
• [Presentation] Genome evolution for cold adaptation in experimental populations of Drosophila albomicans (2021)
  • Author(s): 田村浩一郎
  • Organizer: Genome Concept Centennial Conference
  • Int'l Joint Research / Invited
• [Presentation] Tuning water use efficiency and drought tolerance in wheat using abscisic acid receptors (2021)
  • Author(s): Masanori Okamoto
  • Organizer: International Workshop on Optics, Biology, and Related Technologies
  • Int'l Joint Research / Invited
• [Presentation] Protective effect of common and rare variants of URAT1/SLC22A12 on gout (2021)
  • Author(s): Yu Toyoda, Yusuke Kawamura, Akiyoshi Nakayama, Hirofumi Nakaoka, Toshihide Higashino, Seiko Shimizu, Hiroshi Ooyama, Keito Morimoto, Naohiro Uchida, Ryuichiro Shigesawa, Kenji Takeuchi, Ituro Inoue, Kimiyoshi Ichida, Hiroshi Suzuki, Nariyoshi Shinomiya, Tappei Takada, Hirotaka Matsuo
  • Organizer: The 19th International Purine and Pyrimidine Symposium
  • Int'l Joint Research
• [Presentation] Robust Platform of Neuronal Subtype-specific Differentiation Using Transcription Factors forning Applications (2021)
  • Author(s): 石川充
  • Organizer: 第94回日本薬理学会年会
  • Invited
• [Presentation] 細胞周期が遺伝子発現不均質性を生み出す可能性の検証 (2021)
  • Author(s): 梶谷卓也
  • Organizer: 日本生化学会北陸支部例会
  • Invited
• [Presentation] 南極に生息している菌類とその産業への利用に向けて (2021)
  • Author(s): 辻雅晴
  • Organizer: バイオインダストリー協会・未来へのバイオ技術勉強会
  • Invited
• [Presentation] 神経幹細胞にニューロン分化能を賦与するエピジェネティック・クロマチン制御機構の解明 (2021)
  • Author(s): 岸雄介
  • Organizer: 第14回日本エピジェネティクス研究会年会
  • Invited
• [Presentation] 微生物ゲノム、正面から見るか、裏から見るか。あるいは、いわゆるタンパク質立体構造予測問題の“解決”に思うこと。 (2021)
  • Author(s): 岩崎渉
  • Organizer: 第15回日本ゲノム微生物学会年会
  • Invited
• [Presentation] 経験が脳を発達させる仕組み-遺伝子発現制御の観点から- (2021)
  • Author(s): 酒井 晶子
  • Organizer: 第1回 : マルチNGSオミクス解析研究会
  • Invited
• [Presentation] がんに起因する宿主の病態生理に関する研究 (2021)
  • Author(s): 河岡慎平
  • Organizer: 第38回日本肥満症治療学会学術集会
  • Invited
• [Presentation] 多様なアブシシン酸受容体の生理機能の解明を目指した人工分子の開発と利用 (2021)
  • Author(s): 岡本昌憲
  • Organizer: 第62回日本植物生理学会年会
  • Invited
• [Presentation] 進化実験により細菌の病原性を理解する (2021)
  • Author(s): 垣内力
  • Organizer: 第94回日本細菌学会総会
  • Invited
• [Presentation] 湖沼調査から新たなるブレークスルーを目指して (2021)
  • Author(s): 野崎久義
  • Organizer: 日本藻類学会第45回大会
  • Invited
• [Presentation] どのプラスミドが, どのようなときに, どこからどこに移るのだろうか (2021)
  • Author(s): 新谷政己
  • Organizer: 日本農芸化学会2021年度大会
  • Invited
• [Presentation] 植物の乾燥ストレス応答を制御する分子開発 (2021)
  • Author(s): 岡本昌憲
  • Organizer: 日本農薬学会第46回大会
  • Invited
• [Presentation] Global view of translation and mRNA levels in the Arabidopsis deadenylase mutants (2021)
  • Author(s): Taku Tokunaka, Toshihiro Arae, Seidai Takamatsu, Atsushi Toyoda, Yukako Chiba
  • Organizer: The 62th Annual Meeting of JSPP
• [Presentation] カキ‘平核無’に生じた小果変異の起源と多面発現 (2021)
  • Author(s): 西山総一郎、王盛、Tam Chun-Lai、田尾龍太郎
  • Organizer: 園芸学会令和3年度春季大会
• [Presentation] ゼニゴケにおけるRNAポリメラーゼⅣ、Ⅴの機能解析 (2021)
  • Author(s): 池田ひかり、都筑正行、渡邊雄一郎
  • Organizer: 第62回日本植物生理学会年会
• [Presentation] クロマツにおけるRNA-Seqデータからの高密度連鎖地図の作製 (2021)
  • Author(s): 平尾知士、平川英樹、松永孝治、三嶋賢太郎、能勢美峰
  • Organizer: 第132回日本森林学会大会
• [Presentation] DUX4の発現は筋細胞で非コード領域からの転写を促進する (2021)
  • Author(s): 三橋弘明
  • Organizer: 第8回骨格筋生物学研究会
• [Presentation] 菌血症における病原菌の患者内多様性の解明に向けた解析パイプラインの構築 (2021)
  • Author(s): 園田 大輝, 後藤 恭宏, 西田 留梨子, 下野 信行, 中村佳司, 林哲也
  • Organizer: 第94回日本細菌学会総会
• [Presentation] 非コードRNAを含有する熱ストレス応答性の新規核内構造体, HiNoCo-bodyの同定 (2021)
  • Author(s): 小野口玲菜、秋光信佳
  • Organizer: 日本薬学会第141年会(広島)
• [Presentation] Genomic identification and characterization of sex-determining locus of Takifugu niphobles by a chromosome scale genome assembly (2021)
  • Author(s): Kabir Ahammad, Risa Ieda, Daigaku Fujikawa, Shotaro Hirase, Takashi Koyama, Atsushi Toyota, Shigehiro Kuraku Sho Hosoya, Kiyoshi KikuchiKabir Ahammad, Risa Ieda, Daigaku Fujikawa, Shotaro Hirase, Takashi Koyama, Atsushi Toyota, Shigehiro Kuraku Sho Hosoya, Kiyoshi Kikuchi
  • Organizer: 令和3年度日本水産学会春季大会
• [Presentation] ミドリイガイ全ゲノム配列の解明と足糸関連遺伝子の探索 (2021)
  • Author(s): 井上広滋、善岡祐輝、田中裕之、金城梓、佐々三依子、植田育男、新里宙也、豊田敦、伊藤武彦
  • Organizer: 令和3年度日本水産学会春季大会
• [Presentation] ホモタリック種ボルボックス進化基盤解明のための比較ゲノム解析 (2021)
  • Author(s): 山本荷葉子、浜地貴志、豊岡博子、松﨑令、西村芳樹、河地 正伸、野崎久義
  • Organizer: 第14回クラミドモナス研究会オンライン
• [Presentation] Paused iPS細胞を用いたKLF4量依存的エピジェネティクス制御機構の解析 (2021)
  • Author(s): 西村健、Arun Kumar、岸本拓実、久武幸司
  • Organizer: 第14回日本エピジェネティクス研究会年会
• [Presentation] RNA polymerase Ⅱによる転写とヒストン修飾の安定性制御 (2021)
  • Author(s): 梶谷卓也
  • Organizer: 第14回日本エピジェネティクス研究会年会
• [Presentation] MeCP2のマイクロRNAプロセッシングを介した神経幹細胞分化制御機構 (2021)
  • Author(s): 中嶋秀行、中島欽一
  • Organizer: 第14回神経発生討論会
• [Presentation] 慢性胃炎および胃がんに関連する長鎖non-coding RNA結合タンパク質の探索 (2021)
  • Author(s): 北嶋洋志、丸山玲緒、山本英一郎、新沼 猛、甲斐正広、仲瀬裕志、時野隆至、鈴木 拓
  • Organizer: 第14回日本エピジェネティクス研究会年会
• [Presentation] ATAC-seq法およびCUT&TAG法を用いたヒト精子エピゲノムプロフィールの解析 (2021)
  • Author(s): 牧野吉倫、中戸隆一郎、有馬隆博、鈴木譲、兼子智、岡田由紀
  • Organizer: 第14回日本エピジェネティクス研究会年会
• [Presentation] コヒーシンローダーNipb1は幼若脳の経験依存的な抑制性ニューロン発達に必要である (2021)
  • Author(s): 酒井 晶子、中戸 隆一郎、Heiko Peters、白髭 克彦、杉山 清佳
  • Organizer: 第14回日本エピジェネティクス研究会年会
• [Presentation] Long-read metagenomics using PromethION uncovers oral bacteriophages and their interaction with host bacteria (2021)
  • Author(s): Koji Yahara, Masato Suzuki, Aki Hirabayashi, Wataru Suda, Masahira Hattori, Yutaka Suzuki, Yusuke Okazaki
  • Organizer: 第15回日本ゲノム微生物学会年会
• [Presentation] 独立栄養性亜硝酸酸化細菌のプロテオームに対する有機物の影響 (2021)
  • Author(s): 石井 拳人、藤谷 拓嗣、Barth F. Smets、常田 聡
  • Organizer: 第15回日本ゲノム微生物学会年会
• [Presentation] 亜硝酸酸化細菌Nitrobacterの新株が持つ固有の窒素代謝経路と亜酸化窒素還元機能の発見 (2021)
