• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to project page

2011 Fiscal Year Final Research Report

Molecular phylogeny of geckos using new mitogenomic approaches

Research Project

  • PDF
Project/Area Number 20370033
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Biodiversity/Systematics
Research InstitutionNagoya City University

Principal Investigator

KUMAZAWA Yoshinori  名古屋市立大学, 大学院・システム自然科学研究科, 教授 (60221941)

Research Collaborator HASHIGUCHI Yasuyuki  大阪医科大学, 医学部, 助教 (70436517)
YAMADA Chiemi  名古屋市立大学, 大学院・システム自然科学研究科, 研究員
JONNIAUX Pierre  名古屋市立大学, 大学院・システム自然科学研究科, 研究員
Project Period (FY) 2008 – 2011
Keywords爬虫類 / ヤモリ / ミトコンドリア / 分子系統 / 次世代シーケンサー
Research Abstract

We established a method to sequence multiple complete mitochondrial genomes in parallel with the high-throughput sequencer. The efficiency and accuracy in the sequencing was confirmed using several reptilian individuals that had been sequenced for their mitogenomes manually. We have obtained dozens of complete or nearly complete mitogenomes to find new examples of gene rearrangements, as well as phylogenetic relationships of geckos.

  • Research Products

    (20 results)

All 2012 2011 2010 2009 2008 Other

All Journal Article (7 results) (of which Peer Reviewed: 7 results) Presentation (10 results) Book (2 results) Remarks (1 results)

  • [Journal Article] Mitochondrial genomes of two African geckos of genus Hemitheconyx(Squamata : Eublepharidae)2012

    • Author(s)
      Jonniaux P and Kumazawa Y
    • Journal Title

      Mitochondrial DNA

      Volume: (印刷中)

    • DOI

      DOI:10.3109/19401736.2012.668898

    • Peer Reviewed
  • [Journal Article] Characterization of squamate olfactory receptor genes and their transcripts by the high-throughput sequencing approach2012

    • Author(s)
      Dehara Y, Hashiguchi Y, Matsubara K, Yanai T, Kubo M and Kumazawa Y
    • Journal Title

      Genome Biology and Evolution

      Volume: 4(4) Pages: 602-616

    • DOI

      DOI:10.1093/gbe/evs041

    • Peer Reviewed
  • [Journal Article] Mitochondrial DNA variability within Uromastyx ornata philbyi(Agamidae : Squamata) from southwestern Saudi Arabia2012

    • Author(s)
      Amer SAM, Mohamed MA, Wilms TM, Shobrak M and Kumazawa Y
    • Journal Title

      Comparative and Functional Genomics

      Pages: 851379

    • DOI

      DOI:10.1155/2012/851379

    • Peer Reviewed
  • [Journal Article] Preliminary molecular variability within Uromastyx aegyptia microlepis(Reptilia : Agamidae) inhabiting Saudi Arabia2011

    • Author(s)
      Amer SAM, Montaser MM and Kumazawa Y
    • Journal Title

      World Applied Sciences Journal

      Volume: 12 Pages: 1955-1961

    • Peer Reviewed
  • [Journal Article] Mitochondrial genomes of acrodont lizards : timing of gene rearrangements and phylogenetic and biogeographic implications2010

    • Author(s)
      Okajima Y and Kumazawa Y
    • Journal Title

      BMC Evolutionary Biology

      Volume: 10 Pages: 141

    • DOI

      DOI:10.1186/1471-2148-10-141

    • Peer Reviewed
  • [Journal Article] Mitogenomic perspectives into iguanid phylogeny and biogeography : Gondwanan vicariance for the origin of Madagascan oplurines2009

    • Author(s)
      Okajima Y and Kumazawa Y
    • Journal Title

      Gene

      Volume: 441 Pages: 28-35

    • DOI

      DOI:10.1016/j.gene.2008.06.011

    • Peer Reviewed
  • [Journal Article] Molecular phylogenetic and dating analyses using mitochondrial DNA sequences of eyelid geckos(Squamata : Eublepharidae)2008

