Biodiversity and phylobiogeography of gibbons

2011 Fiscal Year Final Research Report

• Project/Area Number: 20405016
• Research Category: Grant-in-Aid for Scientific Research (B)
• Allocation Type: Single-year Grants
• Section: 海外学術
• Research Field: Physical anthropology
• Research Institution: Kyoto University
• Principal Investigator: HIRAI Hirohisa 京都大学, 霊長類研究所, 教授 (10128308)
• Co-Investigator(Kenkyū-buntansha): KODA Hiroki 京都大学, 霊長類研究所, 助教 (70418763) ; MIYABE Takako 京都大学, 霊長類研究所, 助教 (10437288) ; ENDO Hideki 東京大学, 総合研究博物館, 教授 (30249908)
• Project Period (FY): 2008 – 2011
• Keywords: 東南アジア / テナガザル / 染色体 / ゲノム / ヘテロクロマチン / 音声 / 形態

Research Abstract

We studied 4 countries of Indonesia, Thailand, Malaysia, and Bangladesh, and analyzed 8 species including western hoolock gibbons. We found for the first time a pericentoric inversion in chromosome 8. Whole genome sequences of mitochondrial DNA of all four genera were investigated, and enabled us to depict a new phylogenic tree. Analyses of transposable DNA elements gave a new insight for investigating characteristics of heterochromatin. New analytical techniques for vocalization and morphology were tried and proposed new viewpoints.

Research Products

• [Journal Article] Evaluation of the predictive performance of a pharmacokinetic model for propofol in Japanese macaques (2012)
  • Author(s): Miyabe-Nishiwaki T, K Masui, A Kaneko, K Nishiwaki, T Nishio, H. Kanazawa
  • Journal Title: Journal of Veterinary Pharmacology and Therapeutics
  • Peer Reviewed
• [Journal Article] Streptococcustroglodytae sp. nov., from the Chimpanzee Oral Cavity (2012)
  • Author(s): Okamoto M, Imai S, Miyanohara M, SaitoW, Momoi Y, Abo T, Nomura Y, Ikawa T, Ogawa T, Miyabe-Nishiwaki T, Kaneko A, Watanabe A, Watanabe S, Hayashi M, Tomonaga M, Hanada N
  • Journal Title: Int J SystEvol Microbiol
  • Peer Reviewed
• [Journal Article] Evolution and biological meaning of genomic wastelands(RCRO): proposal of hypothesis (2012)
  • Author(s): Hirai H
  • Journal Title: In Post-Genome Biology of Primates Pages: 227-240
  • Peer Reviewed
• [Journal Article] Repetitive sequences originating from the centromere constitute large-scale heterochromatin in the telomereregion in the siamang (2012)
  • Author(s): Koga A, Hirai Y, Hara T, Hirai H
  • Journal Title: A small ape, Heretity Volume: 108巻
• [Journal Article] Collection, Analysis, and Distribution of Three-Dimensional CT Data from Primate and Other Skull Specimens Jpn (2011)
  • Author(s): Endo H, Yamamoto Y, Yamamoto H, SakaiT, Itou T, Koie H, Hirai H
  • Journal Title: J. Zoo Wildl. Med Volume: 16巻 Pages: 45-53
• [Journal Article] Necropsy case report for an old wild Japanese macaque (2011)
  • Author(s): Hayakawa S, Hernadez A. D, Suzuki M, Sugaya K, koda H, Hasegawa H, Endo H
  • Journal Title: Primate Res Volume: 27巻 Pages: 3-10
  • DOI: DOI:10.2354/psj.27.001
• [Journal Article] Differential prefrontal white matterdevelopment in chimpanzees and humans (2011)
  • Author(s): Sakai T, Mikami A, Tomonaga M, Matsui M, Suzuki J, Hamada Y, Tanaka M, Miyabe-Nishiwaki T, Makishima H, Nakatsukasa M, Matsuzawa T
