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Quantum chemistry method with electron correlation effect for the analysis of the cooperative molecular recognition process in DNA

Research Project

Project/Area Number 23245005
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Research Field Physical chemistry
Research InstitutionKyushu University

Principal Investigator

Aoki Yuriko  九州大学, 総合理工学研究科(研究院), 教授 (10211690)

Co-Investigator(Renkei-kenkyūsha) GU Feng Long  華南師範大学, 教授 (80404036)
IMAMURA Akira  広島大学, 名誉教授 (70076991)
Research Collaborator Orimoto Yuuichi  
KORCHOWIEC Jacek  
MAKOWSKI Marcin  
KIRTMAN Bernie  
CHAMPAGNE Benoît  
SPRINGBORG Michael  
Project Period (FY) 2011-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥49,270,000 (Direct Cost: ¥37,900,000、Indirect Cost: ¥11,370,000)
Fiscal Year 2015: ¥7,540,000 (Direct Cost: ¥5,800,000、Indirect Cost: ¥1,740,000)
Fiscal Year 2014: ¥9,620,000 (Direct Cost: ¥7,400,000、Indirect Cost: ¥2,220,000)
Fiscal Year 2013: ¥9,620,000 (Direct Cost: ¥7,400,000、Indirect Cost: ¥2,220,000)
Fiscal Year 2012: ¥9,620,000 (Direct Cost: ¥7,400,000、Indirect Cost: ¥2,220,000)
Fiscal Year 2011: ¥12,870,000 (Direct Cost: ¥9,900,000、Indirect Cost: ¥2,970,000)
KeywordsElongation法 / 分子軌道法 / 電子相関 / 構造最適化 / DNA / ミスマッチ / バンド構造 / タンパク質 / 量子化学 / 電子状態 / 導電性 / Elongation法 / DNA / 塩基配列 / 局所状態密度
Outline of Final Research Achievements

Quantum chemistry has been rapidly developed along with remarkable progress in recent computers, since the Nobel Prize in Chemistry 1981, awarded to Kenichi Fukui, first time in Japan. Even with recently advanced peta-scale supercomputer, however, the accurate quantum chemical calculations should require enormous computational time. We have mainly been engaged in developing an original Order (N) computational method, theoretical synthesis of one-dimensional polymers - elongation method - toward three dimensional systems to become applicable to entangled DNA and proteins with high efficiency and accuracy. To make it use to the analysis of cooperative phenomena in DNA, algorisms for local geometry optimization, electron correlation and excited states calculations are incorporated into 3D-ELG method, and then geometrical structures, band structures, mismatch process were examined for DNA and proteins.

Report

(6 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Annual Research Report
  • 2013 Annual Research Report
  • 2012 Annual Research Report
  • 2011 Annual Research Report
  • Research Products

    (100 results)

All 2016 2015 2014 2013 2012 2011 Other

All Int'l Joint Research (2 results) Journal Article (33 results) (of which Peer Reviewed: 33 results,  Acknowledgement Compliant: 2 results,  Open Access: 4 results) Presentation (60 results) (of which Int'l Joint Research: 9 results,  Invited: 7 results) Book (5 results)

  • [Int'l Joint Research] Jagiellonian University/Faculty of Chemistry(ポーランド)

    • Related Report
      2015 Annual Research Report
  • [Int'l Joint Research] South China Normal University/Faculty of Chemistry&Environment(中国)

    • Related Report
      2015 Annual Research Report
  • [Journal Article] An efficient unrestricted PCM-elongation method for large high-spin polymer/dendrimer systems2016

    • Author(s)
      Xun Zhu, Yuuichi Orimoto, and Yuriko Aoki
    • Journal Title

      Z. Phys. Chem.

      Volume: 印刷中 Issue: 5-7 Pages: 667-680

    • DOI

      10.1515/zpch-2015-0722

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Theoretical investigation of the pressure-induced insulator-to-metal-to-insulator transitions in one-dimensional bis(dimethylglyoximato) platinum(II), Pt(dmg)22015

    • Author(s)
      Kai Liu, Yuuichi Orimoto, and Yuriko Aoki
    • Journal Title

      Polyhedron

      Volume: 87 Pages: 141-146

    • DOI

      10.1016/j.poly.2014.11.013

    • Related Report
      2015 Annual Research Report 2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Ab initio O(N) elongation-counterpoise method for BSSE-corrected interaction energy analyses in biosystems2015

    • Author(s)
      Yuuichi Orimoto, Ryohei Yamamoto, Peng Xie, Kai Liu, Akira Imamura, and Yuriko Aoki
    • Journal Title

      The Journal of Chemical Physics

      Volume: 142 Issue: 10 Pages: 104111-104111

    • DOI

      10.1063/1.4913931

    • Related Report
      2015 Annual Research Report 2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Intermediate electrostatic field for the accurate calculation of generalized elongation method2015