  • Author(s): 髙橋 悠、石井 拳人、藤谷 拓嗣、関口 勇地、末永 俊和、寺田 昭彦、廣野 祐平、多胡 香奈子、早津 雅仁、常田 聡
  • Organizer: 第15回日本ゲノム微生物学会年会
• [Presentation] 微生物統合データベース MicrobeDB. jp version 3とマイクロバイオーム解析 (2021)
  • Author(s): 森宙史、藤澤貴智、西出浩世、矢口貴志、高橋弘喜、中川善一、山田拓司、内山郁夫、中村保一、黒川顕
  • Organizer: 第15回日本ゲノム微生物学会年会
• [Presentation] ヒト多能性幹細胞から分化誘導した気道・肺胞オルガノイドの応用 (2021)
  • Author(s): 後藤 慎平
  • Organizer: 第20回日本再生医療学会総会
• [Presentation] 造血器腫瘍制御に寄与する食物栄養依存性代謝物の探索 (2021)
  • Author(s): 陳 茜、田所 優子、司 沙、本田 浩章、平尾 敦
  • Organizer: 第25回造血器腫瘍研究会
• [Presentation] 生後脳の経験依存的な抑制性ニューロン発達におけるコヒーシンローダーの役割 (2021)
  • Author(s): 酒井 晶子、中戸 隆一郎、Heiko Peters、白髭 克彦、杉山 清佳
  • Organizer: 第38回染色体ワークショプ・第19回核ダイナミクス研究会
• [Presentation] 植物の再生能力の獲得に関与するエピジェネティック制御因子の機能解析 (2021)
  • Author(s): 三浦理奈、坂本卓也、澁田未央、大矢恵代、稲垣宗一、鈴木穣、角谷徹二、松永幸大
  • Organizer: 第62回日本植物生理学会年会
• [Presentation] 糸状菌・細菌共生集合体が栄養枯渇環境下での植物生長に果たす役割 (2021)
  • Author(s): 晝間敬
  • Organizer: 第62回日本植物生理学会年会
• [Presentation] シロイヌナズナのリン枯渇応答制御因子による微生物制御 (2021)
  • Author(s): 千種亮、岡田健太郎、平野綾刀、Yuniar Devi Utami、篠崎一雄、菊池沙安、藤田美紀、晝間敬、西條雄介
  • Organizer: 第62回日本植物生理学会年会
• [Presentation] シロイヌナズナのカロースによるリン枯渇環境への適応 (2021)
  • Author(s): 岡田健太郎、谷地洸映、Tan Anh NhiNguyen、李泰洪、菊池沙安、篠崎一雄、菅野里美、藤田美紀、晝間敬、西條雄介
  • Organizer: 第62回日本植物生理学会年会
• [Presentation] シロイヌナズナの葉の発生分化におけるエピジェネティック因子AS2と核小体タンパク質の役割の解明 (2021)
  • Author(s): 町田千代子、高橋広夫、日比野哲紀、安藤沙友里、岩川秀和、野元美佳、多田正臣、杉山宗隆、小島晶子、町田泰則
  • Organizer: 第62回日本植物生理学会年会
• [Presentation] ゼニゴケにおけるMpCLE2ペプチドシグナル下流因子の探索 (2021)
  • Author(s): 高橋 剛、清末 知宏、平川 有宇樹
  • Organizer: 第62回日本植物生理学会年会
• [Presentation] Establishment of tip growth of conchocelis in the red alga Neopyropia yezoensis (2021)
  • Author(s): Yuji Hiwatashi, Mizuho Shimada, Nagisa Takada
  • Organizer: 第62回日本植物生理学会年会
• [Presentation] Marpolbase : development of the genome and expression database for the liverwort Marchantia polymorphaMarpolbase : ゼニゴケのための遺伝子情報および発現量データベースの開発 (2021)
  • Author(s): 谷澤 靖洋, 川村 昇吾, 矢倉 勝, 坂本 美佳, 望月 孝子, 山岡 尚平, 西浜 竜一, 大和 勝幸, 河内 孝之, Liu, Chang, Berger, Frédéric, 中村 保一
  • Organizer: 第62回日本植物生理学会年会
• [Presentation] 成体イモリ筋組織の培養下の振る舞い～血球因子と二つの筋形成細胞～ (2021)
  • Author(s): 志賀翔太、千葉親文
  • Organizer: 第7回イモリ型の臓器再生フォーラム
• [Presentation] Development of in vivo systems for studies on unique tissue patterning during adult newt regeneration (2021)
  • Author(s): Martin Miguel Casco-Robles、千葉親文
  • Organizer: 第7回イモリ型の臓器再生フォーラム
• [Presentation] 黄色ブドウ球菌はAgrのサイレンシングにより院内感染でのパーシステンスとコンピテンシーを獲得する (2021)
  • Author(s): 山崎由里子, 田中麻里, 楠屋陽子, 青山礼華, 大曽根義輝, 高橋弘喜, 中村悠美, 高屋明子
  • Organizer: 第94回日本細菌学会総会
• [Presentation] イネの3Dゲノムに対して異種染色体の添加が与える影響の解析 (2021)
  • Author(s): 真弓 彩夏、保坂 碧、安井 秀、野々村 賢一、松永 幸大、坂本 卓也、武田 紀子、山口 佳穂、辻 寛之
  • Organizer: 日本育種学会第139回講演会
• [Presentation] イオン-遺伝子共発現解析による野生イネのリン欠乏応答 (2021)
  • Author(s): 大森良弘、藤原徹
  • Organizer: 日本育種学会第139回講演会
• [Presentation] ユーストマの全ゲノム解読とDNAマーカー開発(学会のプレスリリース課題に選定されたとのことhttps://www.nacos.com/jsb/06/06press.html) (2021)
  • Author(s): 川勝 恭子、豊田 敦、永野 惇、川勝 泰二、中野 善公、今村 仁、福田 直子、久松 完、山口 博康、望月 孝子、谷澤 靖洋、坂本 美佳、中村 保一
  • Organizer: 日本育種学会第139回講演会
• [Presentation] オオムギ2H染色体に座乗する形質転換感受性に関わる遺伝子座TFA3の特性 (2021)
  • Author(s): 久野 裕、宗森 広美、佐藤 和広
  • Organizer: 日本育種学会第139回講演会
• [Presentation] 2種の野生種トマトの参照ゲノム配列構築 (2021)
  • Author(s): 武井瞳、白澤健太、桑原康介、豊田敦、松澤佑馬、飯岡真司、有泉亨
  • Organizer: 日本育種学会第139回講演会
• [Presentation] ユーストマの全ゲノム解読とDNAマーカー開発 (2021)
  • Author(s): 川勝 恭子, 豊田 敦, 永野 惇, 川勝 泰二, 中野 善公, 今村 仁, 福田 直子, 久松 完, 山口 博康, 望月 孝子, 谷澤 靖洋, 坂本 美佳, 中村 保一
  • Organizer: 日本育種学会第139回講演会
• [Presentation] PTTH細胞が脱皮タイミングを制御する神経機構の解析 (2021)
  • Author(s): 叶田 貴之、伊藤 瑤子、岩見 雅史、木矢 星歌、木矢 剛智
  • Organizer: 日本蚕糸学会第91回大会
• [Presentation] 腐肉に集まる昆虫の種相及び個体数は微生物やウジを排除した場合どう変わるのか? (2021)
  • Author(s): 松島義治、橋詰茜、幸田良介、中島啓裕
  • Organizer: 日本生態学会第68回全国大会
• [Presentation] 動物の死骸は誰のもの? : 死肉食性昆虫と雑食性食肉目の消費型競争 (2021)
  • Author(s): 橋詰茜、松島義治、幸田良介、笠原康裕、大舘智志、中島啓裕
  • Organizer: 日本生態学会第68回全国大会
• [Presentation] クロレラの内部倍数性とAr・Feイオンビーム照射による染色体の分断化と再構築 (2021)
  • Author(s): 石井公太郎、風間裕介、浅野円花、竹下毅、阿部知子、河野重行
  • Organizer: 日本藻類学会第45回大会
• [Presentation] ヒメミカヅキモにおける蛍光標識CenH3タンパク質の発現による染色体可視化 (2021)
  • Author(s): 渡辺実咲、村田隆、堤元佐、大友康平、根本知己、西山智明、土金勇樹、関本弘之
  • Organizer: 日本藻類学会第45回大会
• [Presentation] シリカ被殻を持つ真核藻類 : パルマ藻・珪藻の比較ゲノム解析 (2021)
  • Author(s): 伴 広輝、桑田 晃、中村 洋路、佐藤 晋也、吉川 伸哉、山田 和正、一宮 睦雄、緒方 博之
  • Organizer: 日本藻類学会第45回大会
• [Presentation] 同一不和合性群に属する塩基組成の異なるプラスミドの宿主域比較 (2021)
  • Author(s): 德田真穂、鈴木治夫、雪真弘、大熊盛也、金原和秀、新谷政己
  • Organizer: 日本農芸化学会2021年度大会
• [Presentation] 多摩川流域における薬剤耐性遺伝子の伝播を担うプラスミドの収集と比較 (2021)
  • Author(s): 中道孝一朗、金子健成、森光矢、森内良太、道羅英夫、金原和秀、二又裕之、新谷 政己
  • Organizer: 日本農芸化学会2021年度大会
• [Presentation] 環境中を伝播する新規IncP-1群様プラスミドの取得とその分布 (2021)
  • Author(s): 金子健成、中道孝一朗、森内良太、道羅英夫、金原和秀、新谷政己
  • Organizer: 日本農芸化学会2021年度大会
• [Presentation] 日本各地から取得した自己伝達性IncPromA群プラスミドの特徴の解明 (2021)
  • Author(s): 山本雪絵、金子健成、中道孝一朗、早川雅也、森内良太、道羅英夫、金原和秀、新谷政己
  • Organizer: 日本農芸化学会2021年度大会
• [Presentation] mRNA輸送因子UAP56とURH49による選択的mRNAスプライシング制御機構の解明 (2021)
  • Author(s): 池田宥哉、藤田賢一、吉岡英惠、増田誠司
  • Organizer: 日本農芸化学会2021年度大会
• [Presentation] 核内エキソソームの分解ターゲットとなるpolyA+RNAの解析 (2021)
  • Author(s): 杉元啓悟、藤原奈央子、瀬尾茂人、増田誠司
  • Organizer: 日本農芸化学会2021年度大会
• [Presentation] クエン酸高生産菌Aspergillus tubingensis WU-2223Lのドラフトゲノムの決定 (2021)
  • Author(s): 吉岡育哲, 高橋弘喜, 楠屋陽子, 矢口貴志, 桐村光太郎
  • Organizer: 日本農芸化学会2021年度大会
• [Presentation] 輸入植物球根から分離されたヒト病原真菌における農薬耐性進化の可能性 (2021)
  • Author(s): 萩原大祐, 老木紗予子, 楠屋陽子, 高橋弘喜
  • Organizer: 日本農薬学会第46回大会
• [Presentation] メラノーマに特化したシーケンスパネルの開発 (2021)
  • Author(s): 肥田時征、堀本浩平、加藤潤史、佐藤さゆり、藤岡茉生、井戸川雅史、丹下正一朗、時野隆至、宇原 久
  • Organizer: 日本皮膚科学会北海道地方会
• [Presentation] 菌の植物ホルモン合成クラスターの活性化が植物共生糸状菌Colletotrichum tofieldiaeの寄生化を促す (2021)