  • Journal Title: Curr Biol Volume: 21巻 Pages: 1397-1402
  • Peer Reviewed
• [Journal Article] Diversification of bitter tastereceptor gene family in western chimpanzees (2011)
  • Author(s): Sugawara T, Go Y, Udono T, Morimura N, Tomonaga M, Hirai H, Imai H
  • Journal Title: Molecular Biology and Evolution Volume: 28巻 Pages: 921-93
• [Journal Article] Positive selection ofToll-like receptor 2 polymorphisms intwo closely related old world monkeyspecies, rhesus and Japanese macaques (2011)
  • Author(s): Takaki A, Yamazaki A, Maekawa T, Shibata H, Hirayama K, Kimura A, HiraiH, Yasunami M
  • Journal Title: Immunogenetics
  • DOI: DOI:10.1007/S00251-011-0556-2
  • Peer Reviewed
• [Journal Article] Genomes andgeography : genomic insights into theevolution and phylogeography of thegenus Schistosoma (2011)
  • Author(s): Lawton SP, Hirai H, Ironside JE, Johnstone DA, Rollinson D
  • Journal Title: Parasites & Vectors Volume: 4巻 Pages: 131
  • DOI: DOI:10.1186/1756-3305-4-131
  • Peer Reviewed
• [Journal Article] B chromosomes have a functional effecton femal sex determination in lakeVictoria cichlid fishes (2011)
  • Author(s): Yoshida K, Terai Y, Mizoiri S, AibaraM, Nishihara H, Watanabe M, Kuroiwa A, Hirai H, Hirai Y, Matsuda Y, Okada N
  • Journal Title: PLoS Genetics Volume: 7巻
  • Peer Reviewed
• [Journal Article] Activation of the long terminal repeatof human endogenous retrovirus K bymelanoma-specific transcriptionfactor MITF-M (2011)
  • Author(s): Katoh I, Mirova A, Kurata S, MurakamiY, Horikawa K, Nakakuki N, Sakai T, Hashimoto K, Maruyama A, Yonaga T, Fukunishi N, Moriishi K, and Hirai H
  • Journal Title: Neoplasia Volume: 13巻 Pages: 1081-1092
• [Journal Article] Craniodentalmechanics and diet in Asian colobines : Morphological evidence of mature seedpredation and sclerocarpy (2010)
  • Author(s): Koyabu, D. B. and Endo, H
  • Journal Title: American Journal of Physical Anthropology Volume: 142巻 Pages: 137-148
• [Journal Article] Evolutionof subterminal satellite(StSat) repeats in hominids (2010)
  • Author(s): Koga A, Notohara M, Hirai H
  • Journal Title: Genetica Volume: 139巻 Pages: 167-175
  • Peer Reviewed
• [Journal Article] Three-dimensional reconstruction ofthe xenarthrous process of thethoracic and lumber vertebrae in thegiant anteater (2009)
  • Author(s): Endo, H., Komiya, T., Kawada, S., Hayashida, A., Kimura, J., Itou, T., Koie, H. and Sakai, T.
  • Journal Title: Mammal Study Volume: 34巻 Pages: 1-6
• [Journal Article] Dimensionsof forelimb muscles in orangutans andchimpanzees (2009)
  • Author(s): Oishi, M., Ogihara, N., Endo, H., Ichihara, M. and Asari M.
  • Journal Title: J Anat Volume: 215巻 Pages: 373-382
• [Journal Article] Craniofacial variation and dietaryadaptations in African colobines (2009)
  • Author(s): Koyabu, D. B. and Endo, H.
  • Journal Title: J. Hum. Evol. Volume: 56巻 Pages: 525-536
• [Journal Article] Muscle architecture of theupper limb in the orangutan (2008)
  • Author(s): Oishi, M., Ogihara, N., Endo, H. and Asari, M.