    • Author(s)
      Kai Liu, Jacek Korchowiec, and Yuriko Aoki
    • Journal Title

      ChemPhysChem

      Volume: in press Issue: 7 Pages: 1551-1556

    • DOI

      10.1002/cphc.201402901

    • Related Report
      2015 Annual Research Report 2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Development of minimized mixing molecular orbital method for designing organic ferromagnets2015

    • Author(s)
      Xun Zhu, and Yuriko Aok
    • Journal Title

      J. Comput. Chem.

      Volume: 36 Issue: 16 Pages: 1232-1239

    • DOI

      10.1002/jcc.23915

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Interaction of OH- with Xylan and Its Hydrated Complexes: Structures and Molecular Dynamics Study Using Elongation Method2015

    • Author(s)
      Lin Jin, Kai Liu, and Yuriko Aoki
    • Journal Title

      J. Mol. Model.

      Volume: 21 Issue: 5

    • DOI

      10.1007/s00894-015-2666-5

    • Related Report
      2015 Annual Research Report 2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Elongation method for electronic structure calculations of random DNA sequences2015

    • Author(s)
      Yuuichi Orimoto, Kai Liu, and Yuriko Aoki
    • Journal Title

      J. Comput. Chem.

      Volume: 36 Issue: 28 Pages: 2103-2113

    • DOI

      10.1002/jcc.24047

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Efficient prediction of high spin ground state stability in organic polyradicals under solvent effects2015

    • Author(s)
      Xun Zhu, and Yuriko Aoki
    • Journal Title

      Chem. Phys. Lett.

      Volume: 637 Pages: 143-147

    • DOI

      10.1016/j.cplett.2015.07.060

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Development of minimized mixing molecular orbital method for designing organic ferromagnets2015

    • Author(s)
      Xun Zhu and Yuriko Aoki
    • Journal Title

      J. Comput. Chem.

      Volume: in press

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Reply to the Comment of Prof. Ladik on Peng Xie, Hiroyuki Teramae, Kai Liu, and Yuriko Aoki: “Electronic States of Mixed Base Pairs Systems of DNA and the Effect of Base Composition and Sequences on the Band Structures Using Screw Axis Translational Symmetry”2014

    • Author(s)
      Peng Xie, Hiroyuki Teramae, Kai Liu, and Yuriko Aoki
    • Journal Title

      Int. J. Quantum Chem.

      Volume: 114 Issue: 4 Pages: 303-303

    • DOI

      10.1002/qua.24543

    • Related Report
      2014 Annual Research Report 2013 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Intermediate electrostatic field for the elongation method2014

    • Author(s)
      Piotr Kuzniarowicz, Kai Liu, Yuriko Aoki, Feng Long Gu, Anna Stachowicz, and Jacek Korchowiec
    • Journal Title

      J. Mol. Model.

      Volume: 20 Issue: 6

    • DOI

      10.1007/s00894-014-2277-6

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Intermediate electrostatic field for the elongation method2014

    • Author(s)
      P. Kuzniarowicz, K. Liu, Y. Aoki, F. L. Gu, A. Stachowicz, and J. Korchowiec
    • Journal Title

      J. Mol. Model.

      Volume: in press

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] An analytical approach to predict high-spin stability of conjugated hydrocarbon radical polymers using minimized mixing nonbonding molecular orbitals2013

    • Author(s)
      X. Zhu and Y. Aoki
    • Journal Title

      Curr. Phys. Chem.

      Volume: 3(1) Issue: 1 Pages: 99-112

    • DOI

      10.2174/1877946811303010014

    • Related Report
      2013 Annual Research Report 2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Three dimensional elongation method for large molecular calculations2013

    • Author(s)
      K. Liu, L. Peng, F. L. Gu, and Y. Aoki
    • Journal Title

      Chem. Phys. Lett.

      Volume: 560 Pages: 66-70

    • DOI

      10.1016/j.cplett.2012.12.046

    • Related Report
      2013 Annual Research Report 2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Electronic structures and molecular structures of polyynes2013

    • Author(s)
      A. Imamura and Y. Aoki
    • Journal Title

      Int. J. Quantum Chem.

      Volume: 113(4) Issue: 4 Pages: 423-427

    • DOI

      10.1002/qua.24244

    • Related Report
      2013 Annual Research Report 2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Electronic states of mixed base pairs systems of DNA and the effect of base composition and sequences on the band structures using screw axis translational symmetry2013

    • Author(s)
      P. Xie, H. Teramae, K. Liu, and Y. Aoki
    • Journal Title

      Int. J. Quantum Chem.