  • Author(s): 晝間敬、青木誠志郎、川邑菜々美、内山朱美、岩崎渉、西條雄介
  • Organizer: 令和3年度日本植物病理学会大会
• [Presentation] トラフグ属における初回成熟開始月齢に差をもたらす遺伝機構 (2021)
  • Author(s): 杉田周平、木元亮太、城夕香、金子智美、佐藤茉菜、吉川壮太、細谷将、菊池潔
  • Organizer: 令和3年度日本水産学会春季大会
• [Presentation] 3D chromatin structure dynamics during dendritic cell differentiation and activation (2020)
  • Author(s): Daisuke Kurotaki
  • Organizer: 4th KAIST-KU Workshop and Joint Symposium
  • Int'l Joint Research / Invited
• [Presentation] Liberating the sequencing power to address the real world questions (2020)
  • Author(s): Yutaka Suzuki
  • Organizer: AIBBC 2020 ONLINE CONFERENCE & WORKSHOPS in the COVID-19 ERA
  • Int'l Joint Research / Invited
• [Presentation] Regulatory mechanisms of innate immune responses (2020)
  • Author(s): Takeuchi, O
  • Organizer: FIMSA Immunology course-2020
  • Int'l Joint Research / Invited
• [Presentation] Toward prediction and control of microbial evolution : Analysis of phenotypic constraints in laboratory evolution (2020)
  • Author(s): Chikara Furusawa
  • Organizer: Quantitative evolution, phylogeny and ecology : from models to data and back
  • Int'l Joint Research / Invited
• [Presentation] Characterization of complicated structural variants with local copy-number changes in cancer genomes using PromethION (2020)
  • Author(s): Yutaka Suzuki
  • Organizer: The 19th International Symposium on Pediatric Neuro-Oncology 2020
  • Int'l Joint Research / Invited
• [Presentation] Evolutionary relationship between Japanese and Indonesian dogs (2020)
  • Author(s): Yohey Terai
  • Organizer: Workshop on Whole Genome Sequencing : A Case with Kintamani Dogs
  • Int'l Joint Research / Invited
• [Presentation] Introduction to Microbial Genome Analysis (2020)
  • Author(s): 谷澤靖洋
  • Organizer: 日本-インドネシア遺伝資源バイオインフォマティックスオンライン講習会
  • Int'l Joint Research / Invited
• [Presentation] Genome Analysis of Eukaryotes (2020)
  • Author(s): 坂本美佳
  • Organizer: 日本-インドネシア遺伝資源バイオインフォマティックスオンライン講習会
  • Int'l Joint Research / Invited
• [Presentation] Characteristics of Mosaic Neurofibromatosis type 2 Revealed by Deep Sequence for Multiple Tissue DNA (2020)
  • Author(s): Yu Teranishi, Satoru Miyawaki, Hiroki Hongo, Shogo Dofuku, Atsushi Okano, Shunsaku Takayanagi, Takahiro Ota, Jun Yoshimura, Wei Qu, Jun Mitsui, Hirofumi Nakatomi, Shinichi Morishita, Shoji Tsuji, Nobuhito Saito
  • Organizer: 2020 European NF Meeting
  • Int'l Joint Research
• [Presentation] YMPHOID-MYELOID CELL FATE DETERMINATION BY ENDORIBONUCLEASES REGNASE-1 AND -3 (2020)
  • Author(s): Takuya, U., Yamada, S., Miyazaki, M., Giladi, A., Vandenbon, A., Amit, I., Kawamoto, H., Takeuchi, O.
  • Organizer: 8th Annual Meeting ; International Cytokine & Interferon Society
  • Int'l Joint Research
• [Presentation] The replication factor MCM10 maintains breast cancer stem-like cells that constitutively experience c-Myc-driven replication stres (2020)
  • Author(s): 後藤典子
  • Organizer: AACR Annual Meeting 2020
  • Int'l Joint Research
• [Presentation] Molecular and immunological profiling of non-viral hepatocellular carcinoma through multi-omics approach (2020)
  • Author(s): 村井 大毅、小玉 尚宏、竹原 徹郎
  • Organizer: AASLD2020
  • Int'l Joint Research
• [Presentation] Identification of vitamin K binding protein by magnetic beads labeled derivative to search a novel activity (2020)
  • Author(s): Masaharu Kobayashi, Ayako Furukawa, Maya Kamao, Yoshitomo Suhara, Yoshihisa Hirota
  • Organizer: ACS Fall 2020 Virtual Meeting & Expo
  • Int'l Joint Research
• [Presentation] Runx2 defines the osteoblast chromatin landscape in skeletal development (2020)
  • Author(s): Hironori Hojo, Taku Saito, Shoko Onodera, Toshifumi Azuma, Ung-il Chung, Masahide Seki, Yutaka Suzuki, Andrew P. McMahon, Shinsuke Ohba
  • Organizer: American Society for Bone and Mineral Research
  • Int'l Joint Research
• [Presentation] Multi-omics and genetic analyses on pathophysiology of host organs in cancer-bearing animals (2020)
  • Author(s): Rin Mizuno, Riyo Konishi, Shinpei Kawaoka
  • Organizer: Cancer Cachexia Conference
  • Int'l Joint Research
• [Presentation] Identification of Cell-Free DNA profile in oligometastatic colorectal cancer (2020)
  • Author(s): Masaki Nakamura
  • Organizer: ESTRO 2020
  • Int'l Joint Research
• [Presentation] The splicing mechanism that secures large exons encoding intrinsic disordered regions of transcription factors (2020)
  • Author(s): Toshihiko Kawachi Akio Masuda, Jun-ichi Takeda, Mikako Ito, Tomonari Hamaguchi, Kinji Ohno
  • Organizer: Experimental Biology 2020 Meeting
  • Int'l Joint Research
• [Presentation] Plasmids with different nucleotide composition showed different host ranges (2020)
  • Author(s): Maho Tokuda, Haruo Suzuki, Masahiro Yuki, Moriya Ohkuma, Kazuhide Kimbara, Masaki Shintani
  • Organizer: FEMS online conference on microbiology 2020
  • Int'l Joint Research
• [Presentation] Broad host range IncPromA group plasmids were widely distributed around different (2020)
  • Author(s): Yukie Yamamoto, Kensei Kaneko, Masaya Hayakawa, Ryota Moriuchi, Hideo Dora, Kazuhide Kimbara Masaki Shintani
  • Organizer: FEMS online conference on microbiology 2020
  • Int'l Joint Research
• [Presentation] Development of whole-genome sequencing system to detect induced mutations by lifetime-exposure for several generations to low-dose radiation. (2020)
  • Author(s): Yoichi Gondo
  • Organizer: ICRP International Conference on Recovery after Nuclear Accidents : Radiological Protection Lessons from Fukushima and Beyond.