  • Journal Title: Primates Volume: 49巻 Pages: 204-209
• [Presentation] ミトコンドリアゲノムによるテナガザルの分子系統進化 (2011)
  • Author(s): 松井淳, Israt Jahan, Md. Anwarul Islam, Zahed Mohammad Malekur Rahman, 平井啓久
  • Organizer: 第27回日本霊長類学会大会
  • Place of Presentation: 犬山市
  • Year and Date: 20110700
• [Presentation] チンパンジーにあってヒトにない染色体端部ゲノム不毛地帯:(1)存在様式変異から推測される非相同染色体間末端組換え (2011)
  • Author(s): 平井啓久, 平井百合子, 古賀章彦, 鵜殿俊史
  • Organizer: 第27回日本霊長類学会大会
  • Place of Presentation: 犬山市
  • Year and Date: 2011-07-18
• [Presentation] チンパンジーにあってヒトにない染色体端部ゲノム不毛地帯:(2)培養細胞を用いた組換えの検出 (2011)
  • Author(s): 古賀章彦, 平井百合子, 平井啓久
  • Organizer: 第27回日本霊長類学会大会
  • Place of Presentation: 犬山市
  • Year and Date: 2011-07-18
• [Presentation] 染色体次端部反復配列はアフリカ類人猿の共通祖先にあってヒトでは消滅したことの統計的検証 (2010)
  • Author(s): 古賀章彦, 平井啓久
  • Organizer: 日本遺伝学会第82回大会
  • Place of Presentation: 札幌市
  • Year and Date: 2010-09-22
• [Presentation] Miyabe-Nishiwaki T et al, Intergeneric and interspecifichybrids in gibbons : chromosomalaspects of the small ape evolution (2010)
  • Author(s): Baicharoen S
  • Organizer: International Primatological Society XXIII
  • Place of Presentation: Kyoto
  • Year and Date: 2010-09-15
• [Presentation] Origin and evolution of retro transposable compound repeat DNA organization(RCRO) (2010)
  • Author(s): Koga A, Hirai H
  • Organizer: International Primatological Society XXIII Congress
  • Place of Presentation: Kyoto
  • Year and Date: 2010-09-14
• [Presentation] 霊長類進化の科学:遺伝子以外のゲノムがもたらす生物の進化(特別講演) (2010)
  • Author(s): 平井啓久
  • Organizer: 日本薬学会第130年会
  • Place of Presentation: 岡山コンベンションセンター
  • Year and Date: 2010-03-29
• [Presentation] Introduction of the KUPRI project tostudy the diversity of gibbons (2009)
  • Author(s): Chisako Oyakawa, Hiroki Koda
  • Organizer: FieldResearch of Primates in South-easternAsian Tropical Forest
  • Place of Presentation: 犬山市
  • Year and Date: 2009-02-07
• [Presentation] Geographic variation of species-specific call in wild agile gibbons (2008)
  • Author(s): Chisako Oyakawa, Hiroki Koda, Toshiaki Tanaka, Tadahiro Murai, Santi Nulukamilah, Rizaldi, Amisir Bakar, Nobuo Masataka
  • Organizer: The 2nd International Symposium of the Biodiversity and Evolution Global COE project "from Genome to Ecosystem"
  • Place of Presentation: 京都市
  • Year and Date: 2008-11-21
• [Presentation] マイクロサテライト解析からみたスマトラ産フクロテナガザルSymphalangussyndactylusの遺伝的組成 (2008)
  • Author(s): 早野あずさ, D Perwitasari-F., H Wjayanto, 宮部貴子, A Mootnick, D Iskandariati, J Pamungkas, 平井啓久
  • Organizer: 2008年度日本哺乳類学会大会
  • Place of Presentation: 山口市
  • Year and Date: 2008-09-15
• [Presentation] ベトナムの亜熱帯林における樹上性小型哺乳動物を対象とした巣箱調査 (2008)
  • Author(s): 加藤アミ, 押田龍夫, Son Nguyen Truong, Nghia Nguyen Xuan, Hao Van Luong, 遠藤秀紀
  • Organizer: 日本哺乳類学会2008年度大会山口大会