      Volume: 113(4) Issue: 4 Pages: 489-496

    • DOI

      10.1002/qua.24199

    • Related Report
      2013 Annual Research Report 2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] An Efficient Local Molecular Dynamics Polymerization Simulation Combined with an Ab Initio MO Method2013

    • Author(s)
      P. Xie, Y. Orimoto, and Y. Aoki
    • Journal Title

      Materials

      Volume: 6(3) Issue: 3 Pages: 870-885

    • DOI

      10.3390/ma6030870

    • Related Report
      2013 Annual Research Report 2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A modified localization scheme for the three-dimensional elongation method applied to large systems2013

    • Author(s)
      K. Liu, Y. Yan, F. L. Gu, and Y. Aoki
    • Journal Title

      Chem. Phys. Lett.

      Volume: 565 Pages: 143-147

    • DOI

      10.1016/j.cplett.2013.02.039

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Substituent Effects on Menshutkin-Type Reactions in the Gas Phase and Solutions: Theoretical Approach from the Orbital Interaction View2013

    • Author(s)
      L. Jiang, Y. Orimoto, and Y. Aoki
    • Journal Title

      J. Chem. Theory Comput.

      Volume: 9(9) Issue: 9 Pages: 4035-4045

    • DOI

      10.1021/ct4006163

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Stereoelectronic Effects in Menshutkin-Type SN2 Reactions: Theoretical Study Based on Through-Space/Bond Orbital Interaction Analysis2013

    • Author(s)
      L. Jiang, Y. Orimoto, and Y. Aoki
    • Journal Title

      J. Phys. Org. Chem.

      Volume: 26(11) Issue: 11 Pages: 885-891

    • DOI

      10.1002/poc.3186

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Helical molecular orbitals around straight-chain polyyne oligomers as models for molecular devices2013

    • Author(s)
      A. Imamura, and Y. Aoki
    • Journal Title

      Chem. Phys. Lett.

      Volume: 590 Pages: 136-140

    • DOI

      10.1016/j.cplett.2013.10.064

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Counter-ion effects of A- & B-type poly(dG)・poly(dC) and poly(dA)・poly(dT) DNA by elongation method2012

    • Author(s)
      P.Xie, K.Liu, F.L.Gu, Y.Aoki
    • Journal Title

      Int.J.Quantum Chem.

      Volume: 112(1) Issue: 1 Pages: 230-239

    • DOI

      10.1002/qua.23230

    • Related Report
      2012 Annual Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] An elongation method for large systems toward bio-systems2012

    • Author(s)
      Y. Aoki and F. L. Gu
    • Journal Title

      Phys. Chem. Chem. Phys.

      Volume: 14(21) Issue: 21 Pages: 7640-7668

    • DOI

      10.1039/c2cp24033e

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Geometry Optimization for Large Systems by the Elongation Method2012

    • Author(s)
      K. Liu, J. Korchowiec, F. L. Gu, and Y. Aoki
    • Journal Title

      Theor. Chem. Acc.

      Volume: 131 Issue: 10

    • DOI

      10.1007/s00214-012-1277-9

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Efficient algorithm for computing orbital energies within elongation method2012

    • Author(s)
      O. Loboda, F. L. Gu, A. Pomogaeva, M. Makowski, and Y. Aoki
    • Journal Title

      International Conference of Computational Methods in Sciences and Engineering 2009(ICCMSE 2009)

      Volume: 1504(1) Pages: 544-547

    • DOI

      10.1063/1.4771755

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Elongation Method for Linear Scaling2012

    • Author(s)
      F. L. Gu, and Y. Aoki
    • Journal Title

      International Conference of Computational Methods in Sciences and Engineering 2009(ICCMSE 2009)

      Volume: 1504(1) Pages: 167-175

    • DOI

      10.1063/1.4771712

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Generalized Elongation Method: From One-Dimension to Three-Dimension, International Conference of Computational Methods in Sciences and Engineering: Theory and Computation: Old Problems and New Challenge2012

    • Author(s)
      Y. Aoki, and F. L. Gu
    • Journal Title

      International Conference of Computational Methods in Sciences and Engineering 2009(ICCMSE 2009)

      Volume: 1504(1) Pages: 647-650

    • DOI

      10.1063/1.4771778

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Band Structure of Polymer Extracted from Oligomer Calculations by Elongation Method and Its Applications to Nanosystems2012

    • Author(s)
      A. Pomogaeva, M. Springborg, B. Kirtman, F. L. Gu, and Y. Aoki
    • Journal Title

      International Conference of Computational Methods in Sciences and Engineering 2009(ICCMSE 2009)

      Volume: 1504(1) Pages: 563-566

    • DOI

      10.1063/1.4771759

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Sharp Increase in the (Hyper)polarizabilities of Quinoid Type Isonaphtothiophene (INT) Oligomers: A Quantum Chemical Insight2012

    • Author(s)
      L. Jiang and Y. Aoki
    • Journal Title

      J. Phys. Chem. A

      Volume: 116(51) Issue: 51 Pages: 12492-12502

    • DOI

      10.1021/jp308681t

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] An analytical approach to predict high-spin stability of conjugated hydrocarbon radical polymers using minimized mixing nonbonding molecular orbitals2012

    • Author(s)
      X.Zhu, Y.Aoki
    • Journal Title

      Current Physical Chemistry

      Volume: (In press)

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Efficient algorithm for computing orbital energies within elongation method2012

    • Author(s)
      O.Loboda, F.L.Gu, A.Pomogaeva, M.Makowski, Y.Aoki
    • Journal Title

      International Conference of Computational Methods in Sciences and Engineering 2009, AIP Proceedings

      Volume: (In press)

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Highly accurate O(N) method for delocalized systems2011

    • Author(s)
      Y.Aoki, O.Loboda, K.Liu, M.A.Makowski, F.L.Gu
    • Journal Title

      Theor.Chem.Acc.