  • Int'l Joint Research
• [Presentation] IDENTIFICATION OF THE TISSUE-SPECIFIC VITAMIN K BINDING PROTEIN BY USING MAGNETIC BEADS (2020)
  • Author(s): Masaharu Kobayashi, Ayako Furukawa, Maya Kamao, Yoshitomo Suhara, Yoshihisa Hirota
  • Organizer: SEATUC2020
  • Int'l Joint Research
• [Presentation] Enhancer genetics reveals physiological significance of expression rhythm of a single gene (2020)
  • Author(s): Shinpei Kawaoka
  • Organizer: Society for Research on Biological Rhythms
  • Int'l Joint Research
• [Presentation] High Precision Risk Assessment System with Large-Scale Control Experiments in the Mouse. (2020)
  • Author(s): Yoichi Gondo
  • Organizer: The 2020 Annual Meeting of Environmental Mutagenesis and Genomics Society
  • Int'l Joint Research
• [Presentation] Comprehensive detection of RNA targets that bind to chemical compounds using next-generation sequencing and data-driven method (2020)
  • Author(s): H. Fujimoto, Y. Kondoh, T. Kawamura, S. Hase, M. Imoto, H. Osada, Y. Sakakibara
  • Organizer: The 25th Annual Meeting of the RNA Society (RNA2020)
  • Int'l Joint Research
• [Presentation] Transcriptome Analysis on Fruit Size Control in ‘Totsutanenashi’ Persimmon (2020)
  • Author(s): Sheng Wang, Chun Lai Tam, Soichiro Nishiyama, Ryutaro Tao
  • Organizer: The 3rd Asian Horticultural Congress 2020
  • Int'l Joint Research
• [Presentation] Translatome profiling of methionine biosynthesis regulation in plants (2020)
  • Author(s): Naoyuki Sotta, Miku Fujita, Seidai Takamatsu, Hitoshi Onouchi, Yukako Chiba, Toru Fujiwara, Satoshi Naito and Yui Yamashita
  • Organizer: TRANSLATIONAL CONTROL
  • Int'l Joint Research
• [Presentation] Changes in fungal diversity in Ward Hunt Lake, Canadian High Arctic (2020)
  • Author(s): Tsuji M, Tanabe Y, WF Vincent, Uchida M
  • Organizer: 第11回極域科学シンポジウム
  • Int'l Joint Research
• [Presentation] Single-cell analyses unravel unique features of plasma cell clones in POEMS syndrome (2020)
  • Author(s): Yusuke Isshiki, Naoya Mimura, Motohiko Oshima, Kensuke Kayamori, Masahide Seki, Yurie Nagai, Shokichi Tsukamoto, Yusuke Takeda, Chikako Ohwada, Sonoko Misawa, Junichiro Ikeda, Satoshi Kuwabara, Yutaka Suzuki, Emiko Sakaida, Chiaki Nakaseko, Atsushi Iwama
  • Organizer: 米国血液学会
  • Int'l Joint Research
• [Presentation] Toward high-throughput antibody-antigen modeling (2020)
  • Author(s): Daron Standley
  • Organizer: (The Basis for Computational Life Science 7)
  • Invited
• [Presentation] データ駆動からキュリオシティ駆動生物学へ (2020)
  • Author(s): 岩崎渉
  • Organizer: 2020年度日本数理生物学会年会
  • Invited
• [Presentation] データサイエンティスト養成セッション : 実践的次世代シークエ ンス解析 : 微生物ゲノム解析 (2020)
  • Author(s): 谷澤靖洋
  • Organizer: 2020年日本バイオインフォマティクス学会年会・第9回生命医薬情報学連合大会(IIBMP2020)
  • Invited
• [Presentation] データサイエンティスト養成セッション : 実践的次世代シークエ ンス解析 : 微生物データ解析 : 真核生物ゲノム解析 (2020)
  • Author(s): 坂本美佳
  • Organizer: 2020年日本バイオインフォマティクス学会年会・第9回生命医薬情報学連合大会(IIBMP2020)
  • Invited
• [Presentation] Dynamic transcriptional regulation of neural stem cells by bHLH factors (2020)
  • Author(s): 山田 真弓
  • Organizer: 第63回日本神経化学会大会
  • Invited
• [Presentation] 古い記憶想起における海馬歯状回記憶痕跡細胞の関与 (2020)
  • Author(s): 奥野浩行
  • Organizer: 第63回日本神経化学会大会
  • Invited
• [Presentation] レット症候群原因因子MeCP2のmiR-199aを介した神経幹細胞分化制御 (2020)
  • Author(s): 中嶋秀行、中島欽一
  • Organizer: NPBPPP2020合同年会
  • Invited
• [Presentation] Unique genome evolution of the Y-absent mammal in genus Tokudaia. (2020)
  • Author(s): Asato Kuroiwa
  • Organizer: The 43rd Annual Meeting of the Molecular Biology Society of Japan
  • Invited
• [Presentation] Towards the elucidation of the horn formation mechanism in the Japanese rhinoceros beetle using NGS analyses. (2020)
  • Author(s): Niimi, T. and Morita, S.
  • Organizer: The 43rd Annual Meeting of the Molecular Biology Society of Japan
  • Invited
• [Presentation] Body color changes and environmental adaptation in dragonflies. (2020)
  • Author(s): Futahashi Ryo
  • Organizer: The 43rd Annual Meeting of the Molecular Biology Society of Japan
  • Invited
• [Presentation] RNA binding proteins and 1ncRNAs in mitotic apparatus formation (2020)
  • Author(s): Daiju Kitagawa
  • Organizer: The 43rd Annual Meeting of the Molecular Biology Society of Japan (2020 Web)
  • Invited
• [Presentation] The nutritional basis of symbiotic yeasts and bacteria for animal growth (2020)
  • Author(s): Yukako Hattori
  • Organizer: The 43rd Annual Meeting of the Molecular Biology Society of Japan (MBSJ2020 Online)
  • Invited
• [Presentation] Determination of the centriole duplication site through phase separation of critical factors (2020)
  • Author(s): Daiju Kitagawa
  • Organizer: The 93rd Annual Meeting of the Japanese Biochemical Society (2020 Web)
  • Invited
• [Presentation] つながる根 : 寄生植物と宿主植物のフシギな関係 (2020)
  • Author(s): 吉田聡子
  • Organizer: 日本植物学会第84回大会
  • Invited
• [Presentation] がんの血管形成を制御するエピゲノムの特性 (2020)
  • Author(s): 田中美和
  • Organizer: がん予防学術大会
  • Invited
• [Presentation] 着床直前期におけるマウス胚位置取りの解析 (2020)
  • Author(s): 杉山真言
  • Organizer: 第163回日本獣医学会学術集会
  • Invited
• [Presentation] シングルセル解析技術の進展 (2020)
  • Author(s): 鈴木穣
  • Organizer: 第19回日本再生医療学会総会
  • Invited
• [Presentation] がんのシングルセルおよび空間トランスクリプトーム解析 (2020)
  • Author(s): 鈴木穣
  • Organizer: 第79回日本癌学会学術総会
  • Invited
• [Presentation] Introduction to Single Cell Analysis (2020)
  • Author(s): Yutaka Suzuki
  • Organizer: 第84回日本循環器学会学術総会
  • Invited
• [Presentation] 低線量生涯被ばくマウス解析の計画と進捗および検討事項 (2020)
  • Author(s): 権藤洋一
  • Organizer: 放射線の利用と生体影響第195委員会第1分科会第1回研究会
  • Invited
• [Presentation] 20世紀から見えていた変異いま見える変異いまだ見えない変異 (2020)
  • Author(s): 権藤洋一
  • Organizer: 日本遺伝学会第92回大会ワークショップ
  • Invited
• [Presentation] 低線量放射線生涯被ばくの次世代への影響 (2020)
  • Author(s): 権藤洋一
  • Organizer: 放射線の利用と生体影響第195委員会会議
  • Invited
• [Presentation] 北極と南極に生育している菌類の産業利用を目指して (2020)
  • Author(s): 辻雅晴
  • Organizer: 極限環境生物学会第21回年会・シンポジウム
  • Invited
• [Presentation] モデル寄生植物の解析からみる植物間相互作用 (2020)
  • Author(s): 吉田聡子
  • Organizer: 植物科学シンポジウム2020
  • Invited
• [Presentation] マイクロフォーカスX線CT法によるカブトムシの角形態の観察と計測. (2020)
  • Author(s): 森田慎一、加藤輝、前野哲輝、新美輝幸
  • Organizer: 第14回 NIBB Bioimaging Forum「非光学的モダリティによる生物イメージングの新展開」
  • Invited
• [Presentation] マイクロフォーカスX線CT法によるカブトムシの角形態の観察と計測 (2020)
  • Author(s): 森田慎一、加藤輝、前野哲輝、新美輝幸
  • Organizer: 第14回 NIBB Bioimaging Forum 「非光学的モダリティによる生物イメージングの新展開」
  • Invited
• [Presentation] イモリ型の皮膚再生 : 皮膚の線維性瘢痕は再生に転ずるか? Newtic skin regeneration : Does fibrotic scarring in the skin transit to regeneration? (2020)
  • Author(s): 千葉親文
  • Organizer: 第19回日本再生医療学会総会
  • Invited
• [Presentation] がん幹細胞を標的とした治療戦略 (2020)
  • Author(s): 後藤典子
  • Organizer: 第24回日本がん分子標的治療学会学術集会
  • Invited
• [Presentation] 自然免疫NF-кB活性化を調節する新規cGMP経路 (2020)
  • Author(s): 倉田祥一朗
  • Organizer: 第31回日本生体防御学会学術総会 シンポジウム
  • Invited
• [Presentation] ビッグデータが出た後にどうするか : 「解釈」のための二次元オーミクス解析 (2020)
  • Author(s): 岩崎渉
  • Organizer: 第3回環境DNA学会・第36回個体群生態学会合同大会
  • Invited
• [Presentation] ゲノム高次構造制御の破綻による中枢神経回路形成障害 (2020)
  • Author(s): 藤田幸、山下俊英
  • Organizer: 第43回日本神経科学大会
  • Invited
• [Presentation] The mechanism of mating type determination in heterothallic strains of Closterium peracerosum-strigosum-littorale complex, a new model organism to study sexual reproduction in streptophytes (2020)
  • Author(s): Hiroyuki Sekimoto, Natsumi Tsuyuki, Ayumi Komiya, Tomoaki Nishiyama
  • Organizer: 第43回日本分子生物学会年会
  • Invited
• [Presentation] Cell-cell interaction between parasitic plants and host plants (2020)
  • Author(s): 吉田聡子
  • Organizer: 第43回日本分子生物学会年会
  • Invited
• [Presentation] Understanding of molecular mechanisms underlying on morphological diversity of goldfish (Carassius auratus) strains (2020)
  • Author(s): 今鉄男、大森義裕
  • Organizer: 第43回日本分子生物学会年会
  • Invited
• [Presentation] Epigenetic approach to Alzheimer's disease (2020)
  • Author(s): 間野 達雄、岩田 淳
  • Organizer: 第43回日本分子生物学会年会
  • Invited
• [Presentation] Immune regulation by translation-dependent mRNA decay (2020)
  • Author(s): Takeuchi, O
  • Organizer: 第43回日本分子生物学会年会
  • Invited
• [Presentation] レット症候群原因因子MeCP2のmiR-199aを介した神経幹細胞分化制御 (2020)
  • Author(s): 中嶋秀行、辻村啓太、中島欽一
  • Organizer: 第43回日本分子生物学会年会
  • Invited
• [Presentation] レット症候群原因因子MeCP2のマイクロRNAを介した神経幹細胞分化制御機構の解明 (2020)
  • Author(s): 中島欽一
  • Organizer: 第47回日本毒性学会学術年会
  • Invited
• [Presentation] イモリを真似る : 人のbody-parts完全再生に向けた研究戦略 (2020)
  • Author(s): 千葉親文
  • Organizer: 第50回日本創傷治癒学会 教育講演
  • Invited
• [Presentation] 骨格筋の重力/無重力応答に関する研究 (2020)
  • Author(s): 佐藤文規、瀬原淳子
  • Organizer: 第59回日本生体医工学会大会 シンポジウム「宇宙に生き、地上で活かす」(オンライン)
  • Invited
• [Presentation] 脳の発達を支える新たなメカニズム-MeCP2によるヘテロクロマチン制御- (2020)
  • Author(s): 石田 綾
  • Organizer: 第71回日本薬理学会北部会、次世代薬理学セミナー
  • Invited
• [Presentation] 相分離による中心小体複製起点の決定 (2020)
  • Author(s): 北川大樹
  • Organizer: 第72回日本細胞生物学会大会 (2020 Web)
  • Invited
• [Presentation] Modeling sarcoma to clarify enhancer reprogramming in disease progression (2020)
  • Author(s): 田中美和
  • Organizer: 第79回日本癌学会学術総会
  • Invited
• [Presentation] miRNA Methylation (2020)
  • Author(s): Ishii, H.