  • Year and Date: 2008-09-13
• [Presentation] コロブス亜科霊長類の顔面頭蓋における形態的多様性と食性適応 (2008)
  • Author(s): 小藪大輔, 遠藤秀紀
  • Organizer: 日本哺乳類学会2008年度大会山口大会
  • Year and Date: 2008-09-13
• [Presentation] 霊長類足骨格のCT画像解析 (2008)
  • Author(s): 佐々木基樹, 遠藤秀紀, 大石元治, 山田一孝, 北村延夫
  • Organizer: 日本哺乳類学会2008年度大会山口大会
  • Year and Date: 2008-09-13
• [Presentation] かたちの学校13動物園遺体を用いた形態学研究の近未来 (2008)
  • Author(s): 遠藤秀紀
  • Organizer: 日本哺乳類学会2008年度大会山口大会
  • Year and Date: 2008-09-12
• [Presentation] インドサイ唾液腺(耳下腺、顎下腺)の組織学的観察 (2008)
  • Author(s): 城ヶ原貴通, 盛口敬一, 遠藤秀紀, 小藪大輔, 林田明子, 織田銑一
  • Organizer: 第14回日本野生動物医学会大会神戸大会
  • Year and Date: 2008-09-06
• [Presentation] 食肉目の前肢における骨格筋の比較解剖学的研究-予備的研究- (2008)
  • Author(s): 大石元治, 遠藤秀紀, 林田明子, 宇根有美, 樽創, 浜夏樹, 浅利昌男
  • Organizer: 第14回日本野生動物医学会大会神戸大会
  • Year and Date: 2008-09-06
• [Presentation] 社会教育機関での研究の可能性 (2008)
  • Author(s): 遠藤秀紀
  • Organizer: 第14回日本野生動物医学会大会神戸大会
  • Year and Date: 2008-09-05
• [Presentation] コロブス亜科霊長類の顔面頭蓋における形態的多様性と食性適応:三次元形態測定学的解析 (2008)
  • Author(s): 小藪大輔, 遠藤秀紀
  • Organizer: 第10回日本進化学会
  • Year and Date: 2008-08-22
• [Presentation] The future of dead body science and veterinary anatomy in Asia (2008)
  • Author(s): Endo, H.
  • Organizer: The 3rd International Meeting on Asian Zoo/Wildlife Medicine and Conservation
  • Place of Presentation: Bogor
  • Year and Date: 2008-08-19
• [Presentation] Functional Morphology of the Manipulating Mechanism of the Giant Panda (2008)
  • Author(s): Endo, H.
  • Organizer: The 3rd International Meeting on Asian Zoo/Wildlife Medicine and Conservation
  • Place of Presentation: Bogor
  • Year and Date: 2008-08-19
• [Presentation] 野生アジルテナガザルの歌における地域差の検討 (2008)
  • Author(s): 親川千紗子, 香田啓貴, 田中俊明, SNKamilah, A Bakar, 村井勅裕, 正高信男
  • Organizer: 第24回日本霊長類学会
  • Place of Presentation: 東京都
  • Year and Date: 2008-07-05
• [Book] The gibbons(分担執筆)「Genetic differentiation of agile gibbons between Sumatra and Kalimantan in Indonesia」 (2009)
  • Author(s): Hirai Hirohisa
  • Publisher: Springer
• [Book] 骨の博物誌,東京大学総合研究博物館特別展「命の認識」図録 (2009)
  • Author(s): 遠藤秀紀(監修)
• [Book] 「歌」を歌うサルーテナガザルの多様な音声生き物たちのつづれ織り第1巻 (2009)
  • Author(s): 香田啓貴
  • Total Pages: 106-114
  • Publisher: 中村印刷株式会社
• [Book] Anatomical Imaging (2008)
  • Author(s): Frey, R. and H. Endo., (Eds.)
  • Total Pages: 156
  • Publisher: Springer
• [Book] Checklist of Wild Mammal Species of Vietnam (2008)
  • Author(s): Cang, D. N., Endo, H., Son, N. T., Oshida, T., Canh, L. X., Phuong, D. H., Lunde, D., Kawada, S., Hayashida, A. and Sasaki, M.(Eds.).
  • Total Pages: 400
  • Publisher: Shoukadoh, Kyoto
• [Book] 「でくのぼうのゴミ箱」:生き物たちのつづれ織り (2008)
  • Author(s): 平井啓久
  • Publisher: 京都大学グローバルCOEプログラム
• [Book] 「「歌」を歌うサルーテナガザルの多様な音声」:生き物たちのつづれ織り (2008)
  • Author(s): 香田啓貴
  • Total Pages: 5
  • Publisher: 京都大学グローバルCOEプログラム