      Volume: 130(4-6) Issue: 4-6 Pages: 595-608

    • DOI

      10.1007/s00214-011-1011-z

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Guidelines proposed for designing organic ferromagnets by using quantum chemical approach2011

    • Author(s)
      S.Onitsuka, Y.Aoki
    • Journal Title

      Theor.Chem.Acc.

      Volume: 130(4-6) Issue: 4-6 Pages: 789-806

    • DOI

      10.1007/s00214-011-1037-2

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Presentation] Linear Scaling Method for Large Systems and its Applications to Nano-Bio Systems2015

    • Author(s)
      Yuriko Aoki
    • Organizer
      The 6th JCS International Symposium on Theoretical Chemistry (JCS-2015)
    • Place of Presentation
      Bratislava (Slovak Republic)
    • Year and Date
      2015-10-11
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Computational functional design of artificial DNAs: application of elongation method and through-space/bond interaction analysis2015

    • Author(s)
      Yuuichi Orimoto, and Yuriko Aoki
    • Organizer
      第42回国際核酸化学シンポジウム
    • Place of Presentation
      イーグレ姫路 (兵庫県姫路市)
    • Year and Date
      2015-09-23
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Analysis and modeling of molecular interactions in halogen-bonded cocrystal2015

    • Author(s)
      Wataru Mizukami, Ken Matsubara, and Yuriko Aoki
    • Organizer
      51st Symposium on Theoretical Chemistry(STC2015)
    • Place of Presentation
      Potsdam (Germany)
    • Year and Date
      2015-09-20
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 開殻分安定スピン状態予測のための結合性最Mixing(NB-MM)MO-ELG法2015

    • Author(s)
      Xun Zhu, and Yuriko Aoki
    • Organizer
      第9回分子化学討論会
    • Place of Presentation
      東京工業大学 (東京都目黒区)
    • Year and Date
      2015-09-16
    • Related Report
      2015 Annual Research Report
  • [Presentation] 相互作解析によるハロゲン結合をベースとした共結晶成過程の理解2015

    • Author(s)
      Ken Matsubara, Wataru Mizukami, and Yuriko Aoki
    • Organizer
      第9回分子化学討論会
    • Place of Presentation
      東京工業大学 (東京都目黒区)
    • Year and Date
      2015-09-16
    • Related Report
      2015 Annual Research Report
  • [Presentation] 大規模原子分子系に向けた効率的Elongation法の展開と応用2015

    • Author(s)
      Yuriko Aoki, Kai Liu, Wataru Mizukami, and Yuuichi Orimoto
    • Organizer
      第9回分子化学討論会
    • Place of Presentation
      東京工業大学 (東京都目黒区)
    • Year and Date
      2015-09-16
    • Related Report
      2015 Annual Research Report
  • [Presentation] 光電変換ワイヤの効率的理論設計法と応用2015

    • Author(s)
      Kouhei Kato, Yuuichi Orimoto, and Yuriko Aoki
    • Organizer
      第9回分子化学討論会
    • Place of Presentation
      東京工業大学 (東京都目黒区)
    • Year and Date
      2015-09-16
    • Related Report
      2015 Annual Research Report
  • [Presentation] 機能性人工核酸の理論的分子設計~導電性・強磁性・非線形光学特性~2015

    • Author(s)
      Yuuichi Orimoto, and Yuriko Aoki
    • Organizer
      第9回分子化学討論会
    • Place of Presentation
      東京工業大学 (東京都目黒区)
    • Year and Date
      2015-09-16
    • Related Report
      2015 Annual Research Report
  • [Presentation] An efficient quantum chemical approach for material design2015

    • Author(s)
      Yuriko Aoki
    • Organizer
      2015 International Symposium for Advanced Materials Research (ISAMR 2015)
    • Place of Presentation
      Sun Moon Lake (Taiwan)
    • Year and Date
      2015-08-16
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Theoretical design for NLO polymers2015

    • Author(s)
      Yuriko Aoki
    • Organizer
      2015 International Symposium for Advanced Materials Research (ISAMR 2015)
    • Place of Presentation
      Sun Moon Lake (Taiwan)
    • Year and Date
      2015-08-16
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Highly efficient electronic structure calculations of biomaterials for their functional design2015

    • Author(s)
      Yuuichi Orimoto, and Yuriko Aoki
    • Organizer
      2015 International Symposium for Advanced Materials Research (ISAMR 2015)
    • Place of Presentation
      Sun Moon Lake (Taiwan)
    • Year and Date
      2015-08-16
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Interaction of OH- with Xylan and Its Hydrated Complexes: Structures and Molecular Dynamics Study Using Elongation Method2015

    • Author(s)
      Lin Jin, and Yuriko Aoki
    • Organizer
      2015 International Symposium for Advanced Materials Research (ISAMR 2015)
    • Place of Presentation
      Sun Moon Lake (Taiwan)
    • Year and Date
      2015-08-16
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Elongation Method for Functional Design of Nano-Baio Systems2015

    • Author(s)
      Yuriko Aoki
    • Organizer
      The 15th International Congress of Quantum Chemistry (ICQC)
    • Place of Presentation
      Beijing (China)
    • Year and Date
      2015-06-08
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Efficient NLO Calculations by Elongation Method2015

    • Author(s)
      Yuriko Aoki
    • Organizer
      The 15th International Congress of Quantum Chemistry (ICQC) Satellite Meeting
    • Place of Presentation
      Nanjing (China)
    • Year and Date
      2015-06-01
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 大規模原子分子系の機能設計のための高速高精度量子化学計算法-Elongation法-の開発2015

    • Author(s)
      青木 百合子
    • Organizer
      第12回稲盛フロンティア研究講演会
    • Place of Presentation
      九州大学伊都キャンパス稲盛財団記念館(福岡市)
    • Year and Date
      2015-01-23
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] A Quantum Chemical Study on Cathode Active Materials of Organic Radical-Molecules in Secondary Battery2014

    • Author(s)
      Yuki Furutani and Yuriko Aoki
    • Organizer
      16th Cross Straits Symposium on Energy, Environmental Science and Technology (CSS-EEST 16)
    • Place of Presentation
      Jeju(Korea)
    • Year and Date
      2014-11-13 – 2014-11-15
    • Related Report
      2014 Annual Research Report
  • [Presentation] Order-N electronic structure calculations of natural and artificial DNAs towards their functional design2014

    • Author(s)
      Yuuichi Orimoto, Yuki Kawamura, Kai Liu, and Yuriko Aoki
    • Organizer
      第63回高分子討論会
    • Place of Presentation
      長崎大学文教キャンパス(長崎市)
    • Year and Date
      2014-09-24 – 2014-09-26
    • Related Report
      2014 Annual Research Report
  • [Presentation] Development of ELG method for highly accurate molecular design and its applications to large systems2014

    • Author(s)
      Yuriko Aoki, Kai Liu, Xun Zhu, Ryota Tsutsui, and Yuuichi Orimoto
    • Organizer
      第8回分子科学討論会
    • Place of Presentation
      広島大学東広島キャンパス(広島市)
    • Year and Date
      2014-09-21 – 2014-09-24
    • Related Report
      2014 Annual Research Report
  • [Presentation] Theoretical functional design of artificial DNAs by O(N) elongation method and TS/TB interaction analysis2014

    • Author(s)
      Yuuichi Orimoto, Yuki Kawamura, Kai Liu, and Yuriko Aoki
    • Organizer
      第8回分子科学討論会
    • Place of Presentation
      広島大学東広島キャンパス(広島市)
    • Year and Date
      2014-09-21 – 2014-09-24
    • Related Report
      2014 Annual Research Report
  • [Presentation] Recent development of highly accurate linear scaling elongation method and its applications to large systems2014

    • Author(s)
      Yuriko Aoki
    • Organizer
      2014 International Workshop on Frontiers of Theoretical and Computational Physics and Chemistry (WFTCPC 2014)
    • Place of Presentation
      Quzhou(China)
    • Year and Date
      2014-08-21 – 2014-08-24
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] 含金属ヘテロナノチューブの電子状態と機能解析に向けたElongation法の応用2014

    • Author(s)
      R. Tsutsui, K. Liu, Y. Orimoto, and Y. Aoki
    • Organizer
      第14回高分子計算機科学研究会討論会
    • Place of Presentation
      東京
    • Related Report
      2013 Annual Research Report
  • [Presentation] Elongation法による高分子の効率的構造最適化とNLO材料設計2014

    • Author(s)
      Y. Aoki, S. Abe, R. Tsutsui, K. Liu, and F. L. Gu
    • Organizer
      第14回高分子計算機科学研究会討論会
    • Place of Presentation
      東京
    • Related Report
      2013 Annual Research Report
  • [Presentation] Elongation法による磁性高分子設計と二次電池正極材料設計への応用2014

    • Author(s)
      Y. Furutani, X. Zhu, and Y. Aoki
    • Organizer
      第14回高分子計算機科学研究会討論会
    • Place of Presentation
      東京
    • Related Report
      2013 Annual Research Report
  • [Presentation] Intermediate field for the elongation method2013