  • Organizer: 第79回日本癌学会学術総会
  • Invited
• [Presentation] Identification of subpopulations in patients-derived breast cancer stem-like cells by using RNA sequencing (2020)
  • Author(s): 西村建徳
  • Organizer: 第79回日本癌学会学術総会
  • Invited
• [Presentation] テントウムシの斑紋とカブトムシの角について. (2020)
  • Author(s): 新美輝幸
  • Organizer: 第7回コオロギ・オンライン研究会
  • Invited
• [Presentation] エンハンサー遺伝学とマルチオミクス解析による生命現象の理解 (2020)
  • Author(s): 河岡慎平
  • Organizer: 第93回日本生化学会大会
  • Invited
• [Presentation] ヒト精子におけるエピゲノムプロフィールの検討 (2020)
  • Author(s): 岡田由紀、牧野吉倫
  • Organizer: 第93回日本生化学会大会
  • Invited
• [Presentation] MRSAの病原性制御機構 (2020)
  • Author(s): 垣内力
  • Organizer: 第94回日本感染症学会総会
  • Invited
• [Presentation] 微生物進化の予測と制御へ向けて (2020)
  • Author(s): 古澤 力
  • Organizer: 第94回日本細菌学会総会
  • Invited
• [Presentation] セントロメアのエピジエネティックスと進化 (2020)
  • Author(s): 堀哲也
  • Organizer: 日本遺伝学会第92回大会
  • Invited
• [Presentation] Y染色体とSRY遺伝子をもたない哺乳類種の性決定メカニズム (2020)
  • Author(s): 黒岩麻里
  • Organizer: 日本遺伝学会第92回大会
  • Invited
• [Presentation] 宿主由来シグナルによって制御される寄生植物の器官発生 (2020)
  • Author(s): 吉田聡子
  • Organizer: 日本植物学会第84回大会
  • Invited
• [Presentation] 相分離により形成される核小体とAS2ボディの葉形成における役割 (2020)
  • Author(s): 町田千代子、鈴木崇紀、町田泰則
  • Organizer: 日本植物学会第84回大会
  • Invited
• [Presentation] 表現型揺らぎと進化可能性 : 微生物進化実験によるアプローチ (2020)
  • Author(s): 古澤 力
  • Organizer: 日本植物学会第84回大会
  • Invited
• [Presentation] 進化過程の予測と制御へ向けて : 大規模大腸菌進化実験の表現型・遺伝子型解析 (2020)
  • Author(s): 古澤 力
  • Organizer: 日本進化学会第22回オンライン大会
  • Invited
• [Presentation] 様々な微生物間におけるプラスミドの伝播現象に影響を及ぼす因子の探索 (2020)
  • Author(s): 新谷政己
  • Organizer: 日本進化学会第22回オンライン大会
  • Invited
• [Presentation] 創傷がトリガーする器官再生に固有な現象とその機構 (2020)
  • Author(s): 深澤 太郎
  • Organizer: 日本動物学会第91回大会シンポジウム テクノロジーが切り開く「シン・再生研究」
  • Invited
• [Presentation] クロマチンダイナミクスの解析から再生特異的なエンハンサーの活性化メカニズムに迫る (2020)
  • Author(s): 鈴木菜花、荻野肇、越智陽城
  • Organizer: 日本動物学会第91回大会シンポジウム テクノロジーが切り開く「シン・再生研究」
  • Invited
• [Presentation] RNA代謝による自然免疫応答の惹起と制御 (2020)
  • Author(s): 竹内理
  • Organizer: 日本臨床免疫学会総会
  • Invited
• [Presentation] Discovery of mRNA secondary structural features for the accurate prediction of protein abundance in Escherichia coli (2020)
  • Author(s): Goro Terai, Kiyoshi Asai
  • Organizer: 2020年日本バイオインフォマティクス学会年会・第9回生命医薬情報学連合大会(IIBMP2020)
• [Presentation] PBSIM2 : simulator for long read sequencers with a novel generative model of quality scores (2020)
  • Author(s): Yukiteru Ono, Kiyoshi Asai, Michiaki Hamada
  • Organizer: 2020年日本バイオインフォマティクス学会年会・第9回生命医薬情報学連合大会(IIBMP2020)
• [Presentation] Simultaneous measurement of RNA synthesis and degradation rates using modified ribonucleosides (2020)
  • Author(s): Kentaro Kawata
  • Organizer: 2nd RNAJ Online Meeting
• [Presentation] Medusavirus transcriptome & the genome characterization of a new medusavirus strain (2020)
  • Author(s): Zhang R., Yoshida K., Garcia K., Endo H., Takemura M., Ogata H.
  • Organizer: JSME Environmental Virus Meeting 2020
• [Presentation] Shuffling Giants : Genome recombination between giant viruses isolated in Japan (2020)
  • Author(s): Garcia K., Yoshida K., Aoki K., Endo H., Takemura M., Ogata H.
  • Organizer: The 43rd Annual Meeting of the Molecular Biology Society of Japan
• [Presentation] Metagenome informatics for microbiome researches (2020)
  • Author(s): Mori H.
  • Organizer: The 43rd Annual Meeting of the Molecular Biology Society of Japan
• [Presentation] Development of a system for simultaneous measurement of RNA synthesis and degradation rates using modified nucleic acids (2020)
  • Author(s): Kentaro Kawata
  • Organizer: The 43rd Annual Meeting of the Molecular Biology Society of Japan
• [Presentation] The nutritional basis of Drosophila associated yeasts and bacteria for larval growth (2020)
  • Author(s): Ayumi Mure
  • Organizer: The 43rd Annual Meeting of the Molecular Biology Society of Japan (MBSJ2020 Online)
• [Presentation] 網羅的遺伝子解析によって明らかになった神経線維腫症2型(NF2)の多様な臨床的・遺伝的背景 (2020)
  • Author(s): 寺西裕、宮脇哲、小原健太、本郷博貴、堂福翔吾、高柳俊作、中冨浩文、齊藤延人
  • Organizer: 遺伝性腫瘍学会学術集会
• [Presentation] 空間的/シングルセル遺伝子発現情報統合解析が示す心臓内神経堤細胞の多様性と領域性 (2020)
  • Author(s): Akiyasu Iwase, Yasunobu Uchijima, Daiki Seya, Mayuko Kida, Hiroki Higashiyama, Kazuhiro Matsui, Akashi Taguchi, Shogo Yamamoto, Shiro Fukuda, Seitaro Nomura, Takahide Kohro, Chisa Shukunami, Masahide Seki, Yutaka Suzuki, Youichiro Wada, Hiroyuki Aburatani, Yukiko Kurihara, Sachiko Miyagawa-Tomita, Hiroki Kurihara
  • Organizer: 第19回日本心臓血管発生研究会
• [Presentation] Regionality of intracardiac neural crest cells with diversity and differentiation fate mechanism revealed by single cell and spatial transcriptome analysis (2020)
  • Author(s): Akiyasu Iwase, Yasunobu Uchijima, Daiki Seya, Mayuko Kida, Hiroki Higashiyama, Kazuhiro Matsui, Akashi Taguchi, Shogo Yamamoto, Shiro Fukuda, Seitaro Nomura, Takahide Kohro, Chisa Shukunami, Masahide Seki, Yutaka Suzuki, Youichiro Wada, Hiroyuki Aburatani, Yukiko Kurihara, Sachiko Miyagawa-Tomita, Hiroki Kurihara
  • Organizer: 第43回日本分子生物学会年会
• [Presentation] がんゲノム情報を用いた食道癌治療の最適化 (2020)
  • Author(s): 岩谷 岳、遠藤 史隆、八重樫 瑞典、佐々木 教之、藤澤 良介、二階 春香、馬場 誠朗、秋山 有史、佐々木 章、西塚 哲
  • Organizer: 第120回日本外科学会定期学術集会
• [Presentation] オオムギ2H染色体に座乗する形質転換効率に関わるTFA3遺伝子座の機能 (2020)
  • Author(s): 久野 裕、宗森 広美、佐藤 和広
  • Organizer: 第15回ムギ類研究会
• [Presentation] 複数組織DNAに対するtarget deep sequenceによって明らかになった神経線維腫症2型(NF2)の多様な臨床的・遺伝的背景 (2020)