    • Author(s)
      Jonniaux P and Kumazawa Y
    • Journal Title

      Gene

      Volume: 407 Pages: 105-115

    • DOI

      DOI:10.1016/j.gene.2007.09.023

    • Peer Reviewed
  • [Presentation] 次世代シーケンシングによる新規ミトコンドリアゲノム配列決定の効率性と正確性2011

    • Author(s)
      熊澤慶伯
    • Organizer
      日本進化学会第13回大会
    • Place of Presentation
      京都大学(京都市)
    • Year and Date
      2011-08-30
  • [Presentation] ヤモリ類の系統関係とミトコンドリアゲノムの遺伝子配置の変動2011

    • Author(s)
      熊澤慶伯、三浦沙綾、ピエールジョニオ、山田知江美、橋口康之
    • Organizer
      日本進化学会第13回大会
    • Place of Presentation
      京都大学(京都市)
    • Year and Date
      2011-08-30
  • [Presentation] カメ類のミトコンドリアゲノムにおける分子進化速度の不均一性2011

    • Author(s)
      山田知江美、柴田弘紀、熊澤慶伯
    • Organizer
      日本進化学会第13回大会
    • Place of Presentation
      京都大学(京都市)
    • Year and Date
      2011-08-30
  • [Presentation] 中-新生代の大陸移動と爬虫類の進化2010

    • Author(s)
      熊澤慶伯
    • Organizer
      日本進化学会第12回大会「大陸移動と動物の進化2億年」シンポジウム
    • Place of Presentation
      東京工業大学(東京都)
    • Year and Date
      2010-08-05
  • [Presentation] Molecular phylogeny and biogeography of lizards2010

    • Author(s)
      Kumazawa Y and Okajima Y
    • Organizer
      The International Symposium on Biodiversity Sciences 2010 "Genome, Evolution and Environment"
    • Place of Presentation
      ルブラ王山ホテル(名古屋市)
    • Year and Date
      2010-08-01
  • [Presentation] 爬虫類の高次系統と生物地理2009

    • Author(s)
      熊澤慶伯
    • Organizer
      日本進化学会第11回大会「脊椎動物の高次系統と分子進化」ワークショップ
    • Place of Presentation
      北海道大学(札幌市)
    • Year and Date
      2009-09-03
  • [Presentation] Reptilian phylogenetics using mitochondrial genomes2008

    • Author(s)
      Kumazawa Y
    • Organizer
      The first international symposium of the Korean Tree of Life(KTOL) research group "Genomics and Phylogenetics"
    • Place of Presentation
      Korea University, Seoul, Korea
    • Year and Date
      2008-12-05
  • [Presentation] カメレオン類ミトコンドリアゲノムの構造的特徴と系統解析2008

    • Author(s)
      岡島泰久、熊澤慶伯
    • Organizer
      日本進化学会第10回大会
    • Place of Presentation
      東京大学(東京都)
    • Year and Date
      2008-08-22
  • [Presentation] Molecular phylogenetic and dating analyses using mitochondrial DNA sequences of eyelid geckos2008

    • Author(s)
      Pierre Jonniaux and Yoshinori Kumazawa
    • Organizer
      日本進化学会第10回大会
    • Place of Presentation
      東京大学(東京都)
    • Year and Date
      2008-08-22
  • [Presentation] Molecular evolution of mitochondrial genomes and phylogenetics in reptiles2008

    • Author(s)
      Kumazawa Y
    • Organizer
      Symposium "Innovations in Immunologicals and Animal Toxins"
    • Place of Presentation
      Instituto Butantan, San Paulo, Brazil
    • Year and Date
      2008-08-01
  • [Book] 第2版古生物学事典、日本古生物学会編2010

    • Author(s)
      熊澤慶伯
    • Total Pages
      211, 338, 444-445, 476-477, 584
    • Publisher
      朝倉書店
  • [Book] 第1版生物の事典、石原勝敏・末光隆志編2010

    • Author(s)
      熊澤慶伯
    • Total Pages
      43-45, 47-49, 560
    • Publisher
      朝倉書店
  • [Remarks]

    • URL

      http://www.nsc.nagoya-cu.ac.jp/~kuma/

URL: 

Published: 2013-07-31  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi