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2012 Fiscal Year Final Research Report

Elucidation of the mammalian mitochondrial respiration mechanism at the atomic level.

Research Project

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Project/Area Number 22247012
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Research Field Structural biochemistry
Research InstitutionUniversity of Hyogo

Principal Investigator

YOSHIKAWA Shinya  兵庫県立大学, 生命理学研究科, 教授 (40068119)

Co-Investigator(Renkei-kenkyūsha) OGURA Takashi  兵庫県立大学, 大学院・生命理学研究科, 教授 (70183770)
SHIMADA Hideo  兵庫県立大学, 大学院・生命理学研究科, 教授 (80095611)
MIYAZAWA Otsuo  兵庫県立大学, 大学院・生命理学研究科, 教授 (60247252)
MURAMOTO Kazumasa  兵庫県立大学, 大学院・生命理学研究科, 准教授 (50305679)
KAMIYA Katsumasa  筑波大学, 大学院・数理物質系, 助教 (60436243)
Project Period (FY) 2010 – 2012
Keywords生体エネルギー変換 / 膜タンパク質 / 金属タンパク質 / X線結晶構造解析 / 振動分光解析
Research Abstract

X-ray structure of bovine heart cytochrome oxidase at the hydrogen atom level showed that the proton-pumping pathway (H-pathway) can accept 4 protons, while the time-resolved infrared analysis showed that the open/closed transition of H-pathway is controlled by the O2 reduction site. The mechanism of suppression of reactive oxygen production by NADH-ubiquinone reductase has been proposed vibrational spectroscopically. The 2D crystallization conditions for FoF1ATP synthase has been essentially established. The induction of conformationl changes in the transmembrane region of CcO by cytocrome c was discovered during the 2D crystallization of the complex of the two proteins.

  • Research Products

    (17 results)

All 2013 2012 2011 2010

All Journal Article (13 results) (of which Peer Reviewed: 11 results) Presentation (4 results)

  • [Journal Article] Resonance Raman Spectral properties of FMN of bovine Heart NADH:ubiquinone Oxidoreductase Suggesting a Mechanism for the Prevention of spontaneous Production of reactive Oxygen Species2013

    • Author(s)
      M. Hikita, K. Shinzawa-Itoh, M. Moriyama, T. Ogura, K. Kihira, S. Yoshikawa
    • Journal Title

      Biochemistry

      Volume: 52 Pages: 98-104

  • [Journal Article] EPR detection of two protein-associated ubiquinone components (SQNf and SQNs) in the membrane in situ and in proteoliposomes of isolated bovine heart complex I2012

    • Author(s)
      Tomoko Ohnishi, S. Tsuyoshi Ohnishi, Kyoko Shinzawa-Itoh, Shinya Yoshikawa, Ralph T. Weber
    • Journal Title

      Biochimica et Biophysica Acta (BBA) - Bioenergetics

      Volume: 1817 Pages: 1803-1809

  • [Journal Article] Two tyrosyl radicals stabilize high oxidation states in cytochrome c oxidase for efficient energy conservation and proton translocation2012

    • Author(s)
      Michelle A. Yu, Tsuyoshi Egawa, Kyoko Shinzawa-Itoh, Shinya Yoshikawa, Victor Guallar, Syun-Ru Yeh, Denis L. Rousseau, Gary J. Gerfen
    • Journal Title

      Journal of the American Chemical Society

      Volume: 134 Pages: 4753-4761

    • Peer Reviewed
  • [Journal Article] An intermediate conformational state during ligand binding to cytochrome c oxidase detected by time-resolved resonance Raman analyses of heme peripheral groups. Izumi Ishigami2012

    • Author(s)
      Takeshi Nishigaki, Kyoko Shinzawa-Itoh, Shinya Yoshikawa Takashi Ogura
    • Journal Title

      Chemistry Letters

      Volume: 41 Pages: 178-180

    • Peer Reviewed
  • [Journal Article] Reaction mechanism of Mammalian mitochondrial cytochrome C oxidase2012

    • Author(s)
      Shinya Yoshikawa, Kazumasa Muramoto, Kyoko Shinzawa-Itoh
    • Journal Title

      Advances in experimental medicine and biology

      Volume: 748 Pages: 215-236

    • Peer Reviewed
  • [Journal Article] Distinguishing between Cl^- and O_2^2- as the bridging element between Fe^3+ and Cu^2+ in resting-oxidized cytochrome c oxidase. Michihiro Suga2011

    • Author(s)
      Michihiro Suga,Naomine Yano, Kazumasa Muramoto, Kyoko Shinzawa-Itoh, Tomoko Maeda, Eiki Yamashita, Tomitake Tsukihara, Shinya Yoshikawa
    • Journal Title

      Acta crystallographica. Section D

      Volume: 67 Pages: 742-744

    • Peer Reviewed
  • [Journal Article] NMR basis for interprotein electron transfer gating between cytochrome c and cytochrome c oxidase2011

    • Author(s)
      Koichi Sakamoto, Masakatsu Kamiya, Mizue Imai, Kyoko Shinzawa-Itoh,Takeshi Uchida, Keiichi Kawano, Shinya Yoshikawa, Koichiro Ishimori
    • Journal Title

      Proceedings of the National Academy of Sciences of the United States of America

      Volume: 108 Pages: 12271-12276

    • Peer Reviewed
  • [Journal Article] The O_2 reduction and proton pumping gate mechanism of bovine heart cytochrome c oxidase2011

    • Author(s)
      Shinya Yoshikawa, Kazumasa Muramoto, Kyoko Shinzawa-Itoh
    • Journal Title

      Biochimica et biophysica acta

      Volume: 1807 Pages: 1279-1286

    • Peer Reviewed
  • [Journal Article] Proton-pumping mechanism of cytochrome c oxidase2011

    • Author(s)
      Shinya Yoshikawa, Kazumasa Muramoto, Kyoko Shinzawa-Itoh
    • Journal Title

      Annual Review of Biophysics

      Volume: 40 Pages: 205-223

    • Peer Reviewed
  • [Journal Article] Bovine cytochrome c oxidase structures enable O_2 reduction with minimization of reactive oxygens and provide a proton-pumping gate2010

    • Author(s)
      Kazumasa Muramoto, Kazuhiro Ohta, Kyoko Shinzawa-Itoh, Katsumasa Kanda, Maki Taniguchi, Hiroyuki Nabekura, Eiki Yamashita, Tomitake Tsukihara, ShinyaYoshikawa
    • Journal Title

      Proceedings of the National Academy of Sciences of the United States of America

      Volume: 107 Pages: 7740-7745

    • Peer Reviewed
  • [Journal Article] Cell-free synthesis of cytochrome c oxidase, a multicomponent membrane protein2010

    • Author(s)
      Yukie Katayama, Kunitoshi Shimokata, Makoto Suematsu, Takashi Ogura, Tomitake Tsukihara, Shinya Yoshikawa
    • Journal Title

      Hideo Shimada Journal of Bioenergetics and Biomembranes

      Volume: 42 Pages: 235-240

    • Peer Reviewed
  • [Journal Article] A resonance Raman band assignable to the O-O stretching mode in the resting oxidized state of bovine heart cytochrome c oxidase2010

    • Author(s)
      Miyuki Sakaguchi, Kyoko Shinzawa-Itoh, Shinya Yoshikawa
    • Journal Title

      Takashi Ogura Journal of bioenergetics and biomembranes

      Volume: 42 Pages: 241-243

    • Peer Reviewed
  • [Journal Article] X-ray structure of the NO-bound CuB in bovine cytochrome c oxidase2010

    • Author(s)
      Kazuhiro Ohta, Kazumasa Muramoto, Kyoko Shinzawa-Itoh, Eiki Yamashita, Shinya Yoshikawa
    • Journal Title

      Tomitake Tsukihara Acta Crystallographica section F

      Volume: F66 Pages: 251-253

    • Peer Reviewed
  • [Presentation] Reaction mmechanism of bovine heart cytochrome c oxidase2012

    • Author(s)
      Shinya Yoshikawa
    • Organizer
      Invited Lecture, SBMPs (Structural Biology of Membrane Proteins) 4th Annual Meeting
    • Place of Presentation
      Maratea, Italy
    • Year and Date
      20120530-0602
  • [Presentation] The O_2 Reduction and Proton Pumping Mechanism Gate Mechanism of Bovine Heart Cytochrome c oxidase2012

    • Author(s)
      Shinya Yoshikawa
    • Organizer
      Invited Lecture Workshop on Allosteric cooperativity in soluble, membrane bound hemoproteins and related membrane system
    • Place of Presentation
      Bari Italy
    • Year and Date
      20120529-0601
  • [Presentation] Nanosecond time-resolved infrared basis for a bulge of the transmembrane helix between hemes a and a3 to facilitate highly efficient proton pumping by bovine heart cytochrome c oxidase2012

    • Author(s)
      Shinya Yoshikawa, Minoru Kubo, Satoru Nakashima, Satoru Yamaguchi, Takashi Ogura, Masao Mochizuki JiYoung Kang, Masaru Tateno, Kazumasa Muramoto
    • Organizer
      Kyoko Shinzawa-Itoh Invited Lecture, European Bioenergetics Conference 2012, September 15th-20th Freiburg
    • Place of Presentation
      Germany
    • Year and Date
      20120000
  • [Presentation] Structural studies on bovine heart cytochrome c oxidase2012

    • Author(s)
      Shinya Yoshikawa, Kazumasa Muramoto, Kyoko Shinzawa-Itoh
    • Organizer
      Masao Mochizuki Biochimica et biophysica acta
    • Year and Date
      20120000

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Published: 2014-08-29  

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