  • Author(s): 寺西裕、宮脇哲、石神大一郎、小原健太、本郷博貴、堂福翔吾、高柳俊作、中冨浩文、齊藤延人
  • Organizer: 第29回日本聴神経腫瘍研究会
• [Presentation] MeCP2 Levels Regulate Heterochromatin Structure in vivo (2020)
  • Author(s): Aya Ito-Ishida
  • Organizer: 第43回日本神経科学大会
• [Presentation] 粒子曝露による多動性障害ラット線条体のDNAメチル化プロファイル (2020)
  • Author(s): 石堂正美
  • Organizer: 第43回日本神経科学大会
• [Presentation] 哺乳類ゲノムに内在化するウイルスに由来する配列 (2020)
  • Author(s): 中川草
  • Organizer: 第43回日本分子生物学会年会
• [Presentation] シングルセル解析で見えてきたiPS細胞由来Ⅰ型肺胞上皮細胞 (2020)
  • Author(s): 後藤 慎平
  • Organizer: 第60回日本呼吸器学会学術講演会
• [Presentation] 原発巣変異およびctDNA治療後早期変動による食道癌化学療法効果予測 (2020)
  • Author(s): 岩谷 岳、遠藤 史隆、藤澤 良介、佐々木 教之、二階 春香、馬場 誠朗、秋山 有史、佐々木 章、西塚 哲
  • Organizer: 第74回日本食道学会学術集会
• [Presentation] Development of high-precision comprehensive detection of de novo mutations in the mouse. (2020)
  • Author(s): Yoichi Gondo
  • Organizer: 第43回日本分子生物学会年会(MBSJ2020)
• [Presentation] 九倍体カキ’平核無’とその枝変わり群の系統分化 (2020)
  • Author(s): 西山総一郎、王 盛、田尾龍太郎
  • Organizer: 日本育種学会第138回講演会
• [Presentation] 全ゲノムデータからみたヒメミカヅキモの自殖系統におけるホメオログ間組み換え (2020)
  • Author(s): 川口也和子、土金勇樹、田中啓介、太治輝昭、豊田敦、西山智明、関本弘之、土松隆志
  • Organizer: 日本植物学会第84回大会
• [Presentation] ゲノム量から明らかにするヒメミカヅキモの多様性 (2020)
  • Author(s): 土金勇樹、川口也和子、上原浩一、土松隆志
  • Organizer: 日本植物学会第84回大会
• [Presentation] Analysis of gap regions in 22q11 by using long read sequencing technology (2020)
  • Author(s): Hidehito Inagaki, Takema Kato, Atsushi Toyoda, Yoshio Makita, Hiroki Kurahashi
  • Organizer: 日本人類遺伝学会第65回大会
• [Presentation] 頭蓋内動脈狭窄におけるRNF213変異の解析 (2020)
  • Author(s): 本郷博貴、宮脇哲、今井英明、清水暢裕、寺西裕、堂福翔吾、小原健太、石神大一郎、小野秀明、中冨浩文、斉藤延人
  • Organizer: 日本人類遺伝学会第65回大会
• [Presentation] RNA polymerase IIリン酸化による転写一時停止はエピジェネティクス情報不均一さを抑制する (2020)
  • Author(s): 梶谷卓也
  • Organizer: 日本生化学会北陸支部例会
• [Presentation] 神経線維腫症2型(NF2)の遺伝子解析によって明らかになった多様な臨床的・遺伝的背景 (2020)
  • Author(s): 寺西裕、宮脇哲、石神大一郎、小原健太、本郷博貴、堂福翔吾、高柳俊作、中冨浩文、齊藤延人
  • Organizer: 日本脳神経外科学会総会
• [Presentation] 分裂酵母新規RNA結合タンパク質の紡錘体形成における機能解析 (2020)
  • Author(s): 湯川格史
  • Organizer: 酵母遺伝学フォーラム第53回研究報告会
• [Presentation] 非B非C肝細胞癌の背景肝疾患別臨床的及び分子生物学的特徴の検討 (2020)
  • Author(s): 村井 大毅、小玉 尚宏、竹原 徹郎
  • Organizer: 第106回日本消化器病学会総会
• [Presentation] マウス胎子期精巣における新規性転換系の樹立とその卵巣化メカニズムの解析 (2020)
  • Author(s): 今井松健也、板橋寛嗣、冨田絢子、平松竜司、金井克晃
  • Organizer: 第113回日本繁殖生物学会大会
• [Presentation] ダイズにおける*ddml*変異体の遺伝分析 (2020)
  • Author(s): 白石 佳那、高橋 一輝、丸小 知歩、黒田 隆太、加賀 秋人、岡崎 桂一、深井 英吾
  • Organizer: 第15回東北育種研究集会
• [Presentation] マウス胎子期精巣の性転換系における卵巣化メカニズムの解析 (2020)
  • Author(s): 今井松健也、板橋寛嗣、冨田絢子、平松竜司、金井克晃
  • Organizer: 第163回日本獣医学会学術集会
• [Presentation] ショウジョウバエ成虫原基を用いた器官運命転換の瞬間における遺伝子発現制御の網羅的解析 (2020)
  • Author(s): 横井智大、根本和也、増子恵太、布施直之、倉田祥一朗
  • Organizer: 第19回次世代を担う若手ファーマ・バイオフォーラム2020
• [Presentation] ミヤコグサのベツリン酸生合成を制御するbHLH型転写因子の同定 (2020)
  • Author(s): 鈴木隼人、髙橋宏和、福島エリオデット、關 光、中園幹生、村中俊哉
  • Organizer: 第30回イソプレノイド研究会
• [Presentation] クロテンフユシャクの季節性関連遺伝子 : ゲノムワイド関連解析によるアプローチ (2020)
  • Author(s): 山本哲史、工藤誠也、佐藤臨、池田紘士、藤澤知親、野村翔太、曽田貞滋
  • Organizer: 第3回環境DNA学会・第36回個体群生態学会合同大会
• [Presentation] 皮質下投射ニューロンへの分化リプログラミング時における転写制御機構 (2020)
  • Author(s): 大石康二、仲嶋一範
  • Organizer: 第43回日本神経科学大会
• [Presentation] 大脳新皮質第4層ニューロンのサブタイプ特異的分化に寄与する細胞外シグナルの解析 (2020)
  • Author(s): 長谷川紘之、大石康二、山本亘彦、仲嶋一範
  • Organizer: 第43回日本神経科学大会
• [Presentation] Role of cohesin loader in experience-dependent development of interneuron in juvenile brain (2020)
  • Author(s): Sakai, A., Nakato, R., Peters. H., Shirahige, K., Sugiyama, S.
  • Organizer: 第43回日本神経科学大会
• [Presentation] 慢性胃炎および胃がんに関連する長鎖non-coding RNAの同定 (2020)
  • Author(s): 北嶋洋志、丸山玲緒、高澤 啓、新沼 猛、山本英一郎、甲斐正広、時野隆至、小山内誠、仲瀬裕志、鈴木 拓
  • Organizer: 第43回日本分子生物学会年会
• [Presentation] 長いエクソンは天然変性領域をコードしており、SRSF3により安定的にスプライスされる (2020)
  • Author(s): 増田章男、河地利彦、大野欽司
  • Organizer: 第43回日本分子生物学会年会
• [Presentation] Discovery of novel RNA clouds in ER-positive breast cancer cells (2020)
  • Author(s): 市川 雄一、斉藤 典子
  • Organizer: 第43回日本分子生物学会年会
• [Presentation] 東アフリカ産シクリッドの唇肥大化に関わる平行進化の遺伝的機構 (2020)
  • Author(s): 二階堂雅人
  • Organizer: 第43回日本分子生物学会年会
• [Presentation] Evolutional diversity of CENP-A essential motif and its binding mode to HJURP (2020)
  • Author(s): Tetsuya Hori, Jinghui Cao, Yasuhiro Arimura, Kohei Nishimura, Mariko Ariyoshi, Atsushi Toyoda, Sadahiko Misu, Kazuho Ikeo, Hitoshi Kurumizaka, Tatsuo Fukagawa
  • Organizer: 第43回日本分子生物学会年会
• [Presentation] Biochemical analysis of interaction between CENP-A/H4 and HJURP (2020)
  • Author(s): Jinghui Cao, Yasuhiro Arimura, Mariko Ariyoshi, Hitoshi Kurumizaka, Tetsuya Hori, Tatsuo Fukagawa
  • Organizer: 第43回日本分子生物学会年会
• [Presentation] Bulk poly(A)+RNA輸送受容体NXF1補因子NXT遺伝子の哺乳類における多様化とその分子機能 (2020)
  • Author(s): 吉岡英恵、猪瀬春子、藤田賢一、増田誠司
  • Organizer: 第43回日本分子生物学会年会
• [Presentation] Genome-based study of innate immune memory in Drosophila (2020)
  • Author(s): Chang Tang, Chisaki Okamori, Kikuko Hirai, Shoichiro Kurata, Naoyuki Fuse
  • Organizer: 第43回日本分子生物学会年会
• [Presentation] Transcriptome analysis at the initial state of transdetermination in Drosophila imaginal discs (2020)
  • Author(s): 横井 智大、布施 直之、根本 和也、増子 恵太、倉田 祥一朗
  • Organizer: 第43回日本分子生物学会年会
• [Presentation] Sperm epigenomics for quantitative analyses of their heterogeneity (2020)
  • Author(s): 岡田由紀、牧野吉倫
  • Organizer: 第43回日本分子生物学会年会
• [Presentation] Autocrine LIF signaling promotes the progression of human esophageal squamous cell carcinoma (2020)