    • Author(s)
      P. Kuzniarowicz, Y. Aoki, A. Stachowicz, and J. Korchowiec
    • Organizer
      Current Trends in Theoretical Chemistry VI
    • Place of Presentation
      Krakow(Poland)
    • Related Report
      2013 Annual Research Report
  • [Presentation] Elongation method for efficient and accurate calculations of large systems and applications to DNA, proteins, and nanotubes towards material design2013

    • Author(s)
      Y. Aoki
    • Organizer
      Current Trends in Theoretical Chemistry VI
    • Place of Presentation
      Krakow(Poland)
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Functional properties and electronic states of metal included BN/C heteronanotubes by Elongation method2013

    • Author(s)
      R. Tsutsui, K. Liu, Y. Orimoto, H. Honda, and Y. Aoki
    • Organizer
      第7回分子科学討論会
    • Place of Presentation
      京都
    • Related Report
      2013 Annual Research Report
  • [Presentation] Highly efficient analyses of I-M-I transition in quasi-1D metal complexes by elongation method2013

    • Author(s)
      K. Liu, Y. Orimoto, and Y. Aoki
    • Organizer
      第7回分子科学討論会
    • Place of Presentation
      京都
    • Related Report
      2013 Annual Research Report
  • [Presentation] Development of open-shell elongation method and its application to ferromagnetic material design2013

    • Author(s)
      X. Zhu, K. Liu, Y. Orimoto, and Y. Aoki
    • Organizer
      第7回分子科学討論会
    • Place of Presentation
      京都
    • Related Report
      2013 Annual Research Report
  • [Presentation] Through-space/bond interaction analysis on NLO properties enhancement of molecular switches2013

    • Author(s)
      L. Jiang, Y. Orimoto, and Y. Aoki
    • Organizer
      第7回分子科学討論会
    • Place of Presentation
      京都
    • Related Report
      2013 Annual Research Report
  • [Presentation] An efficient searching of optimized geometries for proteins and DNA by ELG-OPT method2013

    • Author(s)
      Y. Aoki, K. Liu, P. Xie, and Y. Orimoto
    • Organizer
      第7回分子科学討論会
    • Place of Presentation
      京都
    • Related Report
      2013 Annual Research Report
  • [Presentation] Highly effcient O(N) calculations of natural and artificial DNAs by elongation method2013

    • Author(s)
      Y. Orimoto, K. Liu, and Y. Aoki
    • Organizer
      第7回分子科学討論会
    • Place of Presentation
      京都
    • Related Report
      2013 Annual Research Report
  • [Presentation] Functional design of natural and artificial nucleic acids via ab initio order-N elongation method: computional approaches2013

    • Author(s)
      Y. Orimoto, K. Liu, and Y. Aoki
    • Organizer
      The 40th International Symposium on Nudeic Acids Chemistry
    • Place of Presentation
      神奈川
    • Related Report
      2013 Annual Research Report
  • [Presentation] A quantum chemical study on cathode active materials of organc radical-molecules in secondary battery2013

    • Author(s)
      Y. Furutani, Y. Orimoto, and Y. Aoki
    • Organizer
      14th Cross Straits Symposium on Energy and Environmental Science and Technology (CSS-EEST 14)
    • Place of Presentation
      福岡
    • Related Report
      2012 Annual Research Report
  • [Presentation] Functional properties of BN nanotubes by highly efficient Geometry optimization method2013

    • Author(s)
      R. Tsutsui, K. Liu, Y. Orimoto, and Y. Aoki
    • Organizer
      14th Cross Straits Symposium on Energy and Environmental Science and Technology (CSS-EEST 14)
    • Place of Presentation
      福岡
    • Related Report
      2012 Annual Research Report
  • [Presentation] Highly efficient quantum chemistry calculations of DNA for designing biomaterials2013

    • Author(s)
      Y. Orimoto, P. Xie, K. Liu, and Y. Aoki
    • Organizer
      14th Cross Straits Symposium on Energy and Environmental Science and Technology (CSS-EEST 14)
    • Place of Presentation
      福岡
    • Related Report
      2012 Annual Research Report
  • [Presentation] Insights into substituents and solvent effects on SN2 reaction by through space/bond interaction analysis2013

    • Author(s)
      L. Jiang, Y. Orimoto, and Y. Aoki
    • Organizer
      14th Cross Straits Symposium on Energy and Environmental Science and Technology (CSS-EEST 14)
    • Place of Presentation
      福岡
    • Related Report
      2012 Annual Research Report
  • [Presentation] A new ab-initio molecular dynamics method for aperiodic bio-polymer: Elongation-MD2012

    • Author(s)
      P. Xie, Y. Orimoto, and Y. Aoki
    • Organizer
      28th Symposium on Chemical Kinetics and Dynamics
    • Place of Presentation
      福岡
    • Related Report
      2012 Annual Research Report
  • [Presentation] Theoretical study of the solvent effects on functional donor-nanowire-acceptor systems by Elongation method with polarized continuum model2012

