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2012 Fiscal Year Final Research Report

Elucidation of nuclear export machinery of tRNA by crystal structural analysis of exportin/tRNA complex

Research Project

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Project/Area Number 22370041
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Structural biochemistry
Research InstitutionOsaka University

Principal Investigator

YAMASHITA Eiki  大阪大学, 蛋白質研究所, 助教 (00294132)

Research Collaborator YAMAZAWA Ryuji  大阪大学, 蛋白質研究所, 博士研究員
KOBAYASHI Takeshi  大阪大学, 大学院・理学研究科, 博士前期課程1 年
Project Period (FY) 2010 – 2012
Keywords繊結晶解析 / 核-細胞質間物質輸送 / 構造生物学
Research Abstract

In eukaryotic cells, the nucleus, where transcription occurs, and thecytoplasm, where translation takes place, are separated by the nuclear envelope. Theregulation of nucleo-cytoplasmic transport of proteins and RNAs is essential for biologicalactivity. Here, we solve crystal structures of a nuclear export factor and export factorcomplex for non-coding RNA export from the nucleus and the crystal structures reveal RNArecognition mechanism of the nuclear export factor transporting various non cordingRNAs.

  • Research Products

    (20 results)

All 2013 2012 2011 2010 Other

All Journal Article (10 results) (of which Peer Reviewed: 10 results) Presentation (8 results) Book (1 results) Remarks (1 results)

  • [Journal Article] Cramer W. A., Quinone-dependent proton transfer pathways in the photosynthetic cytochrome b6f complex.2013

    • Author(s)
      HasanS.S.,YamashitaE.,BaniulisD.,CramerW.A.
    • Journal Title

      Proc Natl Acad Sci USA

      Volume: 110 Pages: 4297-4302

    • Peer Reviewed
  • [Journal Article] Crystal structure of the C-terminal domain of Mu phage central spike and functions of bound calcium ion.2013

    • Author(s)
      HaradaK.,YamashitaE.,NakagawaA.,MiyafusaT.,TsumotoK.,UenoT.,ToyamaY.,TakedaS.
    • Journal Title

      Biochim Biophys Acta

      Volume: 1834 Pages: 284-291

    • Peer Reviewed
  • [Journal Article] Pathways of colicin import:utilization of BtuB,OmpF porin and the TolC drug-export protein.2012

    • Author(s)
      ZakharovS.D.,SharmaO.,ZhalninaM.V.,YamashitaE.,CramerW.A.
    • Journal Title

      Biochem.Soc.Trans.

      Volume: 40 Pages: 1463-1468

    • Peer Reviewed
  • [Journal Article] Crystallization and preliminary X-ray crystallographic study of the human MST2 SARAH domain.2011

    • Author(s)
      SongJ.,HongH.,ChoiS.,LeeY.H.,YamashitaE.,BaeS.C.,ParkI.Y.,LeeS.J.
    • Journal Title

      Acta Cryst.

      Volume: F67 Pages: 1403-1405

    • Peer Reviewed
  • [Journal Article] Conservation of Lipid Functions in Cytochrome bc Complexes2011

    • Author(s)
      HasanS.S.,YamashitaE.,RyanC.M.,WhiteleggeJ.P.,CramerW.A.
    • Journal Title

      J Mol.Biol.

      Volume: 414 Pages: 145-162

    • Peer Reviewed
  • [Journal Article] The host-binding domain of the P2 phage tail spike reveals a trimeric iron-binding structure.2011

    • Author(s)
      YamashitaE.,NakagawaA.,TakahashiJ.,TsunodaK.I.,YamadaS.,TakedaS.
    • Journal Title

      Acta Cryst.

      Volume: F67 Pages: 837-841

    • Peer Reviewed
  • [Journal Article] Distinguishing between Cl(-) and O(2)(2-) as the bridging element between Fe(3+) and Cu(2+) in resting-oxidized cytochrome c oxidase.2011

    • Author(s)
      Suga M., Yano N., Muramoto K., Shinzawa-Itoh K., Maeda T., Yamashita E., Tsukihara T., Yoshikawa S.
    • Journal Title

      Acta Cryst.

      Volume: D67 Pages: 742-744

    • Peer Reviewed
  • [Journal Article] Crystal structure of the cytoplasmic PTEN-like region of Ci-VSP provides insight into substrate specificity and redox regulation of the phosphoinositide phosphatase activity.2011

    • Author(s)
      Matsuda M., Takeshita K., Kurokawa T., Sakata S., Suzuki M., Yamashita E., Okamura Y., Nakagawa A.
    • Journal Title

      J. Biol. Chem.

      Volume: 286 Pages: 23368-23377

    • Peer Reviewed
  • [Journal Article] tructural insight into maintenance methylation by mouse DNA methyltransferase 1 (Dnmt1).2011

    • Author(s)
      Takeshita K., Suetake I., Yamashita E., Suga M., Narita H., Nakagawa A., Tajima S.
    • Journal Title

      Proc Natl Acad Sci U S A.

      Volume: 108 Pages: 9055-9059

    • Peer Reviewed
  • [Journal Article] Selective nuclear export mechanism of small RNAs.2011

    • Author(s)
      Lee S. J., Jiko C., Yamashita E., Tsukihara T.
    • Journal Title

      Curr. Opin, Struc. Biol.

      Volume: 21 Pages: 101-108

    • Peer Reviewed
  • [Presentation] Spring-8 生体超分子複合体構造解析ビームライン(大阪大学蛋白質研究所)BL44XU の現状2013

    • Author(s)
      山下栄樹
    • Organizer
      日本放射光学会
    • Place of Presentation
      名古屋大学
    • Year and Date
      2013-01-12
  • [Presentation] Exportin-5 によるRNAsの核外輸送メカニズムの解明2012

    • Author(s)
      山澤龍治、山下栄樹
    • Organizer
      日本蛋白質科学会
    • Place of Presentation
      名古屋大学
    • Year and Date
      2012-06-22
  • [Presentation] Spring-8 生体超分子複合体構造解析ビームライン(大阪大学蛋白質研究所)BL44XU の現状2012

    • Author(s)
      山下栄樹
    • Organizer
      日本放射光学会
    • Place of Presentation
      鳥栖市民文化会館
    • Year and Date
      2012-01-08
  • [Presentation] Spring-8 阪大蛋白研ビームラインBL44XU の現状2010

    • Author(s)
      山下栄樹
    • Organizer
      日本結晶学会
    • Place of Presentation
      大阪大学
    • Year and Date
      20101203-05
  • [Presentation] pre-microRNA 核外輸送複合体のX 線結晶構造解析2010

    • Author(s)
      山下栄樹
    • Organizer
      BMB2010
    • Place of Presentation
      神戸国際会議場
    • Year and Date
      2010-12-10
  • [Presentation] タンパク質合成を抑制する小さなRNA を輸送する仕組みの解明2010

    • Author(s)
      山下栄樹
    • Organizer
      SPring-8合同コンファレンス
    • Place of Presentation
      東京ステーションコンファレンス
    • Year and Date
      2010-11-04
  • [Presentation] Nuclear translocation machinery of pre-microRNA.2010

    • Author(s)
      SooJaeLee、EikiYamashita
    • Organizer
      AsCA2010
    • Place of Presentation
      プサン(韓国)
    • Year and Date
      2010-11-01
  • [Presentation] microRNA核外輸送複合体のX線結晶構造解析2010

    • Author(s)
      慈幸千真理、山下栄樹
    • Organizer
      日本蛋白質科学会
    • Place of Presentation
      札幌コンベンションセンター
    • Year and Date
      2010-06-18
  • [Book] X線結晶構造解析のためのタンパク質調製法、タンパク質実験ノート(上)改訂第4 版2011

    • Author(s)
      山下栄樹
    • Total Pages
      198-201
    • Publisher
      羊土社
  • [Remarks]

    • URL

      http://www.protein.osaka-u.ac.jp/rcsfp/supracryst/jp/

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Published: 2014-08-29   Modified: 2015-10-07  

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