  • Author(s): 谷口 浩二、川副 徹郎
  • Organizer: 第43回日本分子生物学会年会
• [Presentation] シロイヌナズナの葉の向背軸分化におけるエピジェネティック因子AS2 と核小体タンパク質の役割 (2020)
  • Author(s): 町田千代子、岩川秀和、高橋広夫、安藤沙友里、日比野哲紀、坂本卓也、坂本勇貴、松永幸大、野元美佳、多田正臣、小島晶子、町田泰則
  • Organizer: 第43回日本分子生物学会年会
• [Presentation] CDK9阻害剤のスプライシング調節メカニズムの解析 (2020)
  • Author(s): 米田 宏
  • Organizer: 第43回日本分子生物学会年会
• [Presentation] 幼若脳の経験依存的な抑制性介在ニューロン発達におけるコヒーシンローダーの役割 (2020)
  • Author(s): 酒井 晶子、中戸 隆一郎、Heiko Peters、白髭 克彦、杉山 清佳
  • Organizer: 第43回日本分子生物学会年会
• [Presentation] 大腸菌のタンパク質発現量予測のためのRNA2次構造特徴の抽出 (2020)
  • Author(s): 寺井悟朗、浅井潔
  • Organizer: 第43回日本分子生物学会年会
• [Presentation] Molecular characterization of aging choroid plexus that regulates neural stem cell's behavior and brain functions (2020)
  • Author(s): 堅田明子
  • Organizer: 第43回日本分子生物学会年会
• [Presentation] もやもや病関連RNF213バリアントの網羅的解析 (2020)
  • Author(s): 本郷博貴、宮脇哲、今井英明、清水暢裕、寺西裕、堂福翔吾、小原健太、小野秀明、中冨浩文、斉藤延人
  • Organizer: 第45回日本脳卒中学会学術集会
• [Presentation] 非B非C肝細胞癌の臨床的及び分子生物学的特徴と予後に関する検討 (2020)
  • Author(s): 村井 大毅、小玉 尚宏、竹原 徹郎
  • Organizer: 第56回日本肝癌研究会
• [Presentation] Aspergillus fumigatusのアゾール耐性に関わる新規因子について (2020)
  • Author(s): 新居鉄平, 高橋弘喜, 楠屋陽子, 渡辺哲, 亀井克彦
  • Organizer: 第64回日本医真菌学会総会
• [Presentation] Transient activation of super-enhancers and transcription of cellular genes induced by HTLV-1 Tax (2020)
  • Author(s): 栗田大輔、安永純一朗、田中梓、松岡雅雄
  • Organizer: 第79回日本癌学会学術集会
• [Presentation] DDX41の機能抑制は翻訳変化とDNAダメージを誘導する (2020)
  • Author(s): 神力 悟、トンガラグ・サロール、平山 真弓、金井 昭教、長町 安希子、稲葉 俊哉、松井 啓隆
  • Organizer: 第79回日本癌学会学術総会
• [Presentation] 慢性胃炎および胃がんに関連する長鎖non-coding RNAの同定 (2020)
  • Author(s): 北嶋洋志、丸山玲緒、高澤 啓、新沼 猛、山本英一郎、甲斐正広、時野隆至、小山内誠、仲瀬裕志、鈴木 拓
  • Organizer: 第79回日本癌学会学術総会
• [Presentation] The SFK-YAP axis can be a new potential therapeutic target in colorectal cancer (2020)
  • Author(s): 谷口 浩二
  • Organizer: 第79回日本癌学会学術総会
• [Presentation] Development of novel treatment for esophageal squamous cell carcinoma targeting inflammatory transduction pathway (2020)
  • Author(s): 川副 徹郎、沖 英次、森 正樹、谷口 浩二
  • Organizer: 第79回日本癌学会学術総会
• [Presentation] Single cell analysis revealed heterogeneity among patient-derived breast cancer stem-like cells (2020)
  • Author(s): Mengjiao Li
  • Organizer: 第79回日本癌学会学術総会
• [Presentation] Translational regulation of a subset of genes by DDX41 (2020)
  • Author(s): Tungalag Saruul, Satoru Shinriki, Miyu Tanaka, Mayumi Hirayama, Akiko Nagamachi, Akinori Kanai, Toshiya Inaba, Hirotaka Matsui
  • Organizer: 第82回日本血液学会学術集会
• [Presentation] RUNX/CBF β-driven Irf8 enhancer decides the lineage choice between monocytes and dendritic cells. (2020)
  • Author(s): Koichi Murakami, Haruka Sasaki, Akira Nishiyama, Wataru Kawase, Daisuke Kurotaki, Jun Nakabayashi, Yoichi Sekita, Hideaki Nakajima, Keiko Ozato, Toru Kimura, Tomohiko Tamura
  • Organizer: 第82回日本血液学会学術集会
• [Presentation] 樹状細胞分化におけるクロマチン高次構造動態解析 (2020)
  • Author(s): 黒滝大翼、Pedro P. Rocha、Kairong Cui、中林潤、佐伯恵太、Keji Zhao、Keiko Ozato、田村智彦
  • Organizer: 第82回日本血液学会学術集会
• [Presentation] Intestinal microbiota in heart failure (2020)
  • Author(s): Tomoya Yamashita, Tokiko Tabata, Takuo Emoto, Tomohiro Hayashi, Hikaru Watanabe, Tomoya Takahashi, Naofumi Yoshida, Yoshihiro Saito, Takuji Yamada, Ken-ichi Hirata
  • Organizer: 第84回日本循環器学会学術集会
• [Presentation] Gut microbiota and their related metabolites in heart failure as novel therapeutic targets (2020)
  • Author(s): Tokiko Tabata, Tomoya Yamashita, Ken-ichi Hirata
  • Organizer: 第84回日本循環器学会学術集会
• [Presentation] 発熱植物ザゼンソウにおけるSBP1遺伝子の発現に関する研究 (2020)
  • Author(s): 谷本 悠、梅川 結、伊藤 菊一
  • Organizer: 第93回日本生化学会大会
• [Presentation] 神経線維腫症2型(NF2)の遺伝子解析によって明らかになった多様な臨床的・遺伝的背景 (2020)
  • Author(s): 寺西裕、宮脇哲、石神大一郎、小原健太、本郷博貴、堂福翔吾、高柳俊作、中冨浩文、齊藤延人
  • Organizer: 日本脳腫瘍の外科学会
• [Presentation] 全ゲノム解析によるヴィクトリア湖産シクリッドにおける種特有の適応パターンの解明 (2020)
  • Author(s): 中村遥奈、相原光人、豊田敦、伊藤武彦、二階堂雅人
  • Organizer: 日本遺伝学会第92回大会
• [Presentation] De novo生殖系列変異の特徴と後世代影響 (2020)
  • Author(s): 内村有邦、佐藤康成、樋口真弓、水口洋平、豊田敦、八木健
  • Organizer: 日本遺伝学会第92回大会
• [Presentation] ロングリードシーケンスを用いたイネ染色体添加系統におけるゲノム構造変異解析 (2020)
  • Author(s): 保坂 碧、真弓 彩夏、安井 秀、野々村 賢一、辻 寛之
  • Organizer: 日本育種学会第138回講演会
• [Presentation] ホウレンソウ育種の効率化に向けた Pseudomoleculeの構築 (2020)
  • Author(s): 平川 英樹、豊田 敦、伊藤 武彦、鈴木 穣、永野 惇、杉山 優、小野寺 康之
  • Organizer: 日本育種学会第138回講演会
• [Presentation] 新規ホウレンソウ pseudomolecule を用いた重要育種形質のQTL解析 (2020)
  • Author(s): 小野寺 康之、杉山 優、豊田 敦、伊藤 武彦、鈴木 穣、永野 惇、平川 英樹
  • Organizer: 日本育種学会第138回講演会
• [Presentation] Ar・Feイオンビーム照射によって生じるクロレラ染色体の断片化と染色体再編成 (2020)
  • Author(s): 石井公太郎、風間裕介、浅野円花、阿部知子、河野重行
  • Organizer: 日本育種学会第138回講演会
• [Presentation] ホウレンソウ育種の効率化に向けたPseudomoleculeの構築 (2020)
  • Author(s): 平川英樹
  • Organizer: 日本育種学会第138回講演会
• [Presentation] 新規ホウレンソウpseudomoleculeを用いた重要育種形質のQTL解析 (2020)
  • Author(s): 小野寺康之
  • Organizer: 日本育種学会第138回講演会
• [Presentation] マウス大脳新皮質錐体細胞との比較による海馬CA1錐体細胞の移動制御要因の解明 (2020)
  • Author(s): 北澤彩子、大石康二、吉永怜史、シンミンギョン、林周宏、久保健一郎、仲嶋一範
  • Organizer: 日本解剖学会第108回関東支部学術集会
• [Presentation] Runx2は骨格発生においてクロマチンランドスケープを規定する (2020)
  • Author(s): 北條宏徳、齋藤琢、小野寺晶子、東俊文、鄭雄一、大庭伸介
  • Organizer: 日本骨代謝学会学術集会
• [Presentation] ヒメミカヅキモのPR-IPは、性フェロモンであるが有性生殖に必須ではない (2020)
  • Author(s): 山口里帆子、福島早貴、今詩織、神田奈保、関本弘之
  • Organizer: 日本植物学会第84回大会
• [Presentation] シロイヌナズナの葉の発生・分化におけるzinc-finger protein AS2によるエピジェネティック制御 (2020)
  • Author(s): 日比野哲紀、高橋広夫、鈴木雅貴、Vial-Pradel Simon、町田泰則、小島晶子、町田千代子
  • Organizer: 日本植物学会第84回大会
• [Presentation] 重力屈性が野生型と逆になるヒメツリガネゴケ突然変異体gtr2の単離 (2020)
  • Author(s): 逵ローレンスかおる、小針寛乃、大塚沙穂子、日渡祐二
  • Organizer: 日本植物学会第84回大会
• [Presentation] 日本犬の成立に寄与したニホンオオカミのゲノム領域 (2020)
  • Author(s): 寺井洋平、五條堀淳、本郷一美、松村秀一、石黒直隆
  • Organizer: 日本進化学会第22回オンライン大会
• [Presentation] ヴィクトリア湖産シクリッドHaplochromis chilotesの全ゲノム配列解析による分集団における適応過程の解明 (2020)
  • Author(s): 中村遥奈、畑島諒、相原光人、豊田敦、伊藤武彦、二階堂雅人
  • Organizer: 日本進化学会第22回オンライン大会
• [Presentation] ヴィクトリア湖固有シクリッド Haplochromis sp. “matumbi hunter”の遺伝的多様性 (2020)
  • Author(s): 今本南、中村遥奈、相原光人、伊藤武彦、二階堂雅人
  • Organizer: 日本進化学会第22回オンライン大会
• [Presentation] Population Genomic Analysis of Drosophila albomicans from Taiwan and Japan (2020)
  • Author(s): Sultan Lulecioglu
  • Organizer: 日本進化学会第22回オンライン大会
• [Presentation] ヴィクトリア湖固有シクリッドHaplochromis sp. “matumbi hunter”の遺伝的多様性 (2020)
  • Author(s): 今本南、中村遥奈、相原光人、伊藤武彦、二階堂雅人
  • Organizer: 日本進化学会第22回オンライン大会
• [Presentation] 環境中からの新規IncP-1群プラスミドの取得 (2020)
  • Author(s): 金子健成、中道孝一朗、森内良太、道羅英夫、金原和秀、新谷政己
  • Organizer: 日本進化学会第22回オンライン大会
• [Presentation] 異なるIncPromA群プラスミドの全塩基配列比較 (2020)
  • Author(s): 山本雪絵、早川雅也、森内良太、道羅英夫、新谷政己、金原和秀
  • Organizer: 日本進化学会第22回オンライン大会
• [Presentation] 薬剤耐性遺伝子の伝播に寄与するプラスミドの収集 (2020)
  • Author(s): 中道 孝一朗、金子 健成、森 光矢、森内 良太、道羅 英夫、金原 和秀、二又 裕之、新谷政己
  • Organizer: 日本進化学会第22回オンライン大会
• [Presentation] 初冬型および晩冬型フユシャク類の生活史比較 : 平行種分化の謎に迫る (2020)
  • Author(s): 山本哲史、工藤誠也、佐藤臨、池田紘士、藤澤知親、野村翔太、曽田貞滋
  • Organizer: 日本進化学会第22回オンライン大会
• [Presentation] ツメガエル幼生尾再生に促進的に働く免疫細胞の同定 (2020)
  • Author(s): 出口 桃子、深澤 太郎、久保 健雄
  • Organizer: 日本動物学会第91回大会
• [Presentation] シクリッドにおける唇肥大化の平行進化メカニズム (2020)
  • Author(s): 畑島諒、豊田敦、梶谷嶺、伊藤武彦、二階堂雅人
  • Organizer: 日本動物学会第91回大会
• [Presentation] 分裂酵母の新規RNA結合タンパク質Nrp1の機能解析 (2020)
  • Author(s): 湯川格史
  • Organizer: 日本農芸化学会2020年度大会
• [Presentation] 骨格筋の抗重力について考える (2020)
  • Author(s): 瀬原淳子
  • Organizer: 日本分子生物学会年会フォーラム「骨格筋細胞研究がリードする新しい健康科学の分子生物学新機軸」
• [Presentation] DEAD-box RNA ヘリカーゼをコードするシロイヌナズナSMN2/HEN2はSMN1/RPS6による病害抵抗性に必須でありmekk1及びmpk4変異体の矮性を伴う防御反応表現型に関与する (2020)
  • Author(s): 高木桃子、岩本直樹、久保佑太、森本貴行、高木宏樹、高橋史憲、西内巧、田中啓介、太治輝昭、上中弘典、篠崎一雄、秋光和也、寺内良平、白須賢、市村和也
  • Organizer: 令和2年度日本植物病理学会関西部会
• [Book] ゲノム編集技術を応用した製品開発とその実用化 ～研究開発動向・課題解決策・技術予測と市場展望～ (2021)
  • Author(s): 小西裕之
  • Pages: 213-226
  • Total Pages: 602
  • Publisher: (株)技術情報協会
• [Book] 人間の本質にせまる科学-自然人類学の挑戦 (2021)
  • Author(s): 太田博樹
  • Pages: 123-138
  • Total Pages: 280
  • Publisher: 東京大学出版会
• [Book] 遺伝子医学 35号 11巻1号 (2021)
  • Author(s): 鹿島幸恵、鈴木絢子、鈴木穣
  • Pages: 142-146
  • Total Pages: 176
  • Publisher: 株式会社 メディカルドゥ
• [Book] ゲノム編集技術を応用した製品開発とその実用化 (2021)
  • Author(s): 権藤洋一
  • Pages: 327-338
  • Total Pages: 602
  • Publisher: 技術情報協会
• [Book] 魚類の性決定・性分化・性転換 : これまでとこれから (2021)
  • Author(s): 菊池潔
  • Pages: 33-74
  • Total Pages: 242
  • Publisher: 恒星社厚生閣
• [Book] 実験医学別冊独習 Pythonバイオ情報解析 (2021)
  • Author(s): 先進ゲノム解析研究推進プラットフォーム(編)
  • Total Pages: 407
  • Publisher: 羊土社
• [Book] 実験医学「マルチオミクスを使って得られた最新知見」 (2020)
  • Author(s): 北條広朗、水野林、河岡慎平
  • Pages: 1300-1305
  • Total Pages: 139
  • Publisher: 羊土社
• [Book] 実験医学「新規の創薬モダリティ細胞医薬」 (2020)
  • Author(s): 小西理予、河岡慎平
  • Pages: 100-106
  • Total Pages: 243
  • Publisher: 羊土社
• [Book] 実験医学増刊 機械学習を生命科学に使う (2020)
  • Author(s): 森宙史
  • Pages: 88-94
  • Total Pages: 238
  • Publisher: 羊土社
• [Book] 実験医学 Vol.38 No.9 (2020)
  • Author(s): 関真秀、鈴木絢子、岡実穂、鈴木穣
  • Pages: 1511-1522
  • Total Pages: 147
  • Publisher: 羊土社
• [Book] 遺伝子医学 34号 10巻4号 (2020)
  • Author(s): 鈴木絢子、鹿島幸恵、関真秀、鈴木穣
  • Pages: 128-134
  • Total Pages: 176
  • Publisher: 株式会社 メディカルドゥ
• [Book] カイコの科学 (2020)
  • Author(s): 藤原晴彦
  • Pages: 51-52
  • Total Pages: 224
  • Publisher: 朝倉書店
• [Book] 生体の科学 71巻2号 (2020)
  • Author(s): 鈴木絢子、鹿島幸恵、関真秀、鈴木穣
  • Pages: 102-107
  • Total Pages: 184
  • Publisher: 医学書院
• [Book] 昆虫と自然 (2020)
  • Author(s): 稲富桃子, Shin Dungsun, Lai Yi-Ting, 松本竜実, 松野健治
  • Pages: 23-26
  • Total Pages: 36
  • Publisher: ニュー・サイエンス社
• [Remarks] 領域ホームページ
  • URL: https://www.genome-sci.jp/
• [Remarks] アカハライモリ遺伝子配列情報のデータベース。今後ゲノム情報を加えていく予定である。
  • URL: http://antler.is.utsunomiya-u.ac.jp/imori/
• [Remarks] Spinach Genome DataBase (現在、当該論文の査読中のためパスワード制限を付けている)
  • URL: http://spinach.kazusa.or.jp
• [Remarks] ゼニゴケゲノムDB : MarpolBase。モデル植物である ゼニゴケゲノムの研究支援サイトとして、ゲノムブラウザ・解析ツール・遺伝子名称管理サイトを運用している。新規ゲノム配列の追加、発現量データベースの機能追加を行なった。
  • URL: http://marchantia.info
• [Remarks] 微生物アノテーションパイプラインDFAST。原核微生物のための自動アノテーションサービスを提供する。ゲノムの生物種名・クオ リティチェック機能の新規開発と、DDBJスパコンへのサービス移行を行なった。
  • URL: https://dfast.ddbj.nig.ac.jp
• [Remarks] SonicParanoid (高速オルソログ遺伝子解析ソフトウェア)
  • URL: http://iwasakilab.k.u-tokyo.ac.jp/sonicparanoid/
• [Remarks] ProkAtlas (微生物生息環境データベース)
  • URL: https://msk33.github.io/prokatlas.html
• [Remarks] CUT&RUN解析パイプライン
  • URL: https://github.com/khigashi1987/CUTRUN_Nextflow
• [Patent(Industrial Property Rights)] miR302核酸改変体 (2020)
  • Inventor(s): 石井秀始、今野雅允、小比賀聡、森正樹
  • Industrial Property Rights Holder: 大阪大学
  • Industrial Property Rights Type: 特許
  • Industrial Property Number: PCT/JP2020/017659
  • Overseas
• [Patent(Industrial Property Rights)] エピジェネティックスを標的とした新規医薬 (2020)
  • Inventor(s): 石井秀始、今野雅允、小関準、浅井歩、目黒寛司、赤井周司、川野泰彦、布村一人
  • Industrial Property Rights Holder: 大阪大学
  • Industrial Property Rights Type: 特許
  • Industrial Property Number: PCT/JP2020/017607
  • Overseas