    • Author(s)
      H. Yang, Y. Orimoto, F. L. Gu, and Y. Aoki
    • Organizer
      28th Symposium on Chemical Kinetics and Dynamics
    • Place of Presentation
      福岡
    • Related Report
      2012 Annual Research Report
  • [Presentation] Stereoelectronic effects in organic reactions: Theoretical study based on through-space/bond interaction analysis2012

    • Author(s)
      L. Jiang, Y. Orimoto, and Y. Aoki
    • Organizer
      28th Symposium on Chemical Kinetics and Dynamics
    • Place of Presentation
      福岡
    • Related Report
      2012 Annual Research Report
  • [Presentation] Hydration effects on DNA in water: theoretical ab initio study via elongation-PCM method2012

    • Author(s)
      Y. Orimoto and Y. Aoki
    • Organizer
      28th Symposium on Chemical Kinetics and Dynamics
    • Place of Presentation
      福岡
    • Related Report
      2012 Annual Research Report
  • [Presentation] Elongation geometry optimization method for bio-molecule within polarizable continuum model2012

    • Author(s)
      K. Liu and Y. Aoki
    • Organizer
      28th Symposium on Chemical Kinetics and Dynamics
    • Place of Presentation
      福岡
    • Related Report
      2012 Annual Research Report
  • [Presentation] Theoretical study of solvent effects on spin-polarized molecular wire under electric field by open-shell Elongation method with the polarizable continuum model2012

    • Author(s)
      X. Zhu, Y. Orimoto, F. L. Gu, and Y. Aoki
    • Organizer
      28th Symposium on Chemical Kinetics and Dynamic
    • Place of Presentation
      福岡
    • Related Report
      2012 Annual Research Report
  • [Presentation] Theoretical study of one-dimensional metalloporphyrin array using elongation method2012

    • Author(s)
      S. Abe, K. Liu, Y. Orimoto, and Y. Aoki
    • Organizer
      第6回分子科学討論会
    • Place of Presentation
      東京
    • Related Report
      2012 Annual Research Report
  • [Presentation] High-efficient DNA electronic structure analysis by ab initio elongation method2012

    • Author(s)
      Y. Orimoto, P. Xie, K. Liu, F. L. Gu, and Y. Aoki
    • Organizer
      第6回分子科学討論会
    • Place of Presentation
      東京
    • Related Report
      2012 Annual Research Report
  • [Presentation] Development of elongation optimization method and local vibrational analysis2012

    • Author(s)
      Y. Aoki, K. Liu, Y. Yan, Y. Orimoto, and F. L. Gu
    • Organizer
      第6回分子科学討論会
    • Place of Presentation
      東京
    • Related Report
      2012 Annual Research Report
  • [Presentation] A theoretical study on electronic structures of heteronanotubes by elongation method2012

    • Author(s)
      R. Tsutsui, K. Liu, Y. Orimoto, F. L. Gu, and Y. Aoki
    • Organizer
      第6回分子科学討論会
    • Place of Presentation
      東京
    • Related Report
      2012 Annual Research Report
  • [Presentation] Elongation dynamics and local transition state search on reaction site2012

    • Author(s)
      P. Xie, Y. Orimoto, K. Liu, Y. Yan, F. L. Gu, and Y. Aoki
    • Organizer
      第6回分子科学討論会
    • Place of Presentation
      東京
    • Related Report
      2012 Annual Research Report
  • [Presentation] Efficient serach for optimized geometry of whole system by elongation local optimization method2012

    • Author(s)
      K. Liu, Y. Orimoto, F. L. Gu, and Y. Aoki
    • Organizer
      第6回分子科学討論会
    • Place of Presentation
      東京
    • Related Report
      2012 Annual Research Report
  • [Presentation] Highly accurate and efficient quantum chemical method for nano-bio functional designs2012

    • Author(s)
      Y. Aoki
    • Organizer
      The 2nd International Symposium on Large-scale Computional Science and Engineering
    • Place of Presentation
      東京
    • Related Report
      2012 Annual Research Report
  • [Presentation] Highly accurate functional design of DNA/Nanotubes/Nanowires by efficient quantum chemical approach2011

    • Author(s)
      Y.Aoki
    • Organizer
      第六届国際理論化学、分子模擬和生命科学研討会
    • Place of Presentation
      広州(China)
    • Year and Date
      2011-11-13
    • Related Report
      2011 Annual Research Report
  • [Presentation] Highly accurate functional design of DNA/Nanotubes/Nanowires by efficient quantum chemical approach2011

    • Author(s)
      Y.Aoki
    • Organizer
      ICCMSE 2011
    • Place of Presentation
      Halkidiki (Greece)
    • Year and Date
      2011-10-03
    • Related Report
      2011 Annual Research Report
  • [Presentation] Theoretical analysis of polythiophene derivatives as high per formance photovoltaic cell2011

    • Author(s)
      L.Jiang, S.Feng, Y.Aoki
    • Organizer
      The 3rd Aisan Symposium on Advanced Materials
    • Place of Presentation
      福岡
    • Year and Date
      2011-09-21
    • Related Report
      2011 Annual Research Report
  • [Presentation] Development of Elongation Geometry Optimization Method2011

    • Author(s)
      L.kai, F.L.Gu, Y.Aoki
    • Organizer
      The 3rd Aisan Symposium on Advanced Materials
    • Place of Presentation
      福岡
    • Year and Date
      2011-09-21
    • Related Report
      2011 Annual Research Report
  • [Presentation] Molecular design for donor-nanowire-acceptor photoelectric conversion materials by using elongation method2011

    • Author(s)
      H.Yang, O.Lododa, F.L.Gu, Y.Aoki
    • Organizer
      The 3rd Aisan Symposium on Advanced Materials
    • Place of Presentation
      福岡
    • Year and Date
      2011-09-21
    • Related Report
      2011 Annual Research Report
  • [Presentation] Conductivity Analysis of DNA2011

    • Author(s)
      X.Peng, F.L.Gu, Y.Aoki
    • Organizer
      The 3rd Aisan Symposium on Advanced Materials
    • Place of Presentation
      福岡
    • Year and Date
      2011-09-21
    • Related Report
      2011 Annual Research Report
  • [Presentation] Organic Ferromagnetic Materials Design with High-spin Stability Index by Quantum Chemical Approach2011

    • Author(s)
      X.Zhu, F.L.Gu, Y.Aoki
    • Organizer
      The 3rd Aisan Symposium on Advanced Materials
    • Place of Presentation
      福岡
    • Year and Date
      2011-09-21
    • Related Report
      2011 Annual Research Report
  • [Presentation] NLO analysis of ladder-structure polydiacetylenes derivatives2011

    • Author(s)
      L.Z.Kang, F.L.Gu, Y.Aoki
    • Organizer
      The 3rd Aisan Symposium on Advanced Materials
    • Place of Presentation
      福岡
    • Year and Date
      2011-09-20
    • Related Report
      2011 Annual Research Report
  • [Presentation] Highly accurate linear scaling method-elongation method- and its applications to large systems2011

    • Author(s)
      Y.Aoki, K.Liu, F.L.Gu
    • Organizer
      ISTCP-VII
    • Place of Presentation
      東京
    • Year and Date
      2011-09-06
    • Related Report
      2011 Annual Research Report
  • [Presentation] Electric structures and molecular structures of polyynes2011

    • Author(s)
      A.Imamura, Y.Aoki
    • Organizer
      ISTCP-VII
    • Place of Presentation
      東京
    • Year and Date
      2011-09-03
    • Related Report
      2011 Annual Research Report
  • [Presentation] Development of Highly Accurate Elongation Method to Large Systems and its Application to Functional Designs2011

    • Author(s)
      Y.Aoki
    • Organizer
      4th JCS Symposium on Theoretical Chemistry
    • Place of Presentation
      Conference Center of AS CR-Chateau Liblice (Czech Republic)(招待講演)
    • Year and Date
      2011-05-18
    • Related Report
      2011 Annual Research Report
  • [Book] Calculations on Nonlinear Optical Properties for Large Systems:The Elongation Method2015

    • Author(s)
      Feng Long Gu, Yuriko Aoki, Michael Springborg, and Bernard Kirtman
    • Total Pages
      93
    • Publisher
      SPRINGER BRIEFS IN MOLECULAR SCIENCE, ELECTRICAL AND MAGNETIC PROPERTIES OF ATOMS, MOLECULES, AND CLUSTERS, Springer International Publishing
    • Related Report
      2014 Annual Research Report
  • [Book] 「高分子ナノテクノロジーハンドブック~最新ポリマーABC技術を中心として~」第5編第2章2014

    • Author(s)
      青木百合子, 今村詮
    • Publisher
      株式会社エヌ・ティー・エス
    • Related Report
      2013 Annual Research Report
  • [Book] Elongation法による巨大系の効率的電子状態・構造シミュレーション2013

    • Author(s)
      青木 百合子
    • Publisher
      日本シミュレーション学会
    • Related Report
      2013 Annual Research Report
  • [Book] Elongation Method for Delocalized Nano-wires2012

    • Author(s)
      Y. Aoki and F. L. Gu
    • Publisher
      Progress in Chemistry, Chinese Academy of Science
    • Related Report
      2012 Annual Research Report
  • [Book] Elongation Method for Delocalized Nano-wires2012

    • Author(s)
      Yuriko Aoki, Feng Long Gu
    • Publisher
      Progress in Chemistry(In press)
    • Related Report
      2011 Annual Research Report

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Published: 2011-04-06   Modified: 2019-07-